Copying experiment: Reproducible protein quantitation of 270 human proteins at increased depth using nanoparticle-based fractionation and reaction monitoring mass spectrometry with stable isotope-labelled internal standards

MRM Proteomics - Seer Proteograph

Job Status

Created: 2024-07-05 15:57:13
Modified: 2024-07-05 15:57:51
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Reproducible protein quantitation of 270 human proteins at increased depth using nanoparticle-based fractionation and reaction monitoring mass spectrometry with stable isotope-labelled internal standards
File Path: /data/labkey/files/Panorama Public/2024/MRM Proteomics - Seer Proteograph/@files/Experiment_1951.log
Files: Experiment_1951.log
Completed Runs: S-0536_H_sap_pano_2024-07-05_11-19-11.sky.zip

Log File


05 Jul 2024 15:57:13,648 INFO : Copying experiment "Reproducible protein quantitation of 270 human proteins at increased depth using nanoparticle-based fractionation and reaction monitoring mass spectrometry with stable isotope-labelled internal standards" from folder /MRM Proteomics/Seer Proteograph to /Panorama Public/2024/MRM Proteomics - Seer Proteograph
05 Jul 2024 15:57:13,649 INFO : =======================================
05 Jul 2024 15:57:13,684 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
05 Jul 2024 15:57:13,684 INFO :
05 Jul 2024 15:57:13,684 INFO : Exporting experiment.
05 Jul 2024 15:57:19,988 INFO : Exporting files metadata.
05 Jul 2024 15:57:19,991 INFO :
05 Jul 2024 15:57:19,991 INFO : Experiment export completed successfully.
05 Jul 2024 15:57:19,991 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
05 Jul 2024 15:57:20,014 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
05 Jul 2024 15:57:20,014 INFO :
05 Jul 2024 15:57:20,014 INFO : Importing experiment.
05 Jul 2024 15:57:20,035 INFO : Loading folder properties (folder type, settings and active modules)
05 Jul 2024 15:57:20,119 INFO : Done importing folder properties (folder type, settings and active modules)
05 Jul 2024 15:57:20,120 INFO : Loading container specific module properties
05 Jul 2024 15:57:20,124 INFO : Done importing container specific module properties
05 Jul 2024 15:57:20,125 INFO : Loading queries
05 Jul 2024 15:57:20,128 INFO : 1 query imported
05 Jul 2024 15:57:20,128 INFO : Done importing queries
05 Jul 2024 15:57:20,129 INFO : Loading etl definitions
05 Jul 2024 15:57:20,130 INFO : Loading wikis
05 Jul 2024 15:57:20,131 INFO : 0 wikis imported
05 Jul 2024 15:57:20,131 INFO : Done importing wikis
05 Jul 2024 15:57:20,133 INFO : Starting Data Class Importer
05 Jul 2024 15:57:20,133 INFO : No types XAR file to process.
05 Jul 2024 15:57:20,133 INFO : Finished Data Class Importer
05 Jul 2024 15:57:20,133 INFO : Starting to copy files
05 Jul 2024 15:57:20,133 INFO : Copied 0 files
05 Jul 2024 15:57:20,133 INFO : Ensuring exp.data rows exist for imported files
05 Jul 2024 15:57:20,204 INFO : Starting Sample Type Importer
05 Jul 2024 15:57:20,204 INFO : No types XAR file to process.
05 Jul 2024 15:57:20,204 INFO : Finished Sample Type Importer
05 Jul 2024 15:57:20,205 INFO : Loading xar
05 Jul 2024 15:57:21,314 INFO : Starting import from S-0536_H_sap_pano_2024-07-05_11-19-11.sky.zip
05 Jul 2024 15:57:21,316 INFO : Starting to import Skyline document from S-0536_H_sap_pano_2024-07-05_11-19-11.sky.zip
05 Jul 2024 15:57:21,317 INFO : Expanding S-0536_H_sap_pano.skyd
05 Jul 2024 15:57:21,948 INFO : Expanding S-0536_H_sap_pano.sky
05 Jul 2024 15:57:22,001 INFO : Reading Skyline file, S-0536_H_sap_pano.sky, to determine if the TransitionChromInfos in the document should be stored...
