Supplementary Data 2.zip

Example Data
Protein / LabelDescriptionProtein Note/Annotations 
TAF11 HsCD00301672 (1-A03)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MDDAHESPSDKQuality Score: 401230.4823 MDDAHESPSDKlight2+616.24841230.4823721.3925 
EAAAEEGELESQDVSDLTTVERQuality Score: 402377.0769 EAAAEEGELESQDVSDLTTVERlight2+1189.54572377.07691138.5914 
EDSSLLNPAAKQuality Score: 101143.5771 EDSSLLNPAAKlight2+572.79581143.5771720.0889 
VDEDEIQKQuality Score: 20974.4556 VDEDEIQKlight2+488.2351974.4556417.5521 
MQILVSSFSEEQLNRQuality Score: 101779.8826 MQILVSSFSEEQLNRlight2+890.94851779.88261029.6335 
LIQSITGTSVSQNVVIAMSGISKQuality Score: 102332.2671 LIQSITGTSVSQNVVIAMSGISKlight2+1167.14092332.26711237.9192 
VFVGEVVEEALDVCEKQuality Score: 101820.8866 VFVGEVVEEALDVCEKlight2+911.45061820.88661130.2485 
WGEMPPLQPKQuality Score: 101181.5903 WGEMPPLQPKlight2+591.80241181.5903620.6591 
GQIPNSKQuality Score: 40742.3973 GQIPNSKlight2+372.2060742.3973314.0712 
POLR2F HsCD00301192 (1-A06)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
ITTPYMTKQuality Score: 10953.4892 ITTPYMTKlight2+477.7519953.4892417.2376 
MAX HsCD00301600 (1-A07)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MSDNDDIEVESDADKQuality Score: 401681.6625 MSDNDDIEVESDADKlight2+841.83851681.66251128.1602 
AHHNALERQuality Score: 40946.4733 AHHNALERlight2+474.2439946.4733417.1323 
DSFHSLRQuality Score: 20860.4141 DSFHSLRlight2+431.2143860.4141315.8414 
DSVPSLQGEKQuality Score: 101058.5244 DSVPSLQGEKlight2+530.26951058.5244618.8131 
ATEYIQYMRQuality Score: 101173.5488 ATEYIQYMRlight2+587.78171173.5488520.5385 
NHTHQQDIDDLKQuality Score: 401462.6801 NHTHQQDIDDLKlight2+732.34731462.6801824.8754 
QNALLEQQVRQuality Score: 401197.6466 QNALLEQQVRlight2+599.83061197.6466620.8999 
SSAQLQTNYPSSDNSLYTNAKQuality Score: 402288.0557 SSAQLQTNYPSSDNSLYTNAKlight2+1145.03522288.05571137.2561 
ID2 HsCD00301602 (1-A08)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
NSLSDHSLGISRQuality Score: 101284.6422 NSLSDHSLGISRlight2+643.32841284.6422822.2049 
TPVDDPMSLLYNMNDCYSKQuality Score: 102261.9644 TPVDDPMSLLYNMNDCYSKlight2+1131.98942261.9644936.8647 
ELVPSIPQNKQuality Score: 101123.6238 ELVPSIPQNKlight2+562.81921123.6238619.7896 
MAD HsCD00301407 (1-B05)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MNIQMLLEAADYLERQuality Score: 101808.8801 MNIQMLLEAADYLERlight2+905.44731808.88011030.0684 
EAEHGYASMLPYNNKQuality Score: 101722.7672 EAEHGYASMLPYNNKlight2+862.39091722.76721028.7767 
STHNEMEKQuality Score: 40974.4127 STHNEMEKlight2+488.2137974.4127417.5514 
GLVPLGPESSRQuality Score: 101110.6033 GLVPLGPESSRlight2+556.30901110.6033719.5943 
