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|  DIA to inform Triple Quad Assay development | Homo sapiens | TSQ Altis,Q Exactive HF | No | 5 | DIA, SRM, MRM, targeted proteomics, quantitative proteomics, cerebrospinal fluid, Alzheimer's disease, neurodegenerative disease | Plubell DL, Huang E, Spencer SE, Poston KL, Mon... | PXD059611 |
| Urinary Metabolomic Profile in Children with Autism Spectrum Disorder | Homo sapiens | 6495B Triple Quadrupole LC/MS | Yes | 7 | Autism spectrum disorder, tryptophan, kynurenine, CARS | Osredkar, J.; Kumer, K.; Godnov, U.; Vrhovšek, ... | |
| Amylase/trypsin-inhibitor content and inhibitory activity of German common wheat landraces and modern varieties do not differ | Triticum aestivum | Q Exactive Plus | No | 4 | Amylase/trypsin inhibitors, non-celiac wheat sensitivity, landraces, old varieties, | | PXD060528 |
| Carrageenan-sulfatases from the marine bacterium Zobellia galactanivorans Dsij | Zobellia galactanivorans | Q Exactive | No | 3 | carrageenan, sulfatases, formylglycine, PRM | Chevenier A, Fanuel M, Sokolova E, Latorre DM, ... | PXD060597 |
| Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox | Homo sapiens | Orbitrap Eclipse | No | 1 | RBFOX2, HUES66, knockdown, PRM, tMS2 | | PXD060902 |
| Multiplex SRM MS method validation | Homo sapiens | TSQ Altis Plus | Yes | 54 | quantitative proteomics, human plasma, validation | | PXD061591 |
| Multiplex SRM MS method validation - serum | Homo sapiens | TSQ Altis Plus | Yes | 50 | quantitative proteomics, human serum, validation | | PXD061663 |
| Novel PFAS in Alligator Blood Discovered with Non-Targeted Ion Mobility-Mass Spectrometry | Alligator mississippiensis | 6560 Q-TOF LC/MS | No | 1 | per- and polyfluoroalkyl substances; biomonitoring; sentinel species | Anna K. Boatman, Gregory P. Kudzin, Kylie D. Ro... | |
| Quantitative assessment of a novel device designed for patient-centric sampling of dried plasma using targeted proteomics | Homo sapiens | TSQ Altis | Yes | 5 | microsampling, targeted proteomics, remote sampling, plasma proteomics, srm, selected reaction monitoring, stability | Hober A, Henricsson M, Ruckh T, Davidsson P, Ch... | PXD056596 |
| Differentiation of wheat high-molecular-weight glutenin subunits | Triticum aestivum | Q Exactive Plus | No | 9 | HMW-GS, Triticum aestivum L., wheat proteomics, untargeted nLC-MS/MS, parallel reaction monitoring | | PXD062483 |
| A novel hybrid high-speed mass spectrometer allows rapid translation from biomarker candidates to targeted clinical tests using 15N labeled proteins | Homo sapiens | Stellar,Orbitrap Astral | Yes | 12 | Stellar MS, 15N labeled proteins | | |
| Mass spectrometry-based quantification of proteins and post-translational modifications in dried blood: longitudinal sampling of patients with sepsis in Tanzania | Homo sapiens | Orbitrap Astral | No | 2 | glyco-DIA, N-glycopeptide, FragPipe | | |
| ATI, fructans and predictive assessment of technological quality of Sicilian tetraploid conservation and modern wheat varieties | Triticum durum ssp. durum | Q Exactive Plus | Yes | 3 | ATI, Fructan, Durum wheat, Quality, Sicilian conservation varieties | Bonarrigo M, Geisslitz S, Scherf KA, Messina B,... | PXD063353 |
| Protein composition in ancient wheats is determined by ploidy level | Triticum durum ssp. durum, Triticum aestivum subsp. spelta, Triticum monococcum | Q Exactive Plus | Yes | 4 | Amylase/trypsin-inhibitors, gliadin, gluten, wheat-related disorders | | PXD063405 |
| Selecting the Correct Autosampler Vial and Insert to Improve Reproducibility and Accuracy in Mass Spectrometry Analyses | | 6560 Q-TOF LC/MS | Yes | 2 | Per- and polyfluoroalkyl substances, PFAS, Autosampler Vial, Long-Term Storage, Mass Spectrometry | Not yet published | |
| Combination of in vivo and in vitro phosphoproteomics determines the PP2A target repertoire on proteome scale | Homo sapiens | Q Exactive HF-X | No | 1 | Phosphatase, PRM, OBIPhA, | Publication pending | PXD064018 |
| Tutorials on How to Use PRM Conductor, a Skyline External Tool | | | No | 21 | targeted, PRM, Conductor, tutorial, Thermo, Stellar | Remes, P. M.; Jacob, C. C.; Heil, L. R.; Shulma... | |
| Handling missingness by imputing retention time boundaries | Homo sapiens, Mus musculus | Orbitrap Astral,Orbitrap Fusion Lumos,Orbitrap Eclipse | Yes | 7 | missing-values, imputation, DIA | | |
| Evaluation of a modified Orbitrap Astral Zoom prototype for quantitative proteomics - Beyond identification lists | Homo sapiens, Gallus gallus | Orbitrap Astral,Orbitrap Astral Zoom,Stellar,Orbitrap Exploris 480,Orbitrap Ascend,Orbitrap Fusion Lumos | No | 6 | ions, calibration, poisson statistics, astral, astral zoom, instrument comparison | Hsu C, Shulman N, Stewart H, Petzoldt J, Pashko... | PXD064536 |
| Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer | Homo sapiens, Gallus gallus | Orbitrap Exploris 480,Stellar | No | 9 | PRM, targeted proteomics, Alzheimer's disease, Parkinson's disease, assay development | Publication pending | PXD065471 |