A new release of LabKey Server is now available that fixes the Skyline 3.7 to Panorama upload bug. Please give it a try and let me know if you still have issues.
I have also updated AutoQC to 188.8.131.5234 (http://skyline.gs.washington.edu/software/AutoQC/index.html
). This should handle network mapped drives better, and there should be more verbose output in the program log (AutoQCProgram.log in the directory where AutoQCLoader is installed). Please give it a try and let me know how it goes.
AutoQCLoader will self-upgrade when you restart it. But, before you upgrade please save your configurations. They get stored in a user.config file, usually in one of the subfolders in this location:
C:\Users\<username>\AppData\Local\Apps\2.0\Data\<...>\<...>\auto...tion_<hash>\. You could do a search for user.config files in C:\Users\<username>\AppData\Local\Apps\2.0\Data. You will likely find several. Look for the latest one that has these elements:
Save this file in a separate location. The upgrade process should preserve user.config. But in case something goes wrong, and you lose your configurations, you can import the older user.config by clicking on the new "Import" button in AutoQCLoader.
One thing I have noticed with this upgrade is that on one of my machines I had to re-enter my Panorama password in the "Panorama Settings" tab. Sorry if you have to do that too.