error in autoQC

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error in autoQC wphipps5  2023-12-19 17:16:31
 

Hi there-- AutoQC loads our data fine into Panorama, but there are eventually errors...

[12/19/2023 5:00:37 PM] Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\STMS_20231212_07.raw was acquired (12/15/2023 4:15:57 AM) before the acquisition date (12/15/2023 4:18:45 AM) on the last imported file in the Skyline document. Skipping...
[12/19/2023 5:00:37 PM] STMS_20231212_08.raw is ready
[12/19/2023 5:00:37 PM] Running SkylineRunner.exe with args:
[12/19/2023 5:00:37 PM] --in="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\QEplus_HeLa_PRM.sky" --import-file="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\STMS_20231212_08.raw" --import-on-or-after=12/15/2023 4:18:45 AM --save
[12/19/2023 5:00:38 PM] Opening file...
[12/19/2023 5:00:39 PM] File QEplus_HeLa_PRM.sky opened.
[12/19/2023 5:00:41 PM] Loading QEplus_HeLa_PRM.skyd cache
[12/19/2023 5:00:41 PM] 100%
[12/19/2023 5:00:41 PM] STMS_20231212_08 -> Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\STMS_20231212_08.raw Note: The file has already been imported. Ignoring...
[12/19/2023 5:00:41 PM] Error: No files left to import.
[12/19/2023 5:00:41 PM] TAU_20231215_03.raw is ready
[12/19/2023 5:00:41 PM] Running SkylineRunner.exe with args:
[12/19/2023 5:00:41 PM] --in="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\QEplus_HeLa_PRM.sky" --import-file="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\TAU_20231215_03.raw" --import-on-or-after=12/15/2023 4:18:45 AM --save
[12/19/2023 5:00:42 PM] Opening file...
[12/19/2023 5:00:42 PM] File QEplus_HeLa_PRM.sky opened.
[12/19/2023 5:00:45 PM] Loading QEplus_HeLa_PRM.skyd cache
[12/19/2023 5:00:45 PM] 100%
[12/19/2023 5:00:45 PM]
[12/19/2023 5:00:45 PM] Adding results...
[12/19/2023 5:00:45 PM] 1. Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\TAU_20231215_03.raw
[12/19/2023 5:00:45 PM]
[12/19/2023 5:00:47 PM] Successfully pinged Panorama server.
[12/19/2023 5:00:48 PM] [1] 10%
[12/19/2023 5:00:50 PM] [1] 20%
[12/19/2023 5:00:52 PM] [1] 25%
[12/19/2023 5:00:55 PM] [1] 30%
[12/19/2023 5:00:57 PM] [1] 35%
[12/19/2023 5:00:59 PM] [1] 41%
[12/19/2023 5:01:01 PM] [1] 50%
[12/19/2023 5:01:03 PM] [1] 60%
[12/19/2023 5:01:05 PM] [1] 93%
[12/19/2023 5:01:07 PM]
[12/19/2023 5:01:07 PM] Updating peak statistics
[12/19/2023 5:01:10 PM] 50% - Joining file Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\TAU_20231215_03_2859473399.raw.skyd
[12/19/2023 5:01:11 PM] 100%
[12/19/2023 5:01:12 PM] Updating peak statistics
[12/19/2023 5:01:12 PM] Saving file...
[12/19/2023 5:01:14 PM] QEplus_HeLa_PRM.sky
[12/19/2023 5:01:14 PM] 100%
[12/19/2023 5:01:14 PM] File QEplus_HeLa_PRM.sky saved.
[12/19/2023 5:01:14 PM] SkylineRunner.exe exited successfully.
[12/19/2023 5:01:14 PM] TAU_20231215_17.raw is ready
[12/19/2023 5:01:14 PM] Running SkylineRunner.exe with args:
