| Created | Share | Title | Organism | Instrument | Spike In | Publication | Runs | Folder |
|---|
| 2019-01-09 | |  Juvenile geoduck ctenidia tissue after summer deployment in Puget Sound, WA | Pacific geoduck | TSQ Vantage,Orbitrap Fusion Lumos | No | Pacific geoduck (Panopea generosa) resilience t... | 2 | UW Roberts Lab - Geoduck-OA-eelgrass |
| 2018-12-20 | | Search for synaptic biomarkers of Alzheimer’s disease | Homo sapiens | QTRAP 5500 | Yes | Lleó A, Núñez-Llaves R, Alcolea D, Chiva C, Bal... | 4 | UPF CRG - Sant Pau_AD synaptic |
| 2018-12-05 | | Multiplex assay for quantification of acute phase proteins and immunoglobulin A in dried blood spots | Homo sapiens | 6495B Triple Quadrupole LC/MS,6495A Triple Quadrupole LC/MS | Yes | Vidova, V., Stuchlikova, E., Vrbova, M., Almasi... | 12 | U. Masaryk-Vidova et al. JPR.2018 |
| 2018-11-30 | | Improving Precursor Selectivity in Data Independent Acquisition Using Overlapping Windows | Saccharomyces cerevisiae, Bos taurus | Q Exactive | Yes | | 11 | MacCoss - Improving Precursor Selectivity in Data Independent Acquisition Using Overlapping Windows |
| 2018-10-10 | | ATI in Ancient Wheats | Triticum | TSQ Vantage,LTQ Orbitrap Velos | Yes | | 7 | Leibniz Institute - ATI in Ancient Wheats |
| 2018-10-05 | | Single-point Calibration | Saccharomyces cerevisiae | Q Exactive HF,TSQ Altis | No | | 2 | MacCoss - Single-point Calibration |
| 2018-10-04 | | Plasmalogen Quantification during Human Cytomegalovirus Infection | Human, Human Cytomegalovirus | LTQ Orbitrap XL | No | Infection-Induced Peroxisome Biogenesis Is a Me... | 3 | Cristea Lab - Plasmalogen HCMV |
| 2018-09-17 | | Carrier-assisted single-tube processing approach for targeted proteomics analysis of low numbers of mammalian cells | Homo sapiens | TSQ Vantage | Yes | | 3 | PNNL - Carrier-assisted LC-SRM |
| 2018-08-30 | | Layers of regulation on cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae | Saccharomyces cerevisiae | Q Exactive Plus | Yes | Kelliher CM, Foster MW, Motta FC, Deckard A, So... | 4 | Duke Proteomics Core - Layers of regulation on cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae |
| 2018-08-22 | | Enhanced validation of antibodies for research applications | Homo sapiens | Q Exactive HF | Yes | Edfors F, Hober A, Linderbäck K, Maddalo G, Azi... | 2 | KTH Uhlen Lab - Western blot |
| 2018-08-17 | | Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS | Sus scrofa, Bos taurus, Homo sapiens | Velos Plus,HCTultra | No | Ashwood C, Lin CH, Thaysen-Andersen M, Packer N... | 7 | Macquarie U - Glycan Isomer Discrimination Product Ions |
| 2018-08-17 | | Utilisation of a dextran ladder to standardise PGC-LC-MS-based glycomics | Homo sapiens, Sus scrofa, Bos taurus | Velos Plus | No | Ashwood C, Pratt B, MacLean B, PackerNH. Utiliz... | 15 | Macquarie U - Dextran ladder to standardise PGC-LC-MS-based glycomics |
| 2018-08-01 | | Regulation of UCP1 and Mitochondrial Metabolism in Brown Adipose Tissue by Reversible Succinylation | Mus musculus | TripleTOF 5600 | No | submission to cell | 1 | Schilling - BrownAdiposeTissue |
| 2018-07-05 | | Identification of novel protein lysine acetyltransferases in Escherichia coli | Escherichia coli | TripleTOF 6600 | No | D.G. Christensen, J.G. Meyer, J.T. Baumgartner,... | 2 | Schilling - Wolfe_KAT_2018 |
| 2018-06-11 | | targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins | Escherichia coli | Agilent 1290-6460 | No | Batth, Tanveer S., et al. "A targeted proteomic... | 45 | JBEI - A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins |
