Study9p1_site_56A_Merged.sky.zip

Example Data
Protein / LabelDescriptionProtein Note/Annotations 
sp|P09972|ALDOC_HUMAN Fructose-bisphosphate aldolase C OS=Homo sapiens GN=ALDOC PE=1 SV=2
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
ALQASALNAWR01199.6411 ALQASALNAWRlight2+600.82781199.6411330.486874.9174
ALQASALNAWR01199.6411 ALQASALNAWRheavy2+605.83201209.6494330.486874.9174
AEVNGLAAQGK01056.5564 AEVNGLAAQGKlight2+529.28551056.5564327.911369.7019
AEVNGLAAQGK01056.5564 AEVNGLAAQGKheavy2+533.29261064.5706327.911369.7019
ELSDIALR0915.5025 ELSDIALRlight2+458.7585915.5025325.372364.5605
ELSDIALR0915.5025 ELSDIALRheavy2+463.7627925.5108325.372364.5605
TPSALAILENANVLAR01651.9257 TPSALAILENANVLARInterference in y8 and y9light2+826.97011651.9257338.627991.4031
TPSALAILENANVLAR01651.9257 TPSALAILENANVLARheavy2+831.97431661.9340338.627991.4031
QVLFSADDR01049.5142 QVLFSADDRlight2+525.76441049.5142327.784569.4452
QVLFSADDR01049.5142 QVLFSADDRheavy2+530.76851059.5224327.784569.4452
sp|P04083|ANXA1_HUMAN Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
ALYEAGER0907.4399 ALYEAGERlight2+454.7272907.4399325.227264.2666
ALYEAGER0907.4399 ALYEAGERheavy2+459.7314917.4482325.227264.2666
GTDVNVFNTILTTR01549.8100 GTDVNVFNTILTTRlight2+775.91231549.8100336.789887.6810
GTDVNVFNTILTTR01549.8100 GTDVNVFNTILTTRheavy2+780.91641559.8183336.789887.6810
GVDEATIIDILTK01386.7606 GVDEATIIDILTKlight2+694.38761386.7606333.855081.7379
GVDEATIIDILTK01386.7606 GVDEATIIDILTKheavy2+698.39471394.7748333.855081.7379
AAYLQETGKPLDETLK01775.9305 AAYLQETGKPLDETLKlight3+592.98411775.9305329.848474.3455
AAYLQETGKPLDETLK01775.9305 AAYLQETGKPLDETLKheavy3+595.65551783.9447329.848474.3455
TPAQFDADELR01261.5939 TPAQFDADELRlight2+631.80421261.5939331.602077.1755
TPAQFDADELR01261.5939 TPAQFDADELRheavy2+636.80841271.6021331.602077.1755
sp|P09525|ANXA4_HUMAN Annexin A4 OS=Homo sapiens GN=ANXA4 PE=1 SV=4
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
VLVSLSAGGR0957.5607 VLVSLSAGGRlight2+479.7876957.5607326.129466.0935
VLVSLSAGGR0957.5607 VLVSLSAGGRheavy2+484.7918967.5690326.129466.0935
GLGTDEDAIISVLAYRNo heavy peptide?01691.8730 GLGTDEDAIISVLAYRlight3+564.96491691.8730328.324272.3029
GLGTDEDAIISVLAYRNo heavy peptide?01691.8730 GLGTDEDAIISVLAYRheavy3+568.30101701.8813328.324272.3029
DEGNYLDDALVR01378.6365 DEGNYLDDALVRlight2+690.32551378.6365333.708781.4417
DEGNYLDDALVR01378.6365 DEGNYLDDALVRheavy2+695.32961388.6447333.708781.4417
GLGTDDNTLIRLight is constant, heavy varies01173.5990 GLGTDDNTLIRlight2+587.80681173.5990330.018073.9681
GLGTDDNTLIRLight is constant, heavy varies01173.5990 GLGTDDNTLIRheavy2+592.81091183.6072330.018073.9681
GAGTDEGCLIEILASR01660.8090 GAGTDEGCLIEILASRlight2+831.41181660.8090338.787891.7269
GAGTDEGCLIEILASR01660.8090 GAGTDEGCLIEILASRheavy2+836.41591670.8173338.787891.7269
sp|P20073|ANXA7_HUMAN Annexin A7 OS=Homo sapiens GN=ANXA7 PE=1 SV=3