05 Jul 2024 15:57:22,094 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
05 Jul 2024 15:57:22,712 INFO : Inserting 60 kDa heat shock protein mitochondrial
05 Jul 2024 15:57:22,717 INFO : 1% Done
05 Jul 2024 15:57:22,772 INFO : Inserting 72 KDa type IV collagenase
05 Jul 2024 15:57:22,828 INFO : Inserting 78 kDa glucose-regulated protein
05 Jul 2024 15:57:22,882 INFO : Inserting A disintegrin and metalloproteinase with thrombospondin motifs 2
05 Jul 2024 15:57:22,887 INFO : 2% Done
05 Jul 2024 15:57:22,939 INFO : Inserting A disintegrin and metalloproteinase with thrombospondin motifs 20
05 Jul 2024 15:57:22,993 INFO : Inserting A disintegrin and metalloproteinase with thrombospondin motifs 9
05 Jul 2024 15:57:23,049 INFO : Inserting Actin, aortic smooth muscle
05 Jul 2024 15:57:23,105 INFO : Inserting Adhesion G protein-coupled receptor F5
05 Jul 2024 15:57:23,169 INFO : Inserting Adipocyte plasma membrane-associated protein
05 Jul 2024 15:57:23,173 INFO : 3% Done
05 Jul 2024 15:57:23,246 INFO : Inserting Adiponectin
05 Jul 2024 15:57:23,313 INFO : Inserting ADM
05 Jul 2024 15:57:23,382 INFO : Inserting Afamin
05 Jul 2024 15:57:23,387 INFO : 4% Done
05 Jul 2024 15:57:23,455 INFO : Inserting Alpha-1-acid glycoprotein 1
05 Jul 2024 15:57:23,515 INFO : Inserting Alpha-1-antichymotrypsin
05 Jul 2024 15:57:23,566 INFO : Inserting Alpha-1-antitrypsin
05 Jul 2024 15:57:23,570 INFO : 5% Done
05 Jul 2024 15:57:23,617 INFO : Inserting Alpha-1B-glycoprotein_VAR_018369
05 Jul 2024 15:57:23,668 INFO : Inserting Alpha-2-antiplasmin
05 Jul 2024 15:57:23,718 INFO : Inserting Alpha-2-HS-glycoprotein
05 Jul 2024 15:57:23,722 INFO : 6% Done
05 Jul 2024 15:57:23,771 INFO : Inserting Alpha-2-macroglobulin
05 Jul 2024 15:57:23,830 INFO : Inserting Angiogenin
05 Jul 2024 15:57:23,896 INFO : Inserting Angiopoietin-related protein 3
05 Jul 2024 15:57:23,961 INFO : Inserting Angiotensinogen
05 Jul 2024 15:57:24,031 INFO : Inserting Antithrombin-III
05 Jul 2024 15:57:24,036 INFO : 7% Done
05 Jul 2024 15:57:24,099 INFO : Inserting Apolipoprotein A-I
05 Jul 2024 15:57:24,164 INFO : Inserting Apolipoprotein A-II
05 Jul 2024 15:57:24,255 INFO : Inserting Apolipoprotein A-IV
05 Jul 2024 15:57:24,260 INFO : 8% Done
05 Jul 2024 15:57:24,335 INFO : Inserting Apolipoprotein B-100
05 Jul 2024 15:57:24,417 INFO : Inserting Apolipoprotein C-I
05 Jul 2024 15:57:24,489 INFO : Inserting Apolipoprotein C-II
05 Jul 2024 15:57:24,495 INFO : 9% Done
05 Jul 2024 15:57:24,563 INFO : Inserting Apolipoprotein C-III
05 Jul 2024 15:57:24,630 INFO : Inserting Apolipoprotein C-IV
05 Jul 2024 15:57:24,635 INFO : 10% Done
05 Jul 2024 15:57:24,710 INFO : Inserting Apolipoprotein D
05 Jul 2024 15:57:24,790 INFO : Inserting Apolipoprotein E
05 Jul 2024 15:57:24,863 INFO : Inserting Apolipoprotein F
05 Jul 2024 15:57:24,934 INFO : Inserting Apolipoprotein L1
05 Jul 2024 15:57:24,999 INFO : Inserting Apolipoprotein M
05 Jul 2024 15:57:25,059 INFO : Inserting Apolipoprotein(a)
05 Jul 2024 15:57:25,063 INFO : 11% Done
05 Jul 2024 15:57:25,125 INFO : Inserting Aromatase
05 Jul 2024 15:57:25,189 INFO : Inserting Atrial natriuretic peptide receptor 1
05 Jul 2024 15:57:25,250 INFO : Inserting Attractin
05 Jul 2024 15:57:25,255 INFO : 12% Done
05 Jul 2024 15:57:25,313 INFO : Inserting Autism susceptibility gene 2 protein
05 Jul 2024 15:57:25,377 INFO : Inserting B-cell scaffold protein with ankyrin repeats
05 Jul 2024 15:57:25,380 INFO : 13% Done
05 Jul 2024 15:57:25,442 INFO : Inserting Beta-2-glycoprotein 1
05 Jul 2024 15:57:25,504 INFO : Inserting Beta-2-microglobulin
05 Jul 2024 15:57:25,566 INFO : Inserting Beta-Ala-His dipeptidase
05 Jul 2024 15:57:25,570 INFO : 14% Done
05 Jul 2024 15:57:25,629 INFO : Inserting Beta-nerve growth factor
05 Jul 2024 15:57:25,692 INFO : Inserting Biotinidase