| 2018-06-11 | | A Kinetic-Based Approach to Understanding Heterologous Mevalonate Pathway Function in E. Coli | Escherichia coli | Agilent 1290-6460 | No | Weaver, Lane J., et al. "A kinetic‐based approa... | 1 | JBEI - Kinetic approach proteomic data |
| 2018-06-11 | | Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production | Escherichia coli | AB Sciex 5500 | No | Alonso-Gutierrez, Jorge, et al. "Metabolic engi... | 1 | JBEI - Limonene Proteomic Data |
| 2018-06-11 | | Modular Engineering of L-Tyrosine Production in Escherichia coli | Escherichia coli | AB Sciex 4000 Q-trap | No | Juminaga, Darmawi, et al. "Modular engineering ... | 1 | JBEI - Tyrosine pathway engineering proteomic data |
| 2018-05-25 | | Quality Assessment and Interference Detection in Targeted Mass Spectrometry Data using Machine Learning | Human | QTRAP 5500 | Yes | Toghi Eshghi S, Auger P, Mathews WR. Quality as... | 3 | gRED - Automated QC of Targeted MS Data |
| 2018-05-22 | | HR-SRM-baseds analysis of mouse/human SGLT2 in kidney and heart tissue. | Mus musculus/Homo sapiens | TripleTOF5600+ | No | Mustroph et al., ESC Heart Failure, in revision... | 1 | IfADo - Mustroph_SGLT2 |
| 2018-04-19 | | Parallel Reaction Monitoring on a Q Exactive Mass Spectrometer Increases Reproducibility of Phosphopeptide Detection in Bacterial Phosphoproteomics Measurements | E. coli | Q exactive HF | No | Taumer C, Griesbaum L, Kovacevic A, Soufi B, Na... | 5 | U of Tuebingen - Ecoli_PRM_Phosphoproteomics |
| 2018-04-17 | | Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells | Homo sapiens | TSQ Vantage | No | | 12 | PNNL - Carrier-assisted targeted proteomics |
| 2018-03-27 | | Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer | Homo sapiens | Waters Xevo TQ-XS | Yes | | 2 | PaesLeme - SRM Saliva |
| 2018-03-22 | | Targeted Quantification of the Peroxisome Proteome during Human Cytomegalovirus Infection | Human, Human Cytomegalovirus | Q-Exactive HF | No | Infection-Induced Peroxisome Biogenesis Is a Me... | 1 | Cristea Lab - Peroxisome PRM HCMV |
| 2018-03-22 | | Identification of functional TEX101 interactome through proteomic profiling of human spermatozoa homozygous for a missense variant rs35033974 | Homo sapiens | Q ExactiveTM Plus Hybrid Quadrupole-Orbitrap and TSQ QuantivaTM triple quadrupole mass spectrometer | Yes | Schiza, C., Korbakis, D., Jarvi, K., Diamandis,... | 5 | Diamandis Lab - Schiza et al. TEX101 polymorphism |
| 2018-03-21 | | Serum glycoprotein biomarker validation for esophageal adenocarcinoma - PROBE-NET cohort dataset | Human | Agilent 6490 QQQ | Yes | Shah AK, Hartel G, Brown I, Winterford C, Na R,... | 4 | QIMR Berghofer - EAC LeMBA Validation PROBE-NET Cohort |
| 2018-03-21 | | Serum glycoprotein biomarker validation for esophageal adenocarcinoma - Ochsner cohort dataset | Human | Agilent 6490 QQQ | Yes | Shah AK, Hartel G, Brown I, Winterford C, Na R,... | 4 | QIMR Berghofer - EAC LeMBA Validation Ochsner Cohort |
| 2018-03-15 | | PknG physiological substrates | Mycobacterium bovis BCG | QExactive | No | Kehilwe C Nakedi, Bridget Calder, Mousumi Barne... | 1 | Blackburn Lab - PknG physiological substrates |
| 2018-03-08 | | Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. Journal of The American Society for Mass Spectrometry | Bos taurus, Saccharomyces cerevisiae | 6560 Q-TOF LC/MS | Yes | MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, ... | 5 | MacLean - Baker IMS |
