Delete folders?: /home/support

Delete folders?

support

View Message

Delete folders?

Alejandro Cohen

2019-01-08 11:00:27

Hi Panorama people,

I'm trying to set new folders for AutoQC of all instruments in my lab, but I cant seem to delete older folders. I get the following error when I try to delete the folders from the Folder Management page:
java.lang.NullPointerException
at org.labkey.pipeline.api.PipelineManager.purge(PipelineManager.java:240)
at org.labkey.pipeline.PipelineModule.containerDeleted(PipelineModule.java:237)
at org.labkey.api.data.ContainerManager.fireDeleteContainer(ContainerManager.java:2108)
at org.labkey.api.data.ContainerManager.delete(ContainerManager.java:1573)
at org.labkey.core.admin.AdminController$DeleteFolderAction.handlePost(AdminController.java:6823)
at org.labkey.core.admin.AdminController$DeleteFolderAction.handlePost(AdminController.java:6784)
at org.labkey.api.action.FormViewAction.handleRequest(FormViewAction.java:101)
at org.labkey.api.action.FormViewAction.handleRequest(FormViewAction.java:80)
at org.labkey.api.action.BaseViewAction.handleRequest(BaseViewAction.java:177)
at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:482)
at org.labkey.api.module.DefaultModule.dispatch(DefaultModule.java:1266)
at org.labkey.api.view.ViewServlet._service(ViewServlet.java:204)
at org.labkey.api.view.ViewServlet.service(ViewServlet.java:131)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:38)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:1241)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:215)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:118)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:493)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:650)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:800)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:806)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1498)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:748)
request attributes
LABKEY.OriginalURL = http://localhost:8080/admin/Dalhousie University - Proteo and Metabolomics Core/QC_VelosPro/QTra5500_QC/deleteFolder.view?
LABKEY.StartTime = 1546973895452
LABKEY.action = deleteFolder
org.springframework.web.servlet.DispatcherServlet.CONTEXT = Root WebApplicationContext: startup date [Thu Dec 20 13:54:46 PST 2018]; parent: Root WebApplicationContext
LABKEY.controller = admin
LABKEY.Counter = 0
org.labkey.api.util.ExceptionUtil$exception = java.lang.NullPointerException
X-LABKEY-CSRF = f03e4fa741ccf58c794ea79555e0ac35
LABKEY.container = /Dalhousie University - Proteo and Metabolomics Core/QC_VelosPro/QTra5500_QC
LABKEY.RequestURL = /admin/Dalhousie%20University%20-%20Proteo%20and%20Metabolomics%20Core/QC_VelosPro/QTra5500_QC/deleteFolder.view?
LABKEY.OriginalURLHelper = /admin/Dalhousie%20University%20-%20Proteo%20and%20Metabolomics%20Core/QC_VelosPro/QTra5500_QC/deleteFolder.view?

core schema database configuration
Server URL jdbc:postgresql://localhost/labkey
Product Name PostgreSQL
Product Version 10.3
Driver Name PostgreSQL JDBC Driver
Driver Version 42.2.5

Vagisha Sharma responded:	2019-01-08 13:11:19
Hi Alejandro, Thank you for posting the full error message. I assume that you are trying this in your project on PanoramaWeb (although the URL in the error starts with http://localhost:8080...). I see errors in the server log that match the error you posted. I was able to successfully delete the folder referred to in the error message: "Dalhousie University - Proteo and Metabolomics Core/QC_VelosPro/QTra5500_QC". "QC_VelosPro" had been renamed to "Quality Control" earlier today so the actual path was "Dalhousie University - Proteo and Metabolomics Core/Quality Control/QTra5500_QC". I don't have a good idea for why you got the error. It could be due to the couple of folder rename events that I see in the log. If you have any more folders to delete can you please try to delete them and report back if you get this error again? Thanks, Vagisha

vagisha responded:	2019-01-08 17:10:09
Hi Alejandro, This is due to a bug that prevents users from deleting folders. I was able to delete it because I am a site administrator. I will update the server with a fix in the next couple of days and let you know when I am done. Sorry for the inconvenience. -Vagisha

Alejandro Cohen responded:	2019-01-09 05:52:43
Thanks Vagisha for the quick response. I'm actually reorganizing the folders because I am adding a new instrument to our QC. After reading the tutorials and webinars, you suggested keeping all instruments as separate folders, is this correct? That's why I only want to keep the folder labeled as Quality Control and its two subfolders. Could you remove the rest until the bug is fixed? (Please delete TEST and Qtrap5500_Metabolomics under our main Dalhousie University Folder). Thanks!!! Alex

Vagisha Sharma responded:	2019-01-09 09:23:30
Hi Alejandro, In our lab we keep a sub-folder per instrument under a 'QC' folder, similar to the setup you have now. This makes it easy to get a overall view of all the instruments from the dashboard in the parent 'QC' folder. I deleted TEST and Qtrap5500_Metabolomics folders. Thanks, Vagisha