05 Jul 2024 15:57:25,752 INFO : Inserting C4b-binding protein alpha chain
05 Jul 2024 15:57:25,818 INFO : Inserting Cadherin-13
05 Jul 2024 15:57:25,879 INFO : Inserting Cadherin-5
05 Jul 2024 15:57:25,940 INFO : Inserting Calcitonin gene-related peptide 1
05 Jul 2024 15:57:25,945 INFO : 15% Done
05 Jul 2024 15:57:26,004 INFO : Inserting Calcitonin
05 Jul 2024 15:57:26,066 INFO : Inserting Calponin-1
05 Jul 2024 15:57:26,070 INFO : 16% Done
05 Jul 2024 15:57:26,142 INFO : Inserting Carbonic anhydrase 1
05 Jul 2024 15:57:26,207 INFO : Inserting Carboxypeptidase B2
05 Jul 2024 15:57:26,268 INFO : Inserting Carboxypeptidase N catalytic chain
05 Jul 2024 15:57:26,272 INFO : 17% Done
05 Jul 2024 15:57:26,331 INFO : Inserting Carboxypeptidase N subunit 2
05 Jul 2024 15:57:26,392 INFO : Inserting Cartilage acidic protein 1
05 Jul 2024 15:57:26,451 INFO : Inserting Cathelicidin antimicrobial peptide
05 Jul 2024 15:57:26,455 INFO : 18% Done
05 Jul 2024 15:57:26,512 INFO : Inserting Cation-independent mannose-6-phosphate receptor
05 Jul 2024 15:57:26,573 INFO : Inserting CD40 ligand
05 Jul 2024 15:57:26,632 INFO : Inserting CD44 antigen
05 Jul 2024 15:57:26,697 INFO : Inserting CD5 antigen-like
05 Jul 2024 15:57:26,757 INFO : Inserting cDNA FLJ53327, highly similar to Gelsolin (NOT REVIEWED)
05 Jul 2024 15:57:26,762 INFO : 19% Done
05 Jul 2024 15:57:26,822 INFO : Inserting Ceruloplasmin
05 Jul 2024 15:57:26,884 INFO : Inserting Cholesteryl ester transfer protein
05 Jul 2024 15:57:26,938 INFO : Inserting Cholinesterase
05 Jul 2024 15:57:26,942 INFO : 20% Done
05 Jul 2024 15:57:26,989 INFO : Inserting Chromogranin-A
05 Jul 2024 15:57:27,038 INFO : Inserting Claudin-5
05 Jul 2024 15:57:27,087 INFO : Inserting Clusterin
05 Jul 2024 15:57:27,092 INFO : 21% Done
05 Jul 2024 15:57:27,136 INFO : Inserting Coagulation factor IX
05 Jul 2024 15:57:27,183 INFO : Inserting Coagulation factor V
05 Jul 2024 15:57:27,234 INFO : Inserting Coagulation factor VII
05 Jul 2024 15:57:27,238 INFO : 22% Done
05 Jul 2024 15:57:27,287 INFO : Inserting Coagulation factor VIII
05 Jul 2024 15:57:27,334 INFO : Inserting Coagulation factor X
05 Jul 2024 15:57:27,380 INFO : Inserting Coagulation factor XI
05 Jul 2024 15:57:27,428 INFO : Inserting Coagulation factor XII
05 Jul 2024 15:57:27,475 INFO : Inserting Coagulation factor XIII A chain
05 Jul 2024 15:57:27,480 INFO : 23% Done
05 Jul 2024 15:57:27,532 INFO : Inserting Coagulation factor XIII B chain
05 Jul 2024 15:57:27,580 INFO : Inserting Collagen alpha-1(I) chain
05 Jul 2024 15:57:27,632 INFO : Inserting Collagen alpha-1(III) chain
05 Jul 2024 15:57:27,636 INFO : 24% Done
05 Jul 2024 15:57:27,683 INFO : Inserting Collagen alpha-1(XVIII) chain
05 Jul 2024 15:57:27,729 INFO : Inserting Collagen alpha-2(I) chain
05 Jul 2024 15:57:27,776 INFO : Inserting Complement C1q subcomponent subunit A
05 Jul 2024 15:57:27,781 INFO : 25% Done
05 Jul 2024 15:57:27,825 INFO : Inserting Complement C1q subcomponent subunit B
05 Jul 2024 15:57:27,871 INFO : Inserting Complement C1q subcomponent subunit C
05 Jul 2024 15:57:27,876 INFO : 26% Done
05 Jul 2024 15:57:27,928 INFO : Inserting Complement C1r subcomponent
05 Jul 2024 15:57:27,976 INFO : Inserting Complement C1r subcomponent-like protein
05 Jul 2024 15:57:28,032 INFO : Inserting Complement C1s subcomponent
05 Jul 2024 15:57:28,082 INFO : Inserting Complement C2
05 Jul 2024 15:57:28,129 INFO : Inserting Complement C3
05 Jul 2024 15:57:28,176 INFO : Inserting Complement C5
05 Jul 2024 15:57:28,182 INFO : 27% Done
05 Jul 2024 15:57:28,227 INFO : Inserting Complement component C6
05 Jul 2024 15:57:28,275 INFO : Inserting Complement component C7
05 Jul 2024 15:57:28,326 INFO : Inserting Complement component C8 alpha chain
05 Jul 2024 15:57:28,331 INFO : 28% Done
05 Jul 2024 15:57:28,377 INFO : Inserting Complement component C8 beta chain