| 2018-03-05 | | Discovery of a testis-specific complex TEX101-DPEP3 and selection of its disrupting antibodies | Homo sapiens | TSQ Quantiva triple quadrupole (Thermo Scientific) | Yes | Schiza, C., Korbakis, D., Panteleli, E., Jarvi,... | 4 | Diamandis Lab - Schiza et al., TEX101-DPEP3 protein complex discovery and validation |
| 2018-01-31 | | Monitoring molecular contaminants and interferences in proteomic data sets | | | No | Matthew J. Rardin | 1 | Amgen - Molecular Contaminants |
| 2018-01-26 | | Mass spectrometry identification and quantitation of proteins from small pools of developing auditory and vestibular cells | Mouse | Q Exactive HF | No | | 3 | Barr-Gillespie - Pou4f3-Gfp FACs DIA |
| 2018-01-23 | | Global, site-resolved, quantitative analysis of the yeast redoxome | Saccharomyces cerevisiae | Orbitrap Elite | No | Ulrike Topf, Ida Suppanz, Lukasz Samluk, Lidia ... | 5 | Warscheid Lab - yeast_oxICAT |
| 2018-01-22 | | Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS) | Bos taurus | TSQ Quantum,TSQ Vantage,4000 QTRAP,QTRAP 5500,6410 Triple Quadrupole LC/MS,6460 Triple Quadrupole LC/MS,Xevo TQ-XS | No | Abbatiello SE, Mani DR, Schilling B, Maclean B,... | 15 | Study_9S |
| 2018-01-03 | | Targeted Proteomics of HDL in People With Type 2 Diabetes | Human | TSQ Vantage | No | | 2 | Vaisar - HDL_T2D_PlosOne |
| 2017-12-18 | | Curated DIA assay for consistent ecological proteomics of threespine sticklebacks (Gasterosteus aculeatus) | Gasterosteus aculeatus | ImpactHD UHR-QTOF | No | J. Li, B.B. Levitan, S. Gomez-Jimenez and D. Kü... | 4 | KueltzLab - JoLi-01 |
| 2017-11-29 | | Measurement by a Novel LC-MS/MS Methodology of Vitamin D–Binding Protein | Human | Q Exactive Plus, Thermo Fischer | Yes | Henderson CM, Lutsey PL, Misialek JR, Laha TJ, ... | 1 | Vitek - Vitamin D |
| 2017-11-20 | | Quantification of Site-Specific Protein Lysine Acetylation and Succinylation Stoichiometry using Data-Independent Acquisitions (DIA) Mass Spectrometry --Protocol Example | Bovine | TripleTOF 5600 | No | Lei Wei, Jesse G. Meyer, Birgit Schilling "Quan... | 1 | Schilling - JoVEsuccBSA |
| 2017-11-02 | | Nitric oxide prevents Aft1 activation and metabolic remodeling in Frataxin-deficient yeast | Saccharomyces cerevisiae | Agilent 6420 Triple Quadrupole Spectrometer | Yes | Alsina D, Ros J, Tamarit J. Redox Biology.
Vo... | 1 | U. of Lleida - Yeast |
| 2017-11-02 | | SpkG kinase phosphorylates the ferredoxin 5 protein in Synechocystis 6803 | Synechocystis 6803 | TSQ Vantage | No | FEBS Lett, in submission | 1 | U of Turku - SpkG-Fd5-SYN_GT |
| 2017-10-25 | | Targeted proteomics in triple negative breast cancer on FFPE samples | Homo sapiens | Orbitrap Fusion Lumos | Yes | 1.Gámez-Pozo, A. et al. Prediction of adjuvant ... | 2 | Chiva - La Paz_TN_Breast_Cancer |
| 2017-10-17 | | DDR panel radiation response | Homo sapiens | 6500 QTRAP | No | Whiteaker JR, Zhao L, Saul R, Kaczmarczyk JA, S... | 3 | Paulovich - DDR_assay_panel_radiation_response |
| 2017-10-09 | | MEERCAT: MULTIPLEXED EFFICIENT CELL FREE EXPRESSION OF RECOMBINANT QconCATS FOR LARGE SCALE ABSOLUTE PROTEOME QUANTIFICATION | | SCIEX QT5500 | Yes | | 6 | EBFP - Meercat |
| 2017-09-27 | | The conservation of sirtuin lipoamidase activity in bacteria as a regulator of metabolic enzyme complexes | E. coli | Q-Exactive, Orbitrap Velos | No | Rowland EA, Greco TM, Snowden CK, McCabe AL, Si... | 5 | Cristea - CobB PRM |