Alejandro Cohen responded:	2019-01-18 11:45:28
Hi Vagisha, I successfully uploaded the previous files via Skyline, but I'm now trying to upload the current files I'm acquiring using AutoQC Uloader. It fails at the very end, this is the log (Below). Any ideas? [1/9/2019 2:12:28 PM] Logging initialized... Name: U3000-VelosPro_BSA_QC Enabled: True Panorama User: alejandro.cohen@dal.ca Created: 1/9/20191:47 PM Modified: 1/9/20192:12 PM Main Settings Skyline file: C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky Folder to watch: Z:\VELOS\BSA_QC_100fmol Include subfolders: False Filter Type: All Instrument: Thermo Results window: 365 days Acquisition time: 75 minutes Panorama Settings Panorama server URL: https://panoramaweb.org/ Panorama user email: alejandro.cohen@dal.ca Panorama folder: /Dalhousie University - Proteo and Metabolomics Core/Quality Control/U3000-VelosPro_Proteomics [1/9/2019 2:12:30 PM] [1/9/2019 2:12:30 PM] [1/9/2019 2:12:30 PM] [1/9/2019 2:12:32 PM] [1/9/2019 2:12:32 PM] [1/9/2019 2:12:32 PM] [1/9/2019 2:12:32 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:33 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] [1/9/2019 2:12:34 PM] --in="C:\Users\User\D --panorama-server=" Enabled: True Panorama User: Created: 1/9/20191:47 PM Modified: 1/9/20192:12 PM Getting the acquisition date on the newest file imported into the Skyline document. Running SkylineDailyRunner.exe with args: --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\User\AppData\Local\Apps\2.0\9YOA8M8E.0H1\6GMJRL3B.QE6\auto..tion_e4141a2a22107248_0001.0001_3bb6506ad6bc5fff\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\User\Documents\Skyline Files\AcquisitionTimes.csv" The name 'AcquisitionTimes' already exists. Resolving conflicts by overwriting. Success! Imported Reports from FileAcquisitionTime Opening file... File VelosPro_BSA_100fmol_QC.sky opened. Exporting report AcquisitionTimes... Report AcquisitionTimes exported successfully to C:\Users\User\Documents\Skyline Files\AcquisitionTimes.csv. SkylineDailyRunner.exe exited successfully. The most recent acquisition date in the Skyline document is 1/9/2019 5:48:01 AM Initializing Panorama pinger... Starting configuration... Importing existing files... Existing files found: 43 181211_BSA_Std_100fmol_V001_R01.raw was acquired (12/11/2018 6:54:16 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R02.raw was acquired (12/11/2018 8:06:38 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R03.raw was acquired (12/11/2018 9:19:00 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R04.raw was acquired (12/11/2018 10:31:24 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R05.raw was acquired (12/11/2018 11:43:46 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R06.raw was acquired (12/12/2018 12:56:06 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R07.raw was acquired (12/12/2018 2:08:30 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R08.raw was acquired (12/12/2018 3:20:50 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R09.raw was acquired (12/12/2018 4:33:10 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181211_BSA_Std_100fmol_V001_R10.raw was acquired (12/12/2018 5:45:34 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_01.raw was acquired (12/12/2018 11:47:24 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_BSA_Std_100fmol_V002_4C_R01.raw was acquired (12/12/2018 12:59:53 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_BSA_Std_100fmol_V002_4C_R02.raw was acquired (12/12/2018 2:12:14 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_BSA_Std_100fmol_V002_4C_R03.raw was acquired (12/12/2018 3:24:37 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_02.raw was acquired (12/12/2018 4:36:56 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_03.raw was acquired (12/12/2018 5:49:19 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_04.raw was acquired (12/12/2018 7:01:41 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_BSA_Std_100fmol_V003_-20C_R01.raw was acquired (12/12/2018 8:14:03 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_BSA_Std_100fmol_V003_-20C_R02.raw was acquired (12/12/2018 9:26:27 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_BSA_Std_100fmol_V003_-20C_R03.raw was acquired (12/12/2018 10:38:51 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_05.raw was acquired (12/12/2018 11:51:13 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_06.raw was acquired (12/13/2018 1:03:35 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 181212_Blk_07.raw was acquired (12/13/2018 2:15:55 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190103_BSA_QC100_V001_R01_190104190114.raw was acquired (1/4/2019 8:13:33 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190103_BSA_QC100_V001_R02_190104201334.raw was acquired (1/4/2019 9:25:55 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190103_BSA_QC100_V001_R03_190104212556.raw was acquired (1/4/2019 10:38:17 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190103_BSA_QC100_V001_R04.raw