05 Jul 2024 15:57:28,425 INFO : Inserting Complement component C9
05 Jul 2024 15:57:28,430 INFO : 29% Done
05 Jul 2024 15:57:28,478 INFO : Inserting Complement factor B
05 Jul 2024 15:57:28,527 INFO : Inserting Complement factor D
05 Jul 2024 15:57:28,578 INFO : Inserting Complement factor H
05 Jul 2024 15:57:28,583 INFO : 30% Done
05 Jul 2024 15:57:28,636 INFO : Imported 100 peptide groups.
05 Jul 2024 15:57:28,636 INFO : Inserting Complement factor I
05 Jul 2024 15:57:28,686 INFO : Inserting Complement_C4
05 Jul 2024 15:57:28,783 INFO : Inserting Corticosteroid-binding globulin
05 Jul 2024 15:57:28,836 INFO : Inserting C-reactive protein
05 Jul 2024 15:57:28,884 INFO : Inserting Creatine kinase B-type
05 Jul 2024 15:57:28,889 INFO : 31% Done
05 Jul 2024 15:57:28,937 INFO : Inserting Creatine kinase M-type
05 Jul 2024 15:57:28,983 INFO : Inserting Cystatin-C
05 Jul 2024 15:57:28,987 INFO : 32% Done
05 Jul 2024 15:57:29,033 INFO : Inserting Desmoplakin
05 Jul 2024 15:57:29,080 INFO : Inserting Dickkopf-related protein 1 and 2
05 Jul 2024 15:57:29,136 INFO : Inserting Di-N-acetylchitobiase
05 Jul 2024 15:57:29,141 INFO : 33% Done
05 Jul 2024 15:57:29,201 INFO : Inserting Elastin
05 Jul 2024 15:57:29,261 INFO : Inserting Endothelial lipase
05 Jul 2024 15:57:29,320 INFO : Inserting Endothelial protein C receptor
05 Jul 2024 15:57:29,325 INFO : 34% Done
05 Jul 2024 15:57:29,383 INFO : Inserting Epidermal growth factor receptor
05 Jul 2024 15:57:29,444 INFO : Inserting E-selectin
05 Jul 2024 15:57:29,508 INFO : Inserting Extracellular matrix protein 1
05 Jul 2024 15:57:29,567 INFO : Inserting Fatty acid-binding protein heart
05 Jul 2024 15:57:29,627 INFO : Inserting Ferritin heavy chain
05 Jul 2024 15:57:29,631 INFO : 35% Done
05 Jul 2024 15:57:29,688 INFO : Inserting Ferritin light chain
05 Jul 2024 15:57:29,751 INFO : Inserting Fetuin-B
05 Jul 2024 15:57:29,811 INFO : Inserting Fibrinogen alpha chain
05 Jul 2024 15:57:29,817 INFO : 36% Done
05 Jul 2024 15:57:29,875 INFO : Inserting Fibrinogen beta chain
05 Jul 2024 15:57:29,934 INFO : Inserting Fibrinogen gamma chain
05 Jul 2024 15:57:29,993 INFO : Inserting Fibronectin
05 Jul 2024 15:57:29,997 INFO : 37% Done
05 Jul 2024 15:57:30,055 INFO : Inserting Fibulin-1
05 Jul 2024 15:57:30,108 INFO : Inserting Ficolin-2
05 Jul 2024 15:57:30,170 INFO : Inserting Ficolin-3
05 Jul 2024 15:57:30,174 INFO : 38% Done
05 Jul 2024 15:57:30,236 INFO : Inserting Follistatin-related protein 1
05 Jul 2024 15:57:30,294 INFO : Inserting Fructose-bisphosphate aldolase B
05 Jul 2024 15:57:30,350 INFO : Inserting Galectin-3
05 Jul 2024 15:57:30,414 INFO : Inserting Galectin-3-binding protein
05 Jul 2024 15:57:30,477 INFO : Inserting Gamma-enolase
05 Jul 2024 15:57:30,481 INFO : 39% Done
05 Jul 2024 15:57:30,541 INFO : Inserting Gelsolin
05 Jul 2024 15:57:30,604 INFO : Inserting Glial fibrillary acidic protein
05 Jul 2024 15:57:30,669 INFO : Inserting Glutamate receptor ionotropic NMDA 2A
05 Jul 2024 15:57:30,673 INFO : 40% Done
05 Jul 2024 15:57:30,728 INFO : Inserting Glutamate receptor ionotropic NMDA 2B
05 Jul 2024 15:57:30,792 INFO : Inserting Glutathione peroxidase 3
05 Jul 2024 15:57:30,857 INFO : Inserting Glutathione S-transferase P
05 Jul 2024 15:57:30,863 INFO : 41% Done
05 Jul 2024 15:57:30,928 INFO : Inserting Haptoglobin
05 Jul 2024 15:57:30,993 INFO : Inserting Heat shock protein beta-1
05 Jul 2024 15:57:30,997 INFO : 42% Done
05 Jul 2024 15:57:31,073 INFO : Inserting Hemoglobin subunit alpha
05 Jul 2024 15:57:31,137 INFO : Inserting Hemopexin
05 Jul 2024 15:57:31,199 INFO : Inserting Heparin cofactor 2
05 Jul 2024 15:57:31,264 INFO : Inserting Hepatocyte growth factor-like protein
05 Jul 2024 15:57:31,321 INFO : Inserting Histidine-rich glycoprotein
05 Jul 2024 15:57:31,386 INFO : Inserting Hornerin
05 Jul 2024 15:57:31,390 INFO : 43% Done