| 2017-09-21 | | Streptococcus pyogenes infection and the human proteome with a special focus on the IgG-cleaving enzyme IdeS | Human, Streptococcus pyogenes | TSQ Vantage, TSQ Quantiva | No | Christofer A. Q. Karlsson, Sofia Järnum, Lena W... | 2 | Lund University IMP - IdeS_activity_Human_Samples |
| 2017-09-21 | | Cellular signaling underlying GSIS in pancreatic β-cells | Rat | Thermo QE-HF | No | Kang T, Jensen P, Huang H, Lund Christensen G, ... | 1 | U of So Denmark - MCP-PRM_Skyline |
| 2017-07-05 | | A mass spectrometry-based proteomic analysis of Homer2-interacting proteins in the mouse brain | Mouse | Orbitrap Elite, TSQ Quantiva | No | Scott P. Goulding, Karen K. Szumlinski, Candice... | 3 | MacCoss - Homer2 Interactome |
| 2017-06-21 | | MSstatsQC: Longitudinal system suitability monitoring and quality control for targeted proteomic experiments | Homo sapiens, Bovine | Triple Quadrupoles | No | Dogu, E, Mohammad-Taheri, S, Abbatiello, SE et ... | 8 | Schilling - Longitudinal SSS |
| 2017-06-14 | | An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics | Bartonella henselae strain Houston-1 (Bhen) | Orbitrap Fusion Mass Spectrometer (Thermo Fisher Scientific) | No | Ulrich Omasits, Adithi R. Varadarajan, Michael ... | 2 | Wollscheid - Bartonella_Proteogenomics |
| 2017-05-18 | | Quantification of Mutant SPOP Proteins in Prostate Cancer | Homo sapiens | TSQ Vantage, Waters NanoACQUITY UPLC | Yes | | 16 | PNNL - Mutant SPOP Proteins |
| 2017-05-03 | | Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer | Homo sapiens | TSQ Vantage, Waters NanoACQUITY UPLC | No | | 70 | PNNL _ SRM Ovarian Biomarkers |
| 2017-05-03 | | PSB33 sustains Photosystem II D1 protein under fluctuating light conditions | Arabidopsis thaliana Col-0 | TSQ vantage Thermo Scientific | No | | 1 | UTurkuPlantBio - PSB33 |
| 2017-04-20 | | Proteomics analysis identifies orthologs of human chitinase-like proteins as inducers of tube-morphogenesis defects in Drosophila | Drosophila melanogaster | Thermo TSQ Vantage 2 | No | Sandra G. Zimmerman, Gennifer E. Merrihew, Mich... | 2 | Berg - Skyline_Analysis_Idgfs |
| 2017-04-17 | | Proteomic assay development for reproductive maturation state determination in Geoduck: towards a non-invasive proteomic assay for improving aquaculture | Panopea generosa | Thermo Vantage | No | Emma B. Timmins-Schiffman, Grace A Crandall, Br... | 2 | Nunn - Geoduck Reproduction |
| 2017-04-13 | | Multiplexed MRM-based Protein Quantitation Using Two Different Stable Isotope Labeled Peptides for Calibration | | | No | André LeBlanc, Sarah A. Michaud, Andrew J. Perc... | 16 | Borchers Lab - Double SIS-JPR |
| 2017-03-03 | | Spatially and temporally resolved protein interaction networks in living cells. | Human | TSQ Quantiva | No | B. T. Lobingier, R. Hüttenhain, K. Eichel, A. Y... | 2 | Krogan - GPCR-APEX |
| 2017-02-17 | | Inactivation of iron-sulfur cluster biogenesis regulator SufR in Synechocystis sp. PCC 6803 induces unique iron-dependent protein-level responses | Synechocystis sp. PCC 6803 | TSQ Vantage | No | Linda Vuorijoki, Arjun Tiwari, Pauli Kallio, Ev... | 1 | UTurku - SufR-SRM |
| 2017-02-13 | | Stoichiometric surface density model | Streptococcus pyogenes | Thermo TSQ Quantiva | Yes | Kristoffer Sjöholm, Ola Kilsgård, Johan Teleman... | 2 | Lund U. IMP - Stoichiometric Density Model |