was acquired (1/4/2019 11:50:37 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190103_BSA_QC100_V001_R05.raw was acquired (1/5/2019 1:02:55 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190107_BSA_QC100_V001_R01.raw was acquired (1/7/2019 7:42:56 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190107_BSA_QC100_V001_R02.raw was acquired (1/7/2019 8:55:16 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190107_BSA_QC100_V001_R03.raw was acquired (1/7/2019 10:07:36 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190107_BSA_QC100_V001_R04.raw was acquired (1/7/2019 11:19:52 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190107_BSA_QC100_V001_R05.raw was acquired (1/8/2019 12:32:15 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R01.raw was acquired (1/8/2019 8:09:09 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R02.raw was acquired (1/8/2019 9:21:32 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R03.raw was acquired (1/8/2019 10:33:52 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R04.raw was acquired (1/8/2019 11:46:10 PM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R05.raw was acquired (1/9/2019 12:58:38 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R06.raw was acquired (1/9/2019 2:10:58 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R07.raw was acquired (1/9/2019 3:23:18 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R08.raw was acquired (1/9/2019 4:35:38 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R09.raw was acquired (1/9/2019 5:48:00 AM) before the acquisition date (1/9/2019 5:48:01 AM) on the last imported file in the Skyline document. Skipping... 190108_BSA_QC100_V002_R10.raw is ready Running SkylineDailyRunner.exe with args: ocuments\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --import-file="Z:\VELOS\BSA_QC_100fmol\190108_BSA_QC100_V002_R10.raw" --import-on-or-after=1/9/2019 5:48:01 AM --save href="https://panoramaweb.org/">https://panoramaweb.org/" --panorama-folder="/Dalhousie University - Proteo and Metabolomics Core/Quality Control/U3000-VelosPro_Proteomics" --panorama-username="alejandro.cohen@dal.ca" Opening file... File VelosPro_BSA_100fmol_QC.sky opened. Warning: The replicate 190108_BSA_QC100_V002_R10 already exists in the given document and the --import-append option is not specified. The replicate will not be added to the document. Saving file... File VelosPro_BSA_100fmol_QC.sky saved. No new results added. Skipping Panorama import. SkylineDailyRunner.exe exited successfully. Finished importing existing files... Importing new files... Waiting for files... Successfully pinged Panorama server. Logging initialized... alejandro.cohen@dal.ca Main Settings Skyline file: C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky Folder to watch: Z:\VELOS\BSA_QC_100fmol Include subfolders: False Filter Type: All Instrument: Thermo Results window: 365 days Acquisition time: 75 minutes Panorama Settings Panorama server URL: https://panoramaweb.org/ Panorama user email: alejandro.cohen@dal.ca Panorama folder: /Dalhousie University - Proteo and Metabolomics Core/Quality Control/U3000-VelosPro_Proteomics [1/18/2019 2:24:28 PM] Getting the acquisition date on the newest file imported into the Skyline document. [1/18/2019 2:24:28 PM] Running SkylineDailyRunner.exe with args: [1/18/2019 2:24:28 PM] --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\User\AppData\Local\Apps\2.0\9YOA8M8E.0H1\6GMJRL3B.QE6\auto..tion_e4141a2a22107248_0001.0001_3bb6506ad6bc5fff\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\User\Documents\Skyline Files\AcquisitionTimes.csv" [1/18/2019 2:24:30 PM] The name 'AcquisitionTimes' already exists. [1/18/2019 2:24:30 PM] Resolving conflicts by overwriting. [1/18/2019 2:24:30 PM] Success! Imported Reports from FileAcquisitionTime [1/18/2019 2:24:30 PM] Opening file... [1/18/2019 2:24:31 PM] File VelosPro_BSA_100fmol_QC.sky opened. [1/18/2019 2:24:31 PM] Exporting report AcquisitionTimes... [1/18/2019 2:24:31 PM] Report AcquisitionTimes exported successfully to C:\Users\User\Documents\Skyline Files\AcquisitionTimes.csv. [1/18/2019 2:24:31 PM] SkylineDailyRunner.exe exited successfully. [1/18/2019 2:24:31 PM] The most recent acquisition date in the Skyline document is 1/10/2019 9:39:51 PM [1/18/2019 2:24:31 PM] Initializing Panorama pinger... [1/18/2019 2:24:31 PM] Starting configuration... [1/18/2019 2:24:31 PM] Importing existing files... [1/18/2019 2:24:31 PM] Existing files found: 50 [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R01.raw was acquired (12/11/2018 6:54:16 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R02.raw was acquired (12/11/2018 8:06:38 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R03.raw was acquired (12/11/2018 9:19:00 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R04.raw was acquired (12/11/2018 10:31:24 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R05.raw was acquired (12/11/2018 11:43:46 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R06.raw was acquired (12/12/2018 