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LYQAGEGR0892.4403 LYQAGEGRlight2+447.2274892.4403324.957263.7199
LYQAGEGR0892.4403 LYQAGEGRheavy2+452.2316902.4485324.957263.7199
SEIDLVQIK01043.5863 SEIDLVQIKlight2+522.80041043.5863327.677869.2291
SEIDLVQIK01043.5863 SEIDLVQIKheavy2+526.80751051.6005327.677869.2291
GAGTDDSTLVR01090.5255 GAGTDDSTLVRlight2+546.27001090.5255328.522770.9401
GAGTDDSTLVR01090.5255 GAGTDDSTLVRheavy2+551.27411100.5337328.522770.9401
EFSGYVESGLK01214.5819 EFSGYVESGLKlight2+608.29821214.5819330.755775.4619
EFSGYVESGLK01214.5819 EFSGYVESGLKheavy2+612.30531222.5961330.755775.4619
GFGTDEQAIVDVVANR01689.8322 GFGTDEQAIVDVVANRlight3+564.28471689.8322328.287272.2533
GFGTDEQAIVDVVANR01689.8322 GFGTDEQAIVDVVANRheavy3+567.62081699.8405328.287272.2533
sp|Q53G71|Q53G71_HUMAN Calreticulin variant (Fragment) OS=Homo sapiens PE=2 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
QIDNPDYK0991.4611 QIDNPDYKlight2+496.7378991.4611326.739667.3292
QIDNPDYK0991.4611 QIDNPDYKheavy2+500.7449999.4753326.739667.3292
GLQTSQDARVery early eluting, 7 min, extreamely variable data,, consider dropping for this dataset0974.4781 GLQTSQDARlight2+488.2463974.4781326.433966.7102
GLQTSQDARVery early eluting, 7 min, extreamely variable data,, consider dropping for this dataset0974.4781 GLQTSQDARheavy2+493.2505984.4864326.433966.7102
FYALSASFEPFSNK01606.7668 FYALSASFEPFSNKlight2+804.39071606.7668337.815189.7571
FYALSASFEPFSNK01606.7668 FYALSASFEPFSNKheavy2+808.39781614.7810337.815189.7571
EQFLDGDGWTSR01409.6212 EQFLDGDGWTSRlight2+705.81791409.6212334.266482.5711
EQFLDGDGWTSR01409.6212 EQFLDGDGWTSRheavy2+710.82201419.6294334.266482.5711
GQTLVVQFTVKweak peptide - ratios off01218.6972 GQTLVVQFTVKlight2+610.35591218.6972330.829875.6119
GQTLVVQFTVKweak peptide - ratios off01218.6972 GQTLVVQFTVKheavy2+614.36301226.7114330.829875.6119
sp|O00299|CLIC1_HUMAN Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LHIVQVVCKPrecursor and transitions changed to improve signal01094.6270 LHIVQVVCKlight2+548.32081094.6270328.596571.0896
LHIVQVVCKPrecursor and transitions changed to improve signal01094.6270 LHIVQVVCKheavy2+552.32791102.6412328.596571.0896
YLSNAYAR0956.4716 YLSNAYARlight2+479.2431956.4716326.109866.0538
YLSNAYAR0956.4716 YLSNAYARheavy2+484.2472966.4798326.109866.0538
IEEFLEAVLCPPR01571.8018 IEEFLEAVLCPPRlight3+524.94121571.8018326.146969.3852
IEEFLEAVLCPPR01571.8018 IEEFLEAVLCPPRheavy3+528.27731581.8100326.146969.3852
GVTFNVTTVDTK01280.6612 GVTFNVTTVDTKlight2+641.33791280.6612331.945277.8705
GVTFNVTTVDTK01280.6612 GVTFNVTTVDTKheavy2+645.34501288.6754331.945277.8705
GFTIPEAFRRelative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01036.5342 GFTIPEAFRlight2+519.27441036.5342327.550968.9721
GFTIPEAFRRelative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01036.5342 GFTIPEAFRheavy2+524.27851046.5424327.550968.9721
sp|P15311|EZRI_HUMAN Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