| 2017-01-25 | | Quantitative mass spectrometry analysis of PD-L1 protein expression, N-glycosylation and expression stoichiometry with PD-1 and PD-L2 in human melanoma | Homo sapiens | Q Exactive Plus | Yes | Morales-Betanzos CA, Lee H, Gonzalez-Ericsson P... | 5 | Liebler - Melanoma Paper |
| 2017-01-10 | | An optimized chromatographic strategy for multiplexing in parallel reaction monitoring mass spectrometry: Insights from quantitation of activated kinases | Homo sapiens | Thermo Orbitrap Q Exactive Plus | No | Urisman A, Levin RS, Gordan JD, Webber JT, Hern... | 2 | UCSF-MSF MIB-PRM paper |
| 2016-12-01 | | Photosynthesis-related phosphopeptides in Synechocystis 6803 | Synechocystis sp. PCC 6803 | TSQ Vantage | Yes | Martina Angeleri, Dorota Muth-Pawlak, Eva-Mari ... | 3 | UTurku - Angeleri_JProtRes_2016 |
| 2016-11-16 | | Impact of cystinosin glycosylation on protein stability by differential dynamic SILAC | Human | Qexactive plus | No | Nathalie Nevo, Lucie Thomas, Cerina Chhuon, Zuz... | 6 | Guerrera - 3SDXiS |
| 2016-11-15 | | Time-resolved proteomics vs. ribosome profiling reveals translation dynamics under stress | Homo Sapiens | QTRAP 5500 (SCIEX) | No | Tzu-Yu Liu, Hector H. Huang,
Diamond Wheeler, ... | 9 | Wiita - Protein Translation Model SRM data |
| 2016-10-31 | | Plastin 1 widens stereocilia by transforming actin filament packing from hexagonal to liquid | Mouse | Orbitrap Fusion | Yes | Krey JF, Krystofiak ES, Dumont RA, Vijayakumar ... | 3 | Barr-Gillespie - Stereocilia Crosslinker Targeted Data |
| 2016-10-26 | | Osmolality/ salinity responsive enhancers (OSREs) control induction of osmoprotective genes in euryhaline fish | Oreochromis mossambicus | ImpactHD UHR-QTOF | No | Wang X. and Kültz D | 2 | Kueltz - Wang and Kultz - 2016_1 |
| 2016-10-20 | | PECAN - A Library Free Peptide Detection Tool for DIA Data | Human, Yeast | Q-Exactive, Q-Exactive HF, TSQ-Vantage, TSQ-Quantiva | No | | 5 | PECAN - A Library Free Peptide Detection Tool for DIA Data |
| 2016-10-18 | | Robust Label-Free, Quantitative Profiling of Circulating Plasma Microparticle Associated Proteins | Human | QExactive | No | Braga-Lagache S, Buchs N, Iacovache MI, Zuber B... | 2 | Lagache - N1OHMk |
| 2016-10-17 | | Acclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1 in cyanobacteria | Synechocystis sp. PCC 6803 | TSQ Vantage | No | Georg J, Kostova G, Vuorijoki L, Schön V, Kadow... | 2 | UTurku - IsaR1 |
| 2016-10-07 | | FLNc Calpain GluC SRM Analysis | Human | QExactive Plus | No | Lena Reimann, Heike Wiese, Yvonne Leber, Anja N... | 1 | Warscheid Lab - FLNc Calpain GluC SRM |
| 2016-10-03 | | ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments | Yeast | Thermo Scientific Q Exactive | Yes | Choi M, Eren-Dogu ZF, Colangelo CM, Cottrell JS... | 9 | iPRG 2015 |
| 2016-09-22 | | Dynamic phosphorylation of apoptosis signal regulating kinase 1 (ASK1) in response to oxidative and electrophilic stress | | Q Exactive plus | No | Carlos Morales Betanzos, Joel D. Federspiel, Am... | 2 | Liebler - ASK PTM |
| 2016-09-21 | | A general method for targeted quantitative cross-linking mass spectrometry | Bovine, Human | Q-Exactive Plus, Q-Exactive Plus HF | No | Juan D. Chavez, Jimmy K. Eng, Devin K. Schweppe... | 2 | Bruce - PRM_XL_manuscript |
| 2016-08-08 | | Detection of Low Abundance Ocean Bacteria Peptides | Ruegeria pomeroyi | Thermo Vantage | No | | 2 | Nunn - Detection of Low Abundance Ocean Bacteria Peptides |