HTTLSLLTKQuality Score: 101012.5917 HTTLSLLTKlight2+507.30311012.5917518.1241 
AVHQIDQLQRQuality Score: 101206.6470 AVHQIDQLQRlight2+604.33071206.6470621.0349 
MDSIGSTVSSERQuality Score: 101267.5714 MDSIGSTVSSERlight2+634.79301267.5714821.9488 
GSMQSLGSDEGYSSTSIKQuality Score: 101832.8098 GSMQSLGSDEGYSSTSIKlight2+917.41221832.80981230.4274 
HOXA5 HsCD00304202 (1-B06)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MSSYFVNSFCGRQuality Score: 401453.6118 MSSYFVNSFCGRlight2+727.81321453.6118824.7394 
YPNGPDYQLHNYGDHSSVSEQFRQuality Score: 402709.1843 YPNGPDYQLHNYGDHSSVSEQFRlight2+1355.59952709.18431043.5730 
DSASMHSGRQuality Score: 40946.3927 DSASMHSGRlight2+474.2036946.3927517.1311 
YGYGYNGMDLSVGRQuality Score: 101550.6824 YGYGYNGMDLSVGRlight2+776.34841550.68241026.1955 
SGSGHFGSGERQuality Score: 401076.4635 SGSGHFGSGERlight2+539.23901076.4635719.0822 
SYAASASAAPAEPRQuality Score: 101347.6418 SYAASASAAPAEPRlight2+674.82821347.64181023.1498 
NSLSNSSGASADAGSTHISSRQuality Score: 102004.9097 NSLSNSSGASADAGSTHISSRlight2+1003.46212004.90971433.0089 
LHISHDNIGGPEGKQuality Score: 101472.7372 LHISHDNIGGPEGKlight2+737.37591472.73721025.0263 
YQTLELEKQuality Score: 101022.5284 YQTLELEKlight2+512.27151022.5284418.2731 
EFHFNHYLTRQuality Score: 401362.6470 EFHFNHYLTRlight2+682.33071362.6470623.3749 
IEIAHALCLSERQuality Score: 101410.7289 IEIAHALCLSERlight2+706.37181410.7289824.0962 
FOSB HsCD00301650 (1-B08)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MFQAFPGDYDSGSRQuality Score: 401576.6616 MFQAFPGDYDSGSRlight2+789.33811576.66161026.5851 
EETLTPEEEEKQuality Score: 101332.5933 EETLTPEEEEKlight2+667.30391332.5933722.9241 
HQAETDQLEEEKQuality Score: 201455.6478 HQAETDQLEEEKlight2+728.83121455.6478824.7699 
AELESEIAELQKQuality Score: 101358.6929 AELESEIAELQKlight2+680.35381358.6929823.3156 
LEFVLVAHKPGCKQuality Score: 301496.8174 LEFVLVAHKPGCKlight2+749.41601496.8174925.3875 
IPYEEGPGPGPLAEVRQuality Score: 101679.8519 IPYEEGPGPGPLAEVRlight2+840.93321679.85191228.1330 
DLPGSAPAKQuality Score: 40854.4498 DLPGSAPAKlight2+428.2322854.4498515.7520 
TSGSDQPSDPLNSPSLLARQuality Score: 101940.9440 TSGSDQPSDPLNSPSLLARlight2+971.47921940.94401232.0494 
ETS2 HsCD00301527 (1-C03)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MNDFGIKQuality Score: 40823.3898 MNDFGIKlight2+412.7022823.3898315.2861 
NMDQVAPVANSYRQuality Score: 101463.6827 NMDQVAPVANSYRlight2+732.84861463.6827924.8905 
AVMSQALKQuality Score: 10846.4633 AVMSQALKlight2+424.2390846.4633415.6322 
ATFSGFKQuality Score: 20756.3806 ATFSGFKlight2+379.1976756.3806314.2809 
FGMNGQMLCNLGKQuality Score: 101468.6625 FGMNGQMLCNLGKlight2+735.33861468.6625924.9652 