12:56:06 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R07.raw was acquired (12/12/2018 2:08:30 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R08.raw was acquired (12/12/2018 3:20:50 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R09.raw was acquired (12/12/2018 4:33:10 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181211_BSA_Std_100fmol_V001_R10.raw was acquired (12/12/2018 5:45:34 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_01.raw was acquired (12/12/2018 11:47:24 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_BSA_Std_100fmol_V002_4C_R01.raw was acquired (12/12/2018 12:59:53 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_BSA_Std_100fmol_V002_4C_R02.raw was acquired (12/12/2018 2:12:14 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_BSA_Std_100fmol_V002_4C_R03.raw was acquired (12/12/2018 3:24:37 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_02.raw was acquired (12/12/2018 4:36:56 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_03.raw was acquired (12/12/2018 5:49:19 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_04.raw was acquired (12/12/2018 7:01:41 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_BSA_Std_100fmol_V003_-20C_R01.raw was acquired (12/12/2018 8:14:03 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_BSA_Std_100fmol_V003_-20C_R02.raw was acquired (12/12/2018 9:26:27 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_BSA_Std_100fmol_V003_-20C_R03.raw was acquired (12/12/2018 10:38:51 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_05.raw was acquired (12/12/2018 11:51:13 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_06.raw was acquired (12/13/2018 1:03:35 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 181212_Blk_07.raw was acquired (12/13/2018 2:15:55 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190103_BSA_QC100_V001_R01_190104190114.raw was acquired (1/4/2019 8:13:33 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190103_BSA_QC100_V001_R02_190104201334.raw was acquired (1/4/2019 9:25:55 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190103_BSA_QC100_V001_R03_190104212556.raw was acquired (1/4/2019 10:38:17 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190103_BSA_QC100_V001_R04.raw was acquired (1/4/2019 11:50:37 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190103_BSA_QC100_V001_R05.raw was acquired (1/5/2019 1:02:55 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190107_BSA_QC100_V001_R01.raw was acquired (1/7/2019 7:42:56 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190107_BSA_QC100_V001_R02.raw was acquired (1/7/2019 8:55:16 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190107_BSA_QC100_V001_R03.raw was acquired (1/7/2019 10:07:36 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190107_BSA_QC100_V001_R04.raw was acquired (1/7/2019 11:19:52 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190107_BSA_QC100_V001_R05.raw was acquired (1/8/2019 12:32:15 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R01.raw was acquired (1/8/2019 8:09:09 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R02.raw was acquired (1/8/2019 9:21:32 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R03.raw was acquired (1/8/2019 10:33:52 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R04.raw was acquired (1/8/2019 11:46:10 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R05.raw was acquired (1/9/2019 12:58:38 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R06.raw was acquired (1/9/2019 2:10:58 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R07.raw was acquired (1/9/2019 3:23:18 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R08.raw was acquired (1/9/2019 4:35:38 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R09.raw was acquired (1/9/2019 5:48:00 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190108_BSA_QC100_V002_R10.raw was acquired (1/9/2019 7:00:22 AM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190110_BSA_QC100_V002_R01.raw was acquired (1/10/2019 8:27:30 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190110_BSA_QC100_V002_R02.raw was acquired (1/10/2019 9:39:49 PM) before the acquisition date (1/10/2019 9:39:51 PM) on the last imported file in the Skyline document. Skipping... [1/18/2019 2:24:32 PM] 190110_BSA_QC100_V002_R03.raw is ready [1/18/2019 2:24:32 PM] Running SkylineDailyRunner.exe with args: [1/18/2019 2:24:32 PM] --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --import-file="Z:\VELOS\BSA_QC_100fmol\190110_BSA_QC100_V002_R03.raw" --import-on-or-after=1/10/2019 9:39:51 PM --save [1/18/2019 2:24:33 PM] Opening file... [1/18/2019 2:24:34 PM] File VelosPro_BSA_100fmol_QC.sky opened. [1/18/2019 2:24:34 PM] Warning: The replicate 190110_BSA_QC100_V002_R03 already exists in the given document and the --import-append option is not specified. The replicate will not be added to the document. [1/18/2019 2:24:34 PM] Saving file... [1/18/2019 2:24:34 PM] File VelosPro_BSA_100fmol_QC.sky saved. [1/18/2019 2:24:34 PM] SkylineDailyRunner.exe