| 2016-07-29 | | SELECTIVE AND SENSITIVE QUANTIFICATION OF THE CYTOCHROME P450 3A4 PROTEIN IN HUMAN LIVER HOMOGENATES THROUGH MULTIPLE REACTION MONITORING MASS SPECTROMETRY | Human | 5500QTRAP Sciex | Yes | Cieślak A, Kelly I, Trottier J, Verreault M, Wu... | 2 | CRCHUL - CYP3A4_microsomes_homogenates |
| 2016-07-13 | | Gadd45a Promotes Skeletal Muscle Atrophy by Forming a Complex with the Protein Kinase MEKK4 | Mouse | TripleTOF 5600 | No | Bullard, S.A., Seo, S., Schilling, B., Dyle, M.... | 1 | Schilling - Chris Adams_Gadd45a |
| 2016-06-14 | | Identification and characterization of protein acetylation in Neisseria gonorrhoeae | Neisseria gonorrhoeae | Triple TOF 5600 | No | Post DMB, Schilling B, Reinders LM, D'Souza AK,... | 1 | Schilling - NGackA |
| 2016-06-08 | | Robust temporal profiling of GRB2 protein complexes in primary T cells using SWATH mass spectrometry | Mouse | 5600 Triple-TOF | No | Etienne Caron, Romain Roncagalli, Takeshi Hase,... | 4 | Aebersold - GRB2 interactome by AP-SWATH |
| 2016-06-02 | | PRM analysis of EC uterine aspirate | Homo sapiens | QExactive Plus | Yes | Martinez-Garcia E, Lesur A, Devis L, Campos AR,... | 1 | Domon - EC |
| 2016-05-25 | | Quantifiable peptide tags for targeted proteomics. | Homo sapiens | TSQ Vantage | Yes | Giel Vandemoortele, An Staes, Giulia Gonnelli, ... | 9 | Staes - PQS_peptides |
| 2016-05-20 | | Development, Validation, and Application of a MRM with SIS Peptide Strategy to Quantify Multiplexed Panels of Proteins in Mouse Plasma and Heart Tissues | Mus musculus | Agilent’s 6490 Triple Quadrupole | Yes | | 2 | Genome BC Proteomics Centre - PC Mouse uEiHq2 |
| 2016-05-12 | | In vivo kinase assay of mouse FLNc | C2C12 mouse myotubes | Thermo Scientific Orbitrap Velos Elite | No | Lena Reimann, Heike Wiese, Yvonne Leber, Anja N... | 1 | Warscheid Lab - C-terminal FLNc in vivo kinase assays |
| 2016-05-12 | | In vitro kinase assay of human and mouse FLNc domain 23-24 | Human, Mouse | Obritrap Velos Elite, QExactive Plus | No | Lena Reimann, Heike Wiese, Yvonne Leber, Anja N... | 1 | Warscheid Lab - FLNc d23-24 in vitro kinase assay |
| 2016-05-06 | | Conserved protein abundance pattern of the EGFR-MAPK pathway reveals its regulatory architecture | Pacific Northwest National Laboratory | TSQ Vantage | Yes | Tujin Shi, Mario Niepel, Jason E. McDermott, Yu... | 20 | PNNL_EGFR_pathway |
| 2016-03-23 | | Annexin A5 is the Most-Abundant Membrane-Associated Protein in Stereocilia but is Dispensable | Mouse | Orbitrap Fusion Tribrid mass spectrometer | No | Krey JF, Drummond M, Foster S, Porsov E, Vijaya... | 2 | Barr-Gillespie - Annexin A5 |
| 2016-03-18 | | Optimized protocol for quantitative multiple reaction monitoring-based proteomic analysis of formalin-fixed, paraffin embedded tissues | Human | Sciex 5500 QTRAP | Yes | Kennedy JJ, Whiteaker JR, Schoenherr RM, Yan P,... | 7 | Paulovich - FFPE_MRM_optimization |
| 2016-03-07 | | Targeted proteomics coming of age - SRM, PRM and DIA performance evaluated from a core facility perspective | Homo sapiens | TSQ Vantage, QTRAP5500, Q Exactive, Q Exactive HF and tripleTOF5600 | Yes | Tobias Kockmann, Christian Trachsel, Christian ... | 12 | Kockmann - MSQC1 |
| 2016-02-18 | | Differential light-dependent phosphorylation of Ser and Thr residues regulates plant STN7 kinase | Arabidopsis thaliana | TSQ vantage Thermo Scientific | No | | 14 | UTurku-STN7 |
| 2016-02-08 | | Bacterial interactomes: interacting protein partners share similar function and are validated in independent assays more frequently than previously reported | Desulfovibrio vulgaris Hildenborough wild-type ATCC29579 | Thermo LTQ Velos Orbitrap, Thermo LTQ XL and Sciex QSTAR XL | No | M. Shatsky, S. Allen, B.L. Gold, N.L. Liu, T.R.... | 1 | Witkowska_DVH_TAP |