FLELAPDFVGDILWEHLEQMIKQuality Score: 402642.3455 FLELAPDFVGDILWEHLEQMIKlight2+1322.18012642.3455942.5704 
SCQSFISWTGDGWEFKQuality Score: 101933.8304 SCQSFISWTGDGWEFKlight2+967.92251933.83041031.9427 
LADPDEVARQuality Score: 10984.4876 LADPDEVARlight2+493.2511984.4876517.7025 
MYB HsCD00301531 (1-C05)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LVEQNGTDDWKQuality Score: 101303.6045 LVEQNGTDDWKlight2+652.80951303.6045722.4893 
VIANYLPNRQuality Score: 101058.5873 VIANYLPNRlight2+530.30091058.5873518.8140 
TDVQCQHRQuality Score: 401042.4614 TDVQCQHRlight2+522.23801042.4614418.5721 
VLNPELIKQuality Score: 10924.5644 VLNPELIKlight2+463.2895924.5644416.8037 
VIELVQKQuality Score: 20827.5117 VIELVQKlight2+414.7631827.5117315.3479 
WHNHLNPEVKQuality Score: 401272.6364 WHNHLNPEVKlight2+637.32541272.6364622.0248 
TSWTEEEDRQuality Score: 401151.4731 TSWTEEEDRlight2+576.74381151.4731520.2073 
IIYQAHKQuality Score: 40871.4916 IIYQAHKlight2+436.7531871.4916316.0076 
NHWNSTMRQuality Score: 401044.4559 NHWNSTMRlight2+523.23521044.4559418.6021 
VEQEGYLQESSKQuality Score: 401395.6517 VEQEGYLQESSKlight2+698.83321395.6517823.8700 
ASQPAVATSFQKQuality Score: 101233.6354 ASQPAVATSFQKlight2+617.82501233.6354821.4397 
HYNDEDPEKQuality Score: 401145.4625 HYNDEDPEKlight2+573.73851145.4625520.1172 
ELELLLMSTENELKQuality Score: 301660.8594 ELELLLMSTENELKlight2+831.43701660.85941027.8481 
CMIVHQGTILDNVKQuality Score: 101626.8221 CMIVHQGTILDNVKlight2+814.41841626.82211027.3376 
LTVTTPFHRQuality Score: 101070.5873 LTVTTPFHRlight2+536.30091070.5873518.9940 
SILESSPRQuality Score: 20887.4713 SILESSPRlight2+444.7429887.4713416.2473 
HALAAQEIKQuality Score: 20979.5451 HALAAQEIKlight2+490.7798979.5451517.6284 
MLPQTPSHLVEDLQDVIKQuality Score: 402062.0769 MLPQTPSHLVEDLQDVIKlight2+1032.04572062.07691133.8664 
QESDESGIVAEFQENGPPLLKQuality Score: 402286.1016 QESDESGIVAEFQENGPPLLKlight2+1144.05812286.10161137.2267 
QEVESPTDKQuality Score: 401031.4772 QEVESPTDKlight2+516.74581031.4772518.4074 
SLASPLQPCSSTWEPASCGKQuality Score: 102161.9773 SLASPLQPCSSTWEPASCGKlight2+1081.99582161.97731135.3649 
MEEQMTSSSQARQuality Score: 101383.5758 MEEQMTSSSQARlight2+692.79521383.5758823.6889 
YVNAFSARQuality Score: 30926.4610 YVNAFSARlight2+464.2378926.4610416.8321 
BATF HsCD00301458 (1-C06)
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
MPHSSDSSDSSFSRQuality Score: 401525.6104 MPHSSDSSDSSFSRlight2+763.81241525.61041025.8194 
QDSSDDVRQuality Score: 40920.3835 QDSSDDVRlight2+461.1991920.3835416.7410 
ADTLHLESEDLEKQuality Score: 101498.7151 ADTLHLESEDLEKlight2+750.36481498.7151925.4159 
QLTEELKQuality Score: 20859.4651 QLTEELKlight2+430.7398859.4651315.8272