• System suitability example using data from the SProCoP tutorial
• System suitability example using data published in An Automated Pipeline to Monitor System Performance in Liquid Chromatography Tandem Mass Spectrometry Proteomic Experiments.
• System suitability example using data published in MSstatsQC: Longitudinal system suitability monitoring and quality control for targeted proteomic experiments.
• Lindsay Pino's real world system suitability data
• System suitability example using isotopologue tracking via a Pierce™ LC-MS/MS System Suitability Standard (7 x 5 Mix)
• Custom metric example: add a metric for peptide identification counts

• Chromatogram library example from completing the chromatogram library tutorial.
• Example reproducibility report

• Specialized reporting for Multi Attribute Method (MAM) analysis

• Lipidomics library, including iRT and ion mobility filtering (Kirkwood, K; Baker, E. et al.)
• Glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes (Ashwood, C; Gundry, R; et al.)
• Analysis of cross-linked peptide pairs - (Chavez, J.D. et al.) (also view in Panorama Public)

• Yeast SILAC data from MRMer experiment (Martin, D. B., et al.)
• Data from inter-laboratory studies of the CPTAC Verification Working Group (Addona, T.A. et al.)
• Study 7 - Data from site 56
• Study 7 - Data from site 52
• Study 9 - Data from site 56A - includes calibration curves
• Assays for human transcription factors (Stergachis, A.B. et al.)

Developers with experience creating SQL queries, R, Perl, Python or other scripts may be interested in exploring the Query Schema Browser to see the underlying data structures exposed for SQL queries, especially the queries in the targetedms schema, or LabKey Server client API requests.