Custom Metric - Peptide IDs

Panorama QC folders provide several chromatography-based metrics to monitor system suitability over time. Additional metrics can be added by creating custom queries and defining custom metrics. In the example presented in this folder, we have added a custom metric to track the peptide ID counts in runs imported into the Skyline document in the folder. This involves adding an annotation in the Skyline document for capturing the peptide ID counts in each replicate in the document, creating a query in Panorama to return the values of this annotation, and defining a run-scoped custom metric using the query.
The steps are documented on this page: Custom Metric - Peptide ID Count