| 2015-12-21 | | Proteomic profile of deleted in breast cancer 1 (DBC1) protein-protein interactions | Homo sapiens | Orbitrap Velos | No | Giguère SS, Guise AJ, Jean Beltran PM, Joshi PM... | 1 | Greco - DBC1 SRM |
| 2015-12-18 | | A quantitative tagless co-purification method to validate and identify protein-protein interactions | Desulfovibrio vulgaris Hildenborough wild-type ATCC29579 | AB Sciex 4800 TOF/TOF, AB Sciex 5800 TOF/TOF | No | Maxim Shatsky, Ming Dong, Haichuan Liu, Lee Lis... | 1 | Biggin - Tagless_analysis_of_protein-protein_interactions_in_Desulfovibrio_vulgaris |
| 2015-12-07 | | Assembly dynamics and stoichiometry of the apoptosis signal-regulating kinase (ASK) signalosome in response to electrophile stress | Homo sapiens | Q Exactive Plus | No | Joel D. Federspiel, Simona G. Codreanu, Amy M. ... | 4 | Liebler - ASK manuscript |
| 2015-10-27 | | Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry. | Human, Mouse, Yeast | TripleTOF, Orbitrap/HCD | No | Parker SJ, Rost H, Rosenberger G, Collins BC, M... | 1 | Parker - CiRT_Peptides |
| 2015-10-15 | | Renal proteomes of marine and FW sticklebacks | Gasterosteus aculeatus | ImpactHD UHR-QTOF | No | Journal of Proteomics. 2015 Sep;14(9):2331-40. ... | 1 | Kultz et al. (2015) Renal proteomes of marine and FW sticklebacks. J Proteomics |
| 2015-08-10 | | Development of a quantitative SRM-based proteomics method to study iron metabolism of Synechocystis sp. PCC 6803 | Synechocystis sp. PCC 6803 | TSQ Vantage | No | Development of a quantitative SRM-based proteom... | 3 | Muth-Pawlak - SRM_irondepr_2015 |
| 2015-08-07 | | Population-specific plasma proteomes of marine and freshwater three-spined sticklebacks | Gasterosteus aculeatus | ImpactHD (Bruker) | No | Proteomics Volume 15, Issue 23-24, December 201... | 1 | Kultz et al. (2015) Population-specific plasma proteomes of marine and freshwater three-spined sticklebacks. Proteomics |
| 2015-07-17 | | Multiplexed, scheduled high resolution (sMRM-HR) acquisition on a full scan QqTOF instrument with integrated data-dependent and targeted mass spectrometric workflows. | B. taurus, S. cerevisiae, E. coli | TripleTOF 5600 | No | Multiplexed, scheduled high resolution sMRM-HR ... | 4 | Schilling - MRM_HR_TripleTOF_MS2_FullScanFiltering |
| 2015-06-18 | | MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments | Mouse | TripleTOF 5600 | No | Rardin MJ, Schilling B, Cheng L, MacLean BX, So... | 8 | Schilling - MS1_MS2_SWATH |
| 2015-06-16 | | Quantification of HER2 by Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded Breast Cancer Tissues | Human | TSQ Vantage Thermo | Yes | Steiner et. al, Mol Cell Proteomics. 2015 Oct;1... | 13 | Steiner - HER2 quantification in FFPE breast cancer tissues |
| 2015-06-14 | | Ariadne’s thread: a robust software solution leading to automated absolute and relative quantification of SRM data | synthetic peptides, Drosophila melanogaster | TSQ Quantum EMR | Yes | Nasso et. al.; Ariadne's Thread: A Robust Softw... | 3 | Goetze - Ariadne |
| 2015-06-09 | | Characterization of a human pluripotent stem cell-derived model of neuronal development using multiplexed targeted proteomics | Human | TSQ Vantage | Yes | Dunkley et al. (2015) Characterization of a hum... | 1 | Dunkley - Neuronal Development SRM |