05 Jul 2024 15:57:31,454 INFO : Inserting Hyaluronan-binding protein 2
05 Jul 2024 15:57:31,516 INFO : Inserting Ig gamma-1 chain C region
05 Jul 2024 15:57:31,580 INFO : Inserting Ig mu chain C region
05 Jul 2024 15:57:31,584 INFO : 44% Done
05 Jul 2024 15:57:31,647 INFO : Inserting Ig mu heavy chain disease protein and Ig mu chain C
05 Jul 2024 15:57:31,713 INFO : Inserting IgGFc-binding protein
05 Jul 2024 15:57:31,718 INFO : 45% Done
05 Jul 2024 15:57:31,777 INFO : Inserting Immunoglobulin kappa variable 4-1
05 Jul 2024 15:57:31,843 INFO : Inserting Insulin-like growth factor I
05 Jul 2024 15:57:31,905 INFO : Inserting Insulin-like growth factor-binding protein 1
05 Jul 2024 15:57:31,910 INFO : 46% Done
05 Jul 2024 15:57:31,963 INFO : Inserting Insulin-like growth factor-binding protein 2
05 Jul 2024 15:57:32,018 INFO : Inserting Insulin-like growth factor-binding protein 3
05 Jul 2024 15:57:32,083 INFO : Inserting Insulin-like growth factor-binding protein complex acid labile subunit
05 Jul 2024 15:57:32,215 INFO : Inserting Inter-alpha-trypsin inhibitor heavy chain H1
05 Jul 2024 15:57:32,278 INFO : Inserting Inter-alpha-trypsin inhibitor heavy chain H2
05 Jul 2024 15:57:32,283 INFO : 47% Done
05 Jul 2024 15:57:32,338 INFO : Inserting Inter-alpha-trypsin inhibitor heavy chain H4
05 Jul 2024 15:57:32,391 INFO : Inserting Intercellular adhesion molecule 1
05 Jul 2024 15:57:32,395 INFO : 48% Done
05 Jul 2024 15:57:32,457 INFO : Inserting Interleukin-10
05 Jul 2024 15:57:32,524 INFO : Inserting Interleukin-6
05 Jul 2024 15:57:32,587 INFO : Inserting Interstitial collagenase
05 Jul 2024 15:57:32,591 INFO : 49% Done
05 Jul 2024 15:57:32,647 INFO : Inserting Kallistatin
05 Jul 2024 15:57:32,705 INFO : Inserting Keratin type I cytoskeletal 10
05 Jul 2024 15:57:32,756 INFO : Inserting Keratin type I cytoskeletal 9
05 Jul 2024 15:57:32,760 INFO : 50% Done
05 Jul 2024 15:57:32,815 INFO : Inserting Keratin-type II cytoskeletal 2 epidermal
05 Jul 2024 15:57:32,874 INFO : Inserting Kininogen-1
05 Jul 2024 15:57:32,937 INFO : Inserting Lactotransferrin
05 Jul 2024 15:57:33,000 INFO : Inserting Leucine-rich alpha-2-glycoprotein
05 Jul 2024 15:57:33,064 INFO : Inserting Lipopolysaccharide-binding protein
05 Jul 2024 15:57:33,069 INFO : 51% Done
05 Jul 2024 15:57:33,133 INFO : Inserting L-selectin
05 Jul 2024 15:57:33,198 INFO : Inserting Lumican
05 Jul 2024 15:57:33,262 INFO : Inserting Lysozyme C
05 Jul 2024 15:57:33,267 INFO : 52% Done
05 Jul 2024 15:57:33,328 INFO : Inserting Mannan-binding lectin serine protease 1
05 Jul 2024 15:57:33,392 INFO : Inserting Mannan-binding lectin serine protease 2A
05 Jul 2024 15:57:33,452 INFO : Inserting Mannose-binding protein C
05 Jul 2024 15:57:33,456 INFO : 53% Done
05 Jul 2024 15:57:33,514 INFO : Inserting Matrix Gla protein
05 Jul 2024 15:57:33,580 INFO : Inserting Matrix metalloproteinase-9
05 Jul 2024 15:57:33,646 INFO : Inserting Melanotransferrin
05 Jul 2024 15:57:33,650 INFO : 54% Done
05 Jul 2024 15:57:33,711 INFO : Inserting Metalloproteinase inhibitor 1
05 Jul 2024 15:57:33,762 INFO : Inserting Metalloproteinase inhibitor 2
05 Jul 2024 15:57:33,815 INFO : Inserting Metalloproteinase inhibitor 4
05 Jul 2024 15:57:33,868 INFO : Inserting Microtubule-associated protein tau
05 Jul 2024 15:57:33,918 INFO : Inserting Mucin-16
05 Jul 2024 15:57:33,923 INFO : 55% Done
05 Jul 2024 15:57:33,973 INFO : Inserting Myelin basic protein
05 Jul 2024 15:57:34,022 INFO : Inserting Myeloblastin
05 Jul 2024 15:57:34,071 INFO : Inserting Myeloperoxidase
05 Jul 2024 15:57:34,076 INFO : 56% Done
05 Jul 2024 15:57:34,126 INFO : Inserting N(G),N(G)-dimethylarginine dimethylaminohydrolase 1
05 Jul 2024 15:57:34,179 INFO : Inserting N-acetylmuramoyl-L-alanine amidase
05 Jul 2024 15:57:34,183 INFO : 57% Done