IQVWHAEHRRelative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01174.5996 IQVWHAEHRlight3+392.54051174.5996318.944359.7332
IQVWHAEHRRelative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01174.5996 IQVWHAEHRheavy3+395.87661184.6078318.944359.7332
EDEVEEWQHR01355.5742 EDEVEEWQHRlight3+452.86531355.5742322.226064.1309
EDEVEEWQHR01355.5742 EDEVEEWQHRheavy3+456.20141365.5825322.226064.1309
SGYLSSER0897.4192 SGYLSSERlight2+449.7169897.4192325.046863.9014
SGYLSSER0897.4192 SGYLSSERheavy2+454.7210907.4275325.046863.9014
IALLEEAR0913.5233 IALLEEARlight2+457.7689913.5233325.336764.4884
IALLEEAR0913.5233 IALLEEARheavy2+462.7731923.5316325.336764.4884
SQEQLAAELAEYTAK01650.8101 SQEQLAAELAEYTAKlight3+551.27731650.8101327.579671.3051
SQEQLAAELAEYTAK01650.8101 SQEQLAAELAEYTAKheavy3+553.94871658.8243327.579671.3051
sp|Q16658|FSCN1_HUMAN Fascin OS=Homo sapiens GN=FSCN1 PE=1 SV=3
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
YLTAEAFGFK01145.5757 YLTAEAFGFKlight2+573.79511145.5757329.513672.9467
YLTAEAFGFK01145.5757 YLTAEAFGFKheavy2+577.80221153.5899329.513672.9467
FLIVAHDDGR01141.5880 FLIVAHDDGRlight3+381.53661141.5880318.345758.9310
FLIVAHDDGR01141.5880 FLIVAHDDGRheavy3+384.87271151.5963318.345758.9310
YLAPSGPSGTLK01189.6343 YLAPSGPSGTLKlight2+595.82441189.6343330.306774.5526
YLAPSGPSGTLK01189.6343 YLAPSGPSGTLKheavy2+599.83151197.6485330.306774.5526
VTGTLDANR0945.4880 VTGTLDANRlight2+473.7513945.4880325.912065.6535
VTGTLDANR0945.4880 VTGTLDANRheavy2+478.7554955.4962325.912065.6535
LSCFAQTVSPAEK01436.6970 LSCFAQTVSPAEKlight2+719.35581436.6970334.753883.5580
LSCFAQTVSPAEK01436.6970 LSCFAQTVSPAEKheavy2+723.36291444.7112334.753883.5580
sp|P02792|FRIL_HUMAN Ferritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LGGPEAGLGEYLFER01606.7991 LGGPEAGLGEYLFERlight2+804.40681606.7991337.815689.7583
LGGPEAGLGEYLFER01606.7991 LGGPEAGLGEYLFERheavy2+807.41691612.8193337.815689.7583
KPAEDEWGK01058.5033 KPAEDEWGKlight2+530.25891058.5033327.946369.7729
KPAEDEWGK01058.5033 KPAEDEWGKheavy2+533.26901064.5234327.946369.7729
sp|P39748|FEN1_HUMAN Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
HLTASEAKweak signal0855.4450 HLTASEAKlight2+428.7298855.4450324.291362.3714
HLTASEAKweak signal0855.4450 HLTASEAKheavy2+432.7369863.4592324.291362.3714
WSEPNEEELIK01372.6511 WSEPNEEELIKlight2+687.33281372.6511333.601081.2236
WSEPNEEELIK01372.6511 WSEPNEEELIKheavy2+691.33991380.6653333.601081.2236
SIEEIVR0844.4654 SIEEIVRlight2+423.2400844.4654324.093661.9712
SIEEIVR0844.4654 SIEEIVRheavy2+428.2441854.4737324.093661.9712
QLQQAQAAGAEQEVEK01726.8486 QLQQAQAAGAEQEVEKlight3+576.62351726.8486328.958473.1528
QLQQAQAAGAEQEVEK01726.8486 QLQQAQAAGAEQEVEKheavy3+579.29491734.8628328.958473.1528
LIADVAPSAIR01124.6554 LIADVAPSAIRlight2+563.33501124.6554329.137172.1841
LIADVAPSAIR01124.6554 LIADVAPSAIRheavy2+568.33911134.6636329.137172.1841