06 Jul 2020 14:33:39,751 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
06 Jul 2020 14:33:39,775 INFO : Starting to import Skyline document from METRIC_Exploris_Dabney_Tox_All_QCs_2020-07-06_17-30-20.sky.zip
06 Jul 2020 14:33:39,786 INFO : Expanding METRIC_Exploris_Dabney_Tox_All_QCs.skyd
06 Jul 2020 14:33:40,958 INFO : Expanding METRIC_Exploris_Dabney_Tox_All_QCs.sky.view
06 Jul 2020 14:33:41,009 INFO : Expanding METRIC_Exploris_Dabney_Tox_All_QCs.sky
06 Jul 2020 14:33:41,041 WARN : The version of this Skyline document is 20.11. This is newer than the highest supported version 4.1
06 Jul 2020 14:33:41,055 INFO : 2% Done
06 Jul 2020 14:33:42,452 INFO : Inserting gi|162648|gb|AAA51411.1|
06 Jul 2020 14:33:42,545 INFO : 9% Done
06 Jul 2020 14:33:43,176 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'
06 Jul 2020 14:33:43,179 ERROR: Bad value for type int : 2147483697
org.postgresql.util.PSQLException: Bad value for type int : 2147483697
at org.postgresql.jdbc.PgResultSet.toInt(PgResultSet.java:2841)
at org.postgresql.jdbc.PgResultSet.getInt(PgResultSet.java:2056)
at org.apache.tomcat.dbcp.dbcp2.DelegatingResultSet.getInt(DelegatingResultSet.java:623)
at org.apache.tomcat.dbcp.dbcp2.DelegatingResultSet.getInt(DelegatingResultSet.java:623)
at org.labkey.targetedms.SkylineDocImporter.insertAndUpdateId(SkylineDocImporter.java:1903)
at org.labkey.targetedms.SkylineDocImporter.insertTransitionChromInfo(SkylineDocImporter.java:1889)
at org.labkey.targetedms.SkylineDocImporter.insertTransitionChromInfos(SkylineDocImporter.java:1728)
at org.labkey.targetedms.SkylineDocImporter.insertTransition(SkylineDocImporter.java:1582)
at org.labkey.targetedms.SkylineDocImporter.insertPrecursor(SkylineDocImporter.java:1482)
at org.labkey.targetedms.SkylineDocImporter.insertPeptideOrSmallMolecule(SkylineDocImporter.java:1285)
at org.labkey.targetedms.SkylineDocImporter.insertPeptideGroup(SkylineDocImporter.java:1167)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:328)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:220)
at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:65)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:795)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1026)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor5780.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:564)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:832)
06 Jul 2020 14:33:43,298 ERROR: Bad value for type int : 2147483697
org.postgresql.util.PSQLException: Bad value for type int : 2147483697
at org.postgresql.jdbc.PgResultSet.toInt(PgResultSet.java:2841)
at org.postgresql.jdbc.PgResultSet.getInt(PgResultSet.java:2056)
at org.apache.tomcat.dbcp.dbcp2.DelegatingResultSet.getInt(DelegatingResultSet.java:623)
at org.apache.tomcat.dbcp.dbcp2.DelegatingResultSet.getInt(DelegatingResultSet.java:623)
at org.labkey.targetedms.SkylineDocImporter.insertAndUpdateId(SkylineDocImporter.java:1903)
at org.labkey.targetedms.SkylineDocImporter.insertTransitionChromInfo(SkylineDocImporter.java:1889)
at org.labkey.targetedms.SkylineDocImporter.insertTransitionChromInfos(SkylineDocImporter.java:1728)
at org.labkey.targetedms.SkylineDocImporter.insertTransition(SkylineDocImporter.java:1582)
at org.labkey.targetedms.SkylineDocImporter.insertPrecursor(SkylineDocImporter.java:1482)
at org.labkey.targetedms.SkylineDocImporter.insertPeptideOrSmallMolecule(SkylineDocImporter.java:1285)
at org.labkey.targetedms.SkylineDocImporter.insertPeptideGroup(SkylineDocImporter.java:1167)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:328)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:220)
at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:65)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:795)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1026)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor5780.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:564)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:832)