05 Jul 2024 15:57:34,233 INFO : Inserting Natriuretic peptides B
05 Jul 2024 15:57:34,286 INFO : Inserting Neuropilin-2
05 Jul 2024 15:57:34,338 INFO : Inserting Neutrophil gelatinase-associated lipocalin
05 Jul 2024 15:57:34,343 INFO : 58% Done
05 Jul 2024 15:57:34,401 INFO : Inserting Nucleoside diphosphate kinase A, B
05 Jul 2024 15:57:34,463 INFO : Inserting Occludin
05 Jul 2024 15:57:34,522 INFO : Inserting Osteopontin
05 Jul 2024 15:57:34,580 INFO : Inserting Oxidized low-density lipoprotein receptor 1
05 Jul 2024 15:57:34,637 INFO : Inserting Pappalysin-1
05 Jul 2024 15:57:34,694 INFO : Inserting Peroxiredoxin-1
05 Jul 2024 15:57:34,699 INFO : 59% Done
05 Jul 2024 15:57:34,752 INFO : Imported 200 peptide groups.
05 Jul 2024 15:57:34,752 INFO : Inserting Peroxiredoxin-2
05 Jul 2024 15:57:34,809 INFO : Inserting Phosphatidylcholine-sterol acyltransferase
05 Jul 2024 15:57:34,814 INFO : 60% Done
05 Jul 2024 15:57:34,886 INFO : Inserting Phosphatidylinositol-glycan-specific phospholipase D
05 Jul 2024 15:57:34,958 INFO : Inserting Phospholipid transfer protein
05 Jul 2024 15:57:35,034 INFO : Inserting Pigment epithelium-derived factor
05 Jul 2024 15:57:35,039 INFO : 61% Done
05 Jul 2024 15:57:35,100 INFO : Inserting Plasma protease C1 inhibitor
05 Jul 2024 15:57:35,154 INFO : Inserting Plasma serine protease inhibitor
05 Jul 2024 15:57:35,225 INFO : Inserting Plasminogen activator inhibitor 1
05 Jul 2024 15:57:35,232 INFO : 62% Done
05 Jul 2024 15:57:35,294 INFO : Inserting Plasminogen
05 Jul 2024 15:57:35,347 INFO : Inserting Plastin-2
05 Jul 2024 15:57:35,402 INFO : Inserting Platelet endothelial cell adhesion molecule
05 Jul 2024 15:57:35,458 INFO : Inserting Platelet glycoprotein VI
05 Jul 2024 15:57:35,515 INFO : Inserting Platelet-activating factor acetylhydrolase
05 Jul 2024 15:57:35,521 INFO : 63% Done
05 Jul 2024 15:57:35,575 INFO : Inserting Pregnancy zone protein
05 Jul 2024 15:57:35,627 INFO : Inserting Proenkephalin-A
05 Jul 2024 15:57:35,684 INFO : Inserting Prolactin
05 Jul 2024 15:57:35,688 INFO : 64% Done
05 Jul 2024 15:57:35,741 INFO : Inserting Protein AMBP
05 Jul 2024 15:57:35,794 INFO : Inserting Protein S100-A12
05 Jul 2024 15:57:35,847 INFO : Inserting Protein S100-A9
05 Jul 2024 15:57:35,851 INFO : 65% Done
05 Jul 2024 15:57:35,902 INFO : Inserting Protein S100-B
05 Jul 2024 15:57:35,958 INFO : Inserting Protein Z-dependent protease inhibitor
05 Jul 2024 15:57:36,011 INFO : Inserting Protein_deglycase_DJ-1
05 Jul 2024 15:57:36,016 INFO : 66% Done
05 Jul 2024 15:57:36,071 INFO : Inserting Proteoglycan 4
05 Jul 2024 15:57:36,127 INFO : Inserting Prothrombin
05 Jul 2024 15:57:36,192 INFO : Inserting P-selectin
05 Jul 2024 15:57:36,254 INFO : Inserting Ras GTPase-activating protein nGAP
05 Jul 2024 15:57:36,312 INFO : Inserting Resistin
05 Jul 2024 15:57:36,318 INFO : 67% Done
05 Jul 2024 15:57:36,374 INFO : Inserting Retinol-binding protein 4
05 Jul 2024 15:57:36,437 INFO : Inserting Serotransferrin
05 Jul 2024 15:57:36,512 INFO : Inserting Serum albumin
05 Jul 2024 15:57:36,517 INFO : 68% Done
05 Jul 2024 15:57:36,588 INFO : Inserting Serum amyloid A-1 and A-2 proteins
05 Jul 2024 15:57:36,658 INFO : Inserting Serum amyloid A-4 protein
05 Jul 2024 15:57:36,728 INFO : Inserting Serum amyloid P-component
05 Jul 2024 15:57:36,733 INFO : 69% Done
05 Jul 2024 15:57:36,797 INFO : Inserting Serum paraoxonase/arylesterase 1
05 Jul 2024 15:57:36,863 INFO : Inserting Serum paraoxonase/lactonase 3
05 Jul 2024 15:57:36,867 INFO : 70% Done
05 Jul 2024 15:57:36,929 INFO : Inserting Sex hormone-binding globulin
05 Jul 2024 15:57:36,993 INFO : Inserting SPARC
05 Jul 2024 15:57:37,057 INFO : Inserting Spermine oxidase
05 Jul 2024 15:57:37,126 INFO : Inserting Sterile alpha motif domain-containing protein 9-like
05 Jul 2024 15:57:37,191 INFO : Inserting Stromelysin-1