exited successfully. [1/18/2019 2:24:34 PM] 190110_BSA_QC100_V002_R04.raw is ready [1/18/2019 2:24:34 PM] Running SkylineDailyRunner.exe with args: [1/18/2019 2:24:34 PM] --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --import-file="Z:\VELOS\BSA_QC_100fmol\190110_BSA_QC100_V002_R04.raw" --import-on-or-after=1/10/2019 9:39:51 PM --save [1/18/2019 2:24:36 PM] Opening file... [1/18/2019 2:24:37 PM] File VelosPro_BSA_100fmol_QC.sky opened. [1/18/2019 2:24:37 PM] [1/18/2019 2:24:37 PM] Adding results... [1/18/2019 2:24:38 PM] 1. Z:\VELOS\BSA_QC_100fmol\190110_BSA_QC100_V002_R04.raw [1/18/2019 2:24:38 PM] [1/18/2019 2:24:41 PM] [1] 44% [1/18/2019 2:24:42 PM] Successfully pinged Panorama server. [1/18/2019 2:24:43 PM] [1] 56% [1/18/2019 2:24:45 PM] [1] 70% [1/18/2019 2:24:46 PM] [1/18/2019 2:24:46 PM] Updating peak statistics [1/18/2019 2:24:46 PM] Joining file C:\Users\User\Documents\Skyline Files\190110_BSA_QC100_V002_R04_1421346621.raw.skyd [1/18/2019 2:24:46 PM] Saving file... [1/18/2019 2:24:46 PM] File VelosPro_BSA_100fmol_QC.sky saved. [1/18/2019 2:24:46 PM] SkylineDailyRunner.exe exited successfully. [1/18/2019 2:24:46 PM] 190110_BSA_QC100_V002_R05.raw is ready [1/18/2019 2:24:46 PM] Running SkylineDailyRunner.exe with args: [1/18/2019 2:24:46 PM] --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --import-file="Z:\VELOS\BSA_QC_100fmol\190110_BSA_QC100_V002_R05.raw" --import-on-or-after=1/10/2019 9:39:51 PM --save [1/18/2019 2:24:48 PM] Opening file... [1/18/2019 2:24:49 PM] File VelosPro_BSA_100fmol_QC.sky opened. [1/18/2019 2:24:49 PM] [1/18/2019 2:24:49 PM] Adding results... [1/18/2019 2:24:49 PM] 1. Z:\VELOS\BSA_QC_100fmol\190110_BSA_QC100_V002_R05.raw [1/18/2019 2:24:49 PM] [1/18/2019 2:24:53 PM] [1] 44% [1/18/2019 2:24:55 PM] [1] 55% [1/18/2019 2:24:57 PM] [1] 68% [1/18/2019 2:24:58 PM] [1/18/2019 2:24:58 PM] Updating peak statistics [1/18/2019 2:24:58 PM] Joining file C:\Users\User\Documents\Skyline Files\190110_BSA_QC100_V002_R05_1421346621.raw.skyd [1/18/2019 2:24:58 PM] Saving file... [1/18/2019 2:24:58 PM] File VelosPro_BSA_100fmol_QC.sky saved. [1/18/2019 2:24:58 PM] SkylineDailyRunner.exe exited successfully. [1/18/2019 2:24:58 PM] 190118_BSA_QC100_V003_R01.raw is ready [1/18/2019 2:24:58 PM] Running SkylineDailyRunner.exe with args: [1/18/2019 2:24:58 PM] --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --import-file="Z:\VELOS\BSA_QC_100fmol\190118_BSA_QC100_V003_R01.raw" --import-on-or-after=1/10/2019 9:39:51 PM --save [1/18/2019 2:25:00 PM] Opening file... [1/18/2019 2:25:01 PM] File VelosPro_BSA_100fmol_QC.sky opened. [1/18/2019 2:25:01 PM] [1/18/2019 2:25:01 PM] Adding results... [1/18/2019 2:25:01 PM] 1. Z:\VELOS\BSA_QC_100fmol\190118_BSA_QC100_V003_R01.raw [1/18/2019 2:25:01 PM] [1/18/2019 2:25:05 PM] [1] 36% [1/18/2019 2:25:07 PM] [1] 48% [1/18/2019 2:25:10 PM] [1] 53% [1/18/2019 2:25:13 PM] [1] 56% [1/18/2019 2:25:15 PM] [1] 66% [1/18/2019 2:25:16 PM] [1/18/2019 2:25:17 PM] Updating peak statistics [1/18/2019 2:25:17 PM] Joining file C:\Users\User\Documents\Skyline Files\190118_BSA_QC100_V003_R01_1421346621.raw.skyd [1/18/2019 2:25:17 PM] Saving file... [1/18/2019 2:25:17 PM] File VelosPro_BSA_100fmol_QC.sky saved. [1/18/2019 2:25:17 PM] SkylineDailyRunner.exe exited successfully. [1/18/2019 2:25:17 PM] 190118_BSA_QC100_V003_R02.raw is ready [1/18/2019 2:25:17 PM] Running SkylineDailyRunner.exe with args: [1/18/2019 2:25:17 PM] --in="C:\Users\User\Documents\Skyline Files\VelosPro_BSA_100fmol_QC.sky" --import-file="Z:\VELOS\BSA_QC_100fmol\190118_BSA_QC100_V003_R02.raw" --import-on-or-after=1/10/2019 9:39:51 PM --save --panorama-server="https://panoramaweb.org/" --panorama-folder="/Dalhousie University - Proteo and Metabolomics Core/Quality Control/U3000-VelosPro_Proteomics" --panorama-username="alejandro.cohen@dal.ca" [1/18/2019 2:25:21 PM] Opening file... [1/18/2019 2:25:22 PM] File VelosPro_BSA_100fmol_QC.sky opened. [1/18/2019 2:25:22 PM] [1/18/2019 2:25:22 PM] Adding results... [1/18/2019 2:25:23 PM] 1. Z:\VELOS\BSA_QC_100fmol\190118_BSA_QC100_V003_R02.raw [1/18/2019 2:25:23 PM] [1/18/2019 2:25:26 PM] [1] 35% [1/18/2019 2:25:28 PM] [1] 48% [1/18/2019 2:25:30 PM] [1] 53% [1/18/2019 2:25:32 PM] [1] 57% [1/18/2019 2:25:35 PM] [1] 68% [1/18/2019 2:25:36 PM] [1/18/2019 2:25:36 PM] Updating peak statistics [1/18/2019 2:25:36 PM] Joining file C:\Users\User\Documents\Skyline Files\190118_BSA_QC100_V003_R02_1421346621.raw.skyd [1/18/2019 2:25:36 PM] Saving file... [1/18/2019 2:25:36 PM] File VelosPro_BSA_100fmol_QC.sky saved. [1/18/2019 2:25:40 PM] Uploaded 160.00 KB of 66.05 MB [1/18/2019 2:25:42 PM] Uploaded 544.00 KB of 66.05 MB [1/18/2019 2:25:44 PM] Uploaded 928.00 KB of 66.05 MB [1/18/2019 2:25:46 PM] Uploaded 1.28 MB of 66.05 MB [1/18/2019 2:25:48 PM] 1% - Uploaded 1.66 MB of 66.05 MB [1/18/2019 2:25:50 PM] Uploaded 2.03 MB of 66.05 MB [1/18/2019 2:25:52 PM] Uploaded 2.41 MB of 66.05 MB [1/18/2019 2:25:54 PM] 2% - Uploaded 2.78 MB of 66.05 MB [1/18/2019 2:25:56 PM] Uploaded 3.16 MB of 66.05 MB [1/18/2019 2:25:58 PM] Uploaded 