AutoQC and *.wiff files

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AutoQC and *.wiff files bonnie baker  2018-06-28
 

I'm just getting started using AutoQC to load QC data into skyline. I successfully created a configuration but it appears that AutoQC is only loading the first scan into my skyline file. Is there anyway to get it to load more than one scan from a *.wiff file? Better yet, can I add just the scans from the *.wiff file that contain a particular text string in their name?

 
 
vsharma responded:  2018-06-28
Hi Bonnie,

Which version of AutoQC and Skyline are you using? With AutoQC Loader (daily) and current Skyline-daily (4.1.1.18151) you should be able to import all the samples from a multi-sample WIFF file. This feature is not available in the public release of Skyline 4.1.0.18169. Sorry about that.

We don't yet have the ability to filter samples in a WIFF file based on a pattern or regular expression. But this is definitely something we would like to add. Thanks for the suggestion!

-Vagisha
 
bonnie baker responded:  2018-06-28
Thanks for the quick reply. I'm using the latest public release. I'll switch to daily and give it another try.