05 Jul 2024 15:57:37,253 INFO : Inserting Target of Nesh-SH3
05 Jul 2024 15:57:37,258 INFO : 71% Done
05 Jul 2024 15:57:37,318 INFO : Inserting TBC1 domain family member 10A
05 Jul 2024 15:57:37,385 INFO : Inserting Tenascin
05 Jul 2024 15:57:37,452 INFO : Inserting Tenascin-X
05 Jul 2024 15:57:37,456 INFO : 72% Done
05 Jul 2024 15:57:37,523 INFO : Inserting Tetranectin
05 Jul 2024 15:57:37,589 INFO : Inserting Thrombomodulin
05 Jul 2024 15:57:37,592 INFO : 73% Done
05 Jul 2024 15:57:37,652 INFO : Inserting Thrombospondin-1
05 Jul 2024 15:57:37,713 INFO : Inserting Thrombospondin-4
05 Jul 2024 15:57:37,774 INFO : Inserting Thyroglobulin
05 Jul 2024 15:57:37,779 INFO : 74% Done
05 Jul 2024 15:57:37,837 INFO : Inserting Thyroxine-binding globulin
05 Jul 2024 15:57:37,899 INFO : Inserting Tissue_factor_pathway_inhibitor
05 Jul 2024 15:57:37,960 INFO : Inserting Tissue-type plasminogen activator
05 Jul 2024 15:57:38,022 INFO : Inserting Transcription factor SOX-1
05 Jul 2024 15:57:38,084 INFO : Inserting Transferrin receptor protein 1
05 Jul 2024 15:57:38,147 INFO : Inserting Transthyretin
05 Jul 2024 15:57:38,152 INFO : 75% Done
05 Jul 2024 15:57:38,211 INFO : Inserting Tumor necrosis factor receptor superfamily member 1A
05 Jul 2024 15:57:38,276 INFO : 76% Done
05 Jul 2024 15:57:38,335 INFO : Inserting Tumor necrosis factor receptor superfamily member 1B
05 Jul 2024 15:57:38,397 INFO : Inserting Vascular cell adhesion protein 1
05 Jul 2024 15:57:38,462 INFO : Inserting Vascular endothelial growth factor B
05 Jul 2024 15:57:38,468 INFO : 77% Done
05 Jul 2024 15:57:38,526 INFO : Inserting Vascular endothelial growth factor D
05 Jul 2024 15:57:38,588 INFO : Inserting Vascular non-inflammatory molecule 3
05 Jul 2024 15:57:38,649 INFO : Inserting Vasorin
05 Jul 2024 15:57:38,653 INFO : 78% Done
05 Jul 2024 15:57:38,708 INFO : Inserting Vitamin D-binding protein
05 Jul 2024 15:57:38,754 INFO : Inserting Vitamin K-dependent protein C
05 Jul 2024 15:57:38,809 INFO : Inserting Vitamin K-dependent protein S
05 Jul 2024 15:57:38,860 INFO : Inserting Vitamin K-dependent protein Z
05 Jul 2024 15:57:38,972 INFO : 79% Done
05 Jul 2024 15:57:39,021 INFO : Inserting Vitronectin
05 Jul 2024 15:57:39,078 INFO : Inserting von Willebrand factor
05 Jul 2024 15:57:39,138 INFO : Inserting Xaa-Pro dipeptidase
05 Jul 2024 15:57:39,142 INFO : 80% Done
05 Jul 2024 15:57:39,194 INFO : Inserting Zinc-alpha-2-glycoprotein
05 Jul 2024 15:57:39,245 INFO : Done parsing Skyline document.
05 Jul 2024 15:57:39,310 INFO : No group comparisons found.
05 Jul 2024 15:57:39,310 INFO : Calculating calibration curves
05 Jul 2024 15:57:39,388 INFO : 81% Done
05 Jul 2024 15:57:39,556 INFO : 82% Done
05 Jul 2024 15:57:39,706 INFO : 83% Done
05 Jul 2024 15:57:39,894 INFO : 84% Done
05 Jul 2024 15:57:40,038 INFO : 85% Done
05 Jul 2024 15:57:40,218 INFO : 86% Done
05 Jul 2024 15:57:40,377 INFO : 87% Done
05 Jul 2024 15:57:40,518 INFO : 88% Done
05 Jul 2024 15:57:40,674 INFO : 89% Done
05 Jul 2024 15:57:40,803 INFO : 90% Done
05 Jul 2024 15:57:40,962 INFO : 91% Done
05 Jul 2024 15:57:41,101 INFO : 92% Done
05 Jul 2024 15:57:41,260 INFO : 93% Done
05 Jul 2024 15:57:41,409 INFO : 94% Done
05 Jul 2024 15:57:41,567 INFO : 95% Done
05 Jul 2024 15:57:41,724 INFO : 96% Done
05 Jul 2024 15:57:41,861 INFO : 97% Done
05 Jul 2024 15:57:42,017 INFO : 98% Done
05 Jul 2024 15:57:43,857 INFO : Done calculating calibration curves.
05 Jul 2024 15:57:43,858 INFO : Creating and populating temp tables for Proportion values
05 Jul 2024 15:57:43,932 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Jul 2024 15:57:47,298 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Jul 2024 15:57:47,669 INFO : Cleaning up temp tables
05 Jul 2024 15:57:48,011 INFO : Completed import of Skyline document from S-0536_H_sap_pano_2024-07-05_11-19-11.sky.zip