3.53 MB of 66.05 MB [1/18/2019 2:26:00 PM] Uploaded 3.91 MB of 66.05 MB [1/18/2019 2:26:02 PM] 3% - Uploaded 4.28 MB of 66.05 MB [1/18/2019 2:26:04 PM] Uploaded 4.66 MB of 66.05 MB [1/18/2019 2:26:06 PM] Uploaded 5.03 MB of 66.05 MB [1/18/2019 2:26:08 PM] 4% - Uploaded 5.41 MB of 66.05 MB [1/18/2019 2:26:10 PM] Uploaded 5.78 MB of 66.05 MB [1/18/2019 2:26:12 PM] Uploaded 6.16 MB of 66.05 MB [1/18/2019 2:26:14 PM] Uploaded 6.53 MB of 66.05 MB [1/18/2019 2:26:16 PM] 5% - Uploaded 6.91 MB of 66.05 MB [1/18/2019 2:26:18 PM] Uploaded 7.28 MB of 66.05 MB [1/18/2019 2:26:20 PM] Uploaded 7.66 MB of 66.05 MB [1/18/2019 2:26:22 PM] 6% - Uploaded 8.03 MB of 66.05 MB [1/18/2019 2:26:24 PM] Uploaded 8.41 MB of 66.05 MB [1/18/2019 2:26:26 PM] Uploaded 8.78 MB of 66.05 MB [1/18/2019 2:26:28 PM] Uploaded 9.16 MB of 66.05 MB [1/18/2019 2:26:30 PM] 7% - Uploaded 9.53 MB of 66.05 MB [1/18/2019 2:26:32 PM] Uploaded 9.91 MB of 66.05 MB [1/18/2019 2:26:34 PM] Uploaded 10.28 MB of 66.05 MB [1/18/2019 2:26:36 PM] 8% - Uploaded 10.66 MB of 66.05 MB [1/18/2019 2:26:38 PM] Uploaded 11.03 MB of 66.05 MB [1/18/2019 2:26:40 PM] Uploaded 11.41 MB of 66.05 MB [1/18/2019 2:26:42 PM] Uploaded 11.78 MB of 66.05 MB [1/18/2019 2:26:44 PM] 9% - Uploaded 12.16 MB of 66.05 MB [1/18/2019 2:26:46 PM] Uploaded 12.53 MB of 66.05 MB [1/18/2019 2:26:48 PM] Uploaded 12.91 MB of 66.05 MB [1/18/2019 2:26:50 PM] 10% - Uploaded 13.28 MB of 66.05 MB [1/18/2019 2:26:52 PM] Uploaded 13.66 MB of 66.05 MB [1/18/2019 2:26:54 PM] Uploaded 14.03 MB of 66.05 MB [1/18/2019 2:26:56 PM] Uploaded 14.41 MB of 66.05 MB [1/18/2019 2:26:58 PM] 11% - Uploaded 14.78 MB of 66.05 MB [1/18/2019 2:27:00 PM] Uploaded 15.16 MB of 66.05 MB [1/18/2019 2:27:02 PM] Uploaded 15.53 MB of 66.05 MB [1/18/2019 2:27:04 PM] 12% - Uploaded 15.91 MB of 66.05 MB [1/18/2019 2:27:06 PM] Uploaded 16.28 MB of 66.05 MB [1/18/2019 2:27:08 PM] Uploaded 16.66 MB of 66.05 MB [1/18/2019 2:27:10 PM] Uploaded 17.03 MB of 66.05 MB [1/18/2019 2:27:13 PM] 13% - Uploaded 17.41 MB of 66.05 MB [1/18/2019 2:27:15 PM] Uploaded 17.78 MB of 66.05 MB [1/18/2019 2:27:17 PM] Uploaded 18.16 MB of 66.05 MB [1/18/2019 2:27:19 PM] 14% - Uploaded 18.53 MB of 66.05 MB [1/18/2019 2:27:21 PM] Uploaded 18.91 MB of 66.05 MB [1/18/2019 2:27:23 PM] Uploaded 19.28 MB of 66.05 MB [1/18/2019 2:27:25 PM] Uploaded 19.66 MB of 66.05 MB [1/18/2019 2:27:27 PM] 15% - Uploaded 20.03 MB of 66.05 MB [1/18/2019 2:27:29 PM] Uploaded 20.41 MB of 66.05 MB [1/18/2019 2:27:31 PM] Uploaded 20.78 MB of 66.05 MB [1/18/2019 2:27:33 PM] 16% - Uploaded 21.16 MB of 66.05 MB [1/18/2019 2:27:35 PM] Uploaded 21.53 MB of 66.05 MB [1/18/2019 2:27:37 PM] Uploaded 21.91 MB of 66.05 MB [1/18/2019 2:27:39 PM] Uploaded 22.28 MB of 66.05 MB [1/18/2019 2:27:41 PM] 17% - Uploaded 22.66 MB of 66.05 MB [1/18/2019 2:27:43 PM] Uploaded 23.03 MB of 66.05 MB [1/18/2019 2:27:45 PM] Uploaded 23.41 MB of 66.05 MB [1/18/2019 2:27:47 PM] 18% - Uploaded 23.78 MB of 66.05 MB [1/18/2019 2:27:49 PM] Uploaded 24.16 MB of 66.05 MB [1/18/2019 2:27:51 PM] Uploaded 24.53 MB of 66.05 MB [1/18/2019 2:27:53 PM] Uploaded 24.91 MB of 66.05 MB [1/18/2019 2:27:55 PM] 19% - Uploaded 25.28 MB of 66.05 MB [1/18/2019 2:27:57 PM] Uploaded 25.66 MB of 66.05 MB [1/18/2019 2:27:59 PM] Uploaded 26.03 MB of 66.05 MB [1/18/2019 2:28:01 PM] Uploaded 26.41 MB of 66.05 MB [1/18/2019 2:28:03 PM] 20% - Uploaded 26.78 MB of 66.05 MB [1/18/2019 2:28:05 PM] Uploaded 27.16 MB of 66.05 MB [1/18/2019 2:28:07 PM] Uploaded 27.53 MB of 66.05 MB [1/18/2019 2:28:09 PM] 21% - Uploaded 27.91 MB of 66.05 MB [1/18/2019 2:28:11 PM] Uploaded 28.28 MB of 66.05 MB [1/18/2019 2:28:13 PM] Uploaded 28.65 MB of 66.05 MB [1/18/2019 2:28:15 PM] Uploaded 29.02 MB of 66.05 MB [1/18/2019 2:28:17 PM] 22% - Uploaded 29.40 MB of 66.05 MB [1/18/2019 2:28:19 PM] Uploaded 29.77 MB of 66.05 MB [1/18/2019 2:28:21 PM] Uploaded 30.15 MB of 66.05 MB [1/18/2019 2:28:23 PM] 23% - Uploaded 30.52 MB of 66.05 MB [1/18/2019 2:28:25 PM] Uploaded 30.90 MB of 66.05 MB [1/18/2019 2:28:27 PM] Uploaded 31.27 MB of 66.05 MB [1/18/2019 2:28:29 PM] Uploaded 31.65 MB of 66.05 MB [1/18/2019 2:28:31 PM] 24% - Uploaded 32.02 MB of 66.05 MB [1/18/2019 2:28:33 PM] Uploaded 32.40 MB of 66.05 MB [1/18/2019 2:28:35 PM] Uploaded 32.77 MB of 66.05 MB [1/18/2019 2:28:37 PM] 25% - Uploaded 33.15 MB of 66.05 MB [1/18/2019 2:28:39 PM] Uploaded 33.52 MB of 66.05 MB [1/18/2019 2:28:41 PM] Uploaded 33.90 MB of 66.05 MB [1/18/2019 2:28:43 PM] Uploaded 34.27 MB of 66.05 MB [1/18/2019 2:28:45 PM] 26% - Uploaded 34.65 MB of 66.05 MB [1/18/2019 2:28:47 PM] Uploaded 35.02 MB of 66.05 MB [1/18/2019 2:28:49 PM] Uploaded 35.40 MB of 66.05 MB [1/18/2019 2:28:51 PM] 27% - Uploaded 35.77 MB of 66.05 MB [1/18/2019 2:28:53 PM] Uploaded 36.15 MB of 66.05 MB [1/18/2019 2:28:55 PM] Uploaded 36.52 MB of 66.05 MB [1/18/2019 2:28:57 PM] Uploaded 36.90 MB of 66.05 MB [1/18/2019 2:28:59 PM] 28% - Uploaded 37.27 MB of 66.05 MB [1/18/2019 2:29:01 PM] Uploaded 37.65 MB of 66.05 MB [1/18/2019 2:29:03 PM] Uploaded 38.02 MB of 66.05 MB [1/18/2019 2:29:05 PM] 29% - Uploaded 