[12/19/2023 5:01:14 PM] --in="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\QEplus_HeLa_PRM.sky" --import-file="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\TAU_20231215_17.raw" --import-on-or-after=12/15/2023 4:18:45 AM --save
[12/19/2023 5:01:15 PM] Opening file...
[12/19/2023 5:01:16 PM] File QEplus_HeLa_PRM.sky opened.
[12/19/2023 5:01:18 PM] Loading QEplus_HeLa_PRM.skyd cache
[12/19/2023 5:01:18 PM] 100%
[12/19/2023 5:01:18 PM]
[12/19/2023 5:01:18 PM] Adding results...
[12/19/2023 5:01:18 PM] 1. Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\raw\PRM_raw\TAU_20231215_17.raw
[12/19/2023 5:01:18 PM]
[12/19/2023 5:01:21 PM] [1] 10%
[12/19/2023 5:01:23 PM] [1] 19%
[12/19/2023 5:01:25 PM] [1] 24%
[12/19/2023 5:01:28 PM] [1] 29%
[12/19/2023 5:01:30 PM] [1] 35%
[12/19/2023 5:01:32 PM] [1] 41%
[12/19/2023 5:01:35 PM] [1] 48%
[12/19/2023 5:01:37 PM] [1] 58%
[12/19/2023 5:01:39 PM] [1] 68%
[12/19/2023 5:01:41 PM]
[12/19/2023 5:01:42 PM] Updating peak statistics
[12/19/2023 5:01:44 PM] 50% - Joining file Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\TAU_20231215_17_2859473399.raw.skyd
[12/19/2023 5:01:45 PM] 100%
[12/19/2023 5:01:46 PM] Updating peak statistics
[12/19/2023 5:01:46 PM] Saving file...
[12/19/2023 5:01:48 PM] File QEplus_HeLa_PRM.sky saved.
[12/19/2023 5:01:48 PM] SkylineRunner.exe exited successfully.
[12/19/2023 5:01:48 PM] Running SkylineRunner.exe with args:
[12/19/2023 5:01:48 PM] --in="Y:\Chemistry\MassSpecFacility\STMS-AMC\7-STMS_Tuning\AutoQC\QEplus_HeLa_PRM.sky" --panorama-server="https://panoramaweb.org/" --panorama-folder="/Hoofnagle/HeLa PRM QC" --panorama-username="WPHIPPS5@UW.EDU"
[12/19/2023 5:01:49 PM] ERROR: Unable to verify Panorama server information.
[12/19/2023 5:01:49 PM] There was an error authenticating user credentials on the server https://panoramaweb.org/.
[12/19/2023 5:01:49 PM]
[12/19/2023 5:01:49 PM] ERROR: Unexpected JSON response from the server: {{"currentUser":{{"canUpdateOwn":"false","canUpdate":"false","canDeleteOwn":"false","canInsert":"false","displayName":"wphipps5","canDelete":"false","id":5750,"isAdmin":"false","email":"wphipps5@uw.edu"}}
[12/19/2023 5:01:49 PM] URL: https://panoramaweb.org/security/home/ensureLogin.view
[12/19/2023 5:01:49 PM]
[12/19/2023 5:01:49 PM] Exiting...
[12/19/2023 5:01:49 PM] ERROR: SkylineRunner.exe exited with error code 2.
[12/19/2023 5:01:49 PM] Finished importing existing files...
[12/19/2023 5:01:49 PM] Importing new files...
[12/19/2023 5:01:49 PM] ERROR: Uploads to Panorama have not been successful in over 24 hours. Stopping configuration.
[12/19/2023 5:01:49 PM] Finished running configuration.

 
 
Vagisha Sharma responded:  2023-12-20 01:24:19

Can you please try changing your email address in the AutoQC Loader configuration from WPHIPPS5@UW.EDU to wphipps5@uw.edu (all lower case)? I suspect AutoQC Loader is looking for the all uppercase email address in the response from the server. But the email address in the response is lowercase.

Thanks,
-Vagisha

 
wphipps5 responded:  2023-12-20 06:26:36

I believe that worked. Thank you.