05 Jul 2024 15:57:48,013 INFO : 100% Done
05 Jul 2024 15:57:48,021 INFO : Done importing xar
05 Jul 2024 15:57:48,022 INFO : Loading pages and webpart properties
05 Jul 2024 15:57:48,087 INFO : Done importing 3 page(s) with 5 webpart(s)
05 Jul 2024 15:57:48,087 INFO : Loading File Browser config
05 Jul 2024 15:57:48,087 INFO : Done importing File Browser config
05 Jul 2024 15:57:48,088 INFO : Starting Sample Status Data import
05 Jul 2024 15:57:48,088 INFO : No sample types XAR file to process.
05 Jul 2024 15:57:48,088 INFO : Finished importing Sample Status Data
05 Jul 2024 15:57:48,092 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Jul 2024 15:57:48,094 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
05 Jul 2024 15:57:48,095 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
05 Jul 2024 15:57:48,095 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
05 Jul 2024 15:57:48,095 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
05 Jul 2024 15:57:48,095 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Jul 2024 15:57:48,097 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
05 Jul 2024 15:57:48,103 INFO : Moving files to folder /Panorama Public/2024/MRM Proteomics - Seer Proteograph and creating symlinks
05 Jul 2024 15:57:48,212 INFO : Aligning data files urls in folder: /Panorama Public/2024/MRM Proteomics - Seer Proteograph
05 Jul 2024 15:57:48,218 INFO : Importing files metadata.
05 Jul 2024 15:57:48,219 INFO :
05 Jul 2024 15:57:48,219 INFO : Experiment import completed successfully.
05 Jul 2024 15:57:48,219 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
05 Jul 2024 15:57:48,237 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
05 Jul 2024 15:57:48,237 INFO :
05 Jul 2024 15:57:48,237 INFO : Checking for library folders.
05 Jul 2024 15:57:48,238 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
05 Jul 2024 15:57:48,254 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
05 Jul 2024 15:57:48,254 INFO :
05 Jul 2024 15:57:48,254 INFO : Finishing up experiment copy.
05 Jul 2024 15:57:48,256 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/MRM Proteomics - Seer Proteograph
05 Jul 2024 15:57:48,256 INFO : Setting version on new experiment to 1
05 Jul 2024 15:57:48,258 INFO : Updating permanent link to point to the new copy of the data.
05 Jul 2024 15:57:48,281 INFO : Removing copy permissions given to Panorama Public
05 Jul 2024 15:57:48,283 INFO : Adding read permissions to all users that are folder admins in the source folder.
05 Jul 2024 15:57:48,283 INFO : Assigning ReaderRole to cgaither@mrmproteomics.com
05 Jul 2024 15:57:48,283 INFO : Assigning ReaderRole to coralieg@mrmproteomics.com
05 Jul 2024 15:57:48,283 INFO : Assigning PanoramaPublicSubmitterRole to cgaither@mrmproteomics.com
05 Jul 2024 15:57:48,288 INFO : User cgaither@mrmproteomics.com is already a member of group Panorama Public Submitters
05 Jul 2024 15:57:48,288 INFO : Updating the 'Raw Data' tab configuration
05 Jul 2024 15:57:48,289 INFO : Creating a reviewer account.
05 Jul 2024 15:57:48,354 INFO : Created reviewer with email: panorama+reviewer275@proteinms.net
05 Jul 2024 15:57:48,354 INFO : Generating password.
05 Jul 2024 15:57:48,490 INFO : Set reviewer password successfully.
05 Jul 2024 15:57:48,498 INFO : Adding user panorama+reviewer275@proteinms.net to group Reviewers
05 Jul 2024 15:57:48,499 INFO : Hiding the Data Pipeline tab.
05 Jul 2024 15:57:48,504 INFO : Updating Submission. Setting copiedExperimentId to 1864
05 Jul 2024 15:57:50,470 INFO : Assigning a ProteomeXchange ID.
05 Jul 2024 15:57:50,678 INFO : Assigned ProteomeXchange ID: PXD053704
05 Jul 2024 15:57:50,678 INFO : Assigning a DOI.
05 Jul 2024 15:57:51,355 INFO : Assigned DOI: 10.6069/2a58-q964
05 Jul 2024 15:57:51,482 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'