38.40 MB of 66.05 MB [1/18/2019 2:29:07 PM] Uploaded 38.77 MB of 66.05 MB [1/18/2019 2:29:09 PM] Uploaded 39.15 MB of 66.05 MB [1/18/2019 2:29:11 PM] Uploaded 39.52 MB of 66.05 MB [1/18/2019 2:29:13 PM] 30% - Uploaded 39.90 MB of 66.05 MB [1/18/2019 2:29:15 PM] Uploaded 40.27 MB of 66.05 MB [1/18/2019 2:29:17 PM] Uploaded 40.65 MB of 66.05 MB [1/18/2019 2:29:19 PM] 31% - Uploaded 41.02 MB of 66.05 MB [1/18/2019 2:29:21 PM] Uploaded 41.40 MB of 66.05 MB [1/18/2019 2:29:23 PM] Uploaded 41.77 MB of 66.05 MB [1/18/2019 2:29:25 PM] Uploaded 42.15 MB of 66.05 MB [1/18/2019 2:29:27 PM] 32% - Uploaded 42.52 MB of 66.05 MB [1/18/2019 2:29:29 PM] Uploaded 42.90 MB of 66.05 MB [1/18/2019 2:29:31 PM] Uploaded 43.27 MB of 66.05 MB [1/18/2019 2:29:33 PM] 33% - Uploaded 43.65 MB of 66.05 MB [1/18/2019 2:29:35 PM] Uploaded 44.02 MB of 66.05 MB [1/18/2019 2:29:37 PM] Uploaded 44.40 MB of 66.05 MB [1/18/2019 2:29:39 PM] Uploaded 44.77 MB of 66.05 MB [1/18/2019 2:29:41 PM] 34% - Uploaded 45.15 MB of 66.05 MB [1/18/2019 2:29:43 PM] Uploaded 45.52 MB of 66.05 MB [1/18/2019 2:29:45 PM] Uploaded 45.90 MB of 66.05 MB [1/18/2019 2:29:47 PM] 35% - Uploaded 46.27 MB of 66.05 MB [1/18/2019 2:29:49 PM] Uploaded 46.65 MB of 66.05 MB [1/18/2019 2:29:51 PM] Uploaded 47.02 MB of 66.05 MB [1/18/2019 2:29:53 PM] Uploaded 47.40 MB of 66.05 MB [1/18/2019 2:29:55 PM] 36% - Uploaded 47.77 MB of 66.05 MB [1/18/2019 2:29:57 PM] Uploaded 48.15 MB of 66.05 MB [1/18/2019 2:29:59 PM] Uploaded 48.52 MB of 66.05 MB [1/18/2019 2:30:01 PM] 37% - Uploaded 48.90 MB of 66.05 MB [1/18/2019 2:30:03 PM] Uploaded 49.27 MB of 66.05 MB [1/18/2019 2:30:05 PM] Uploaded 49.65 MB of 66.05 MB [1/18/2019 2:30:07 PM] Uploaded 50.02 MB of 66.05 MB [1/18/2019 2:30:09 PM] 38% - Uploaded 50.40 MB of 66.05 MB [1/18/2019 2:30:11 PM] Uploaded 50.77 MB of 66.05 MB [1/18/2019 2:30:14 PM] Uploaded 51.15 MB of 66.05 MB [1/18/2019 2:30:16 PM] 39% - Uploaded 51.52 MB of 66.05 MB [1/18/2019 2:30:18 PM] Uploaded 51.90 MB of 66.05 MB [1/18/2019 2:30:20 PM] Uploaded 52.27 MB of 66.05 MB [1/18/2019 2:30:22 PM] Uploaded 52.65 MB of 66.05 MB [1/18/2019 2:30:24 PM] 40% - Uploaded 53.02 MB of 66.05 MB [1/18/2019 2:30:26 PM] Uploaded 53.40 MB of 66.05 MB [1/18/2019 2:30:28 PM] Uploaded 53.77 MB of 66.05 MB [1/18/2019 2:30:30 PM] Uploaded 54.15 MB of 66.05 MB [1/18/2019 2:30:32 PM] 41% - Uploaded 54.52 MB of 66.05 MB [1/18/2019 2:30:34 PM] Uploaded 54.90 MB of 66.05 MB [1/18/2019 2:30:36 PM] Uploaded 55.27 MB of 66.05 MB [1/18/2019 2:30:38 PM] 42% - Uploaded 55.65 MB of 66.05 MB [1/18/2019 2:30:40 PM] Uploaded 56.02 MB of 66.05 MB [1/18/2019 2:30:42 PM] Uploaded 56.40 MB of 66.05 MB [1/18/2019 2:30:44 PM] Uploaded 56.77 MB of 66.05 MB [1/18/2019 2:30:46 PM] 43% - Uploaded 57.15 MB of 66.05 MB [1/18/2019 2:30:48 PM] Uploaded 57.52 MB of 66.05 MB [1/18/2019 2:30:50 PM] Uploaded 57.90 MB of 66.05 MB [1/18/2019 2:30:52 PM] 44% - Uploaded 58.27 MB of 66.05 MB [1/18/2019 2:30:54 PM] Uploaded 58.65 MB of 66.05 MB [1/18/2019 2:30:56 PM] Uploaded 59.02 MB of 66.05 MB [1/18/2019 2:30:58 PM] Uploaded 59.40 MB of 66.05 MB [1/18/2019 2:31:00 PM] 45% - Uploaded 59.77 MB of 66.05 MB [1/18/2019 2:31:02 PM] Uploaded 60.15 MB of 66.05 MB [1/18/2019 2:31:04 PM] Uploaded 60.52 MB of 66.05 MB [1/18/2019 2:31:06 PM] 46% - Uploaded 60.90 MB of 66.05 MB [1/18/2019 2:31:08 PM] Uploaded 61.27 MB of 66.05 MB [1/18/2019 2:31:10 PM] Uploaded 61.65 MB of 66.05 MB [1/18/2019 2:31:12 PM] Uploaded 62.02 MB of 66.05 MB [1/18/2019 2:31:14 PM] 47% - Uploaded 62.40 MB of 66.05 MB [1/18/2019 2:31:16 PM] Uploaded 62.77 MB of 66.05 MB [1/18/2019 2:31:18 PM] Uploaded 63.15 MB of 66.05 MB [1/18/2019 2:31:20 PM] 48% - Uploaded 63.52 MB of 66.05 MB [1/18/2019 2:31:22 PM] Uploaded 63.90 MB of 66.05 MB [1/18/2019 2:31:24 PM] Uploaded 64.27 MB of 66.05 MB [1/18/2019 2:31:26 PM] Uploaded 64.65 MB of 66.05 MB [1/18/2019 2:31:28 PM] 49% - Uploaded 65.02 MB of 66.05 MB [1/18/2019 2:31:30 PM] Uploaded 65.40 MB of 66.05 MB [1/18/2019 2:31:32 PM] Uploaded 65.77 MB of 66.05 MB [1/18/2019 2:31:33 PM] 100% - Uploaded 66.05 MB of 66.05 MB [1/18/2019 2:31:34 PM] Renaming temporary file on server [1/18/2019 3:14:07 PM] Unknown error attempting to upload to Panorama. [1/18/2019 3:14:07 PM] The remote server returned an error: (502) Bad Gateway. [1/18/2019 3:14:07 PM] SkylineDailyRunner.exe exited successfully. [1/18/2019 3:14:07 PM] Finished importing existing files... [1/18/2019 3:14:07 PM] Importing new files... [1/18/2019 3:14:07 PM] Waiting for files... [1/18/2019 3:16:11 PM] Error pinging Panorama server https://panoramaweb.org/ System.Net.WebException: The remote server returned an error: (502) Bad Gateway. at System.Net.WebClient.DownloadDataInternal(Uri address, WebRequest& request) at System.Net.WebClient.DownloadString(Uri address) at AutoQC.WebClientWithCredentials.Post(Uri uri, NameValueCollection postData) at AutoQC.WebPanoramaClient.PingPanorama(String folderPath, String username, String password) at AutoQC.PanoramaPinger.PingPanoramaServer() [1/18/2019 3:19:42 PM] Successfully pinged Panorama server.

Vagisha Sharma responded:	2019-01-18 13:35:27
Hi Alejandro, I had to restart the PanoramaWeb server around the time there is an error in the log you pasted. That is most likely the cause. Your document did get added to the import queue, however, and got imported successfully on PanoramaWeb. Let me know if you see this problem again. Thanks, Vagisha

Alejandro Cohen responded:	2019-01-21 11:27:50
Vagisha, I just checked my Panorama results for this QC, and finally the two files I uploaded via AutoQC Uploader were added to my QC plots, however, there appear to be four points for each peptide precursor for just two files I uploaded. The file names are: 190118_BSA_QC100_V003_R01 and R02. Interestingly, the same files appear to have different calculated areas! When I got to the .raw files, I only seem the two files I uploaded. Any suggestions?? Alex

Vagisha Sharma responded:	2019-01-21 17:09:34
Hi Alejandro, I am looking at this folder: https://panoramaweb.org/project/Dalhousie University - Proteo and Metabolomics Core/Quality Control/U3000-VelosPro_Proteomics/begin.view?. Hopefully, it is the correct one. You are seeing two points per raw file because most of the peptides in your document have two precursors each (+2 and +3). It appears that we are showing one chart per peptide, not one per precursor. The QC summary panel says there are 10 precursors when there are 17. This is a bug - we should have separate plots for each precursor. Thanks for pointing this out! There are no chromatograms for the +3 precursors from the older raw files. So these precursors must have been added to the Skyline document just before importing the two raw files you mention. Could it have been by accident? I don't see any real signal in most of the +3 chromatograms I looked at. Thanks, Vagisha

Alejandro Cohen responded:	2019-01-22 06:58:04
Thank you Vagisha, You are right, I am still curating the Skyline file, removing some precursors with weak signals, unstable or not reproducible precursors (like a few 3+). However, as you mention, the charts should discriminate the different charges for each plot. I'll follow-up. Cheers Alex

PanoramaWeb

PanoramaWeb

Delete folders?

View Message