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AutoQC Loader Alejandro Cohen  2018-05-03
 
Hi Skyline/Panorama people!

I'm staring my on QC using AutoQC on Panorama, Skyline and AutoQCLoader. I'm following the tutorial, but when I run my Configuration on Loader I get the following message. I guess the Sklyline file generated on Daily is to 'new' for this version of Loader?? Could you tell me if I'm doing something wrong or an update is available??? Below the Log on AutoQC Loader.

Thanks!!!

Alex
 

[03/05/2018 3:50:24 PM] Logging initialized...
Name: VelosPro_BSA_QC
Enabled: True
Panorama User:
Created: 03/05/20183:50 PM
Modified: 03/05/20183:50 PM

Main Settings
Skyline file: C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
Folder to watch: Z:\VELOS\BSA_Std_250ng
Include subfolders: False
Filter Type: All
Instrument: Thermo
Results window: 360 days
Acquisition time: 90 minutes

Panorama Settings
Not publishing to a Panorama server.

[03/05/2018 3:50:24 PM] Getting the acquisition date on the newest file imported into the Skyline document.
[03/05/2018 3:50:24 PM] Running SkylineRunner.exe with args:
[03/05/2018 3:50:24 PM] --in="C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\Dal U\AppData\Local\Apps\2.0\7CE8A91Z.HPK\79DBY68V.WJ3\auto..tion_e4141a2a22107248_0001.0001_57bf953e1a79aace\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv"
[03/05/2018 3:50:31 PM] Success! Imported Reports from FileAcquisitionTime
[03/05/2018 3:50:31 PM] Opening file...
[03/05/2018 3:50:31 PM] ERROR: Error: There was an error opening the file C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
[03/05/2018 3:50:31 PM] The document format version 4.11 is newer than the version 3.7 supported by Skyline (64-bit) 3.7.0.11317.
[03/05/2018 3:50:31 PM] Exiting...
[03/05/2018 3:50:31 PM] SkylineRunner.exe exited successfully.
[03/05/2018 3:50:31 PM] ERROR: Could not find report outout C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv
[03/05/2018 3:50:31 PM] ERROR: Error importing file.
[03/05/2018 3:52:15 PM] Logging initialized...
Name: VelosPro_BSA_QC
Enabled: True
Panorama User:
Created: 03/05/20183:50 PM
Modified: 03/05/20183:50 PM

Main Settings
Skyline file: C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
Folder to watch: Z:\VELOS\BSA_Std_250ng
Include subfolders: False
Filter Type: All
Instrument: Thermo
Results window: 360 days
Acquisition time: 90 minutes

Panorama Settings
Not publishing to a Panorama server.

[03/05/2018 3:52:15 PM] Getting the acquisition date on the newest file imported into the Skyline document.
[03/05/2018 3:52:15 PM] Running SkylineRunner.exe with args:
[03/05/2018 3:52:15 PM] --in="C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\Dal U\AppData\Local\Apps\2.0\7CE8A91Z.HPK\79DBY68V.WJ3\auto..tion_e4141a2a22107248_0001.0001_57bf953e1a79aace\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv"
[03/05/2018 3:52:17 PM] The name 'AcquisitionTimes' already exists.
[03/05/2018 3:52:17 PM] Resolving conflicts by overwriting.
[03/05/2018 3:52:17 PM] Success! Imported Reports from FileAcquisitionTime
[03/05/2018 3:52:17 PM] Opening file...
[03/05/2018 3:52:17 PM] ERROR: Error: There was an error opening the file C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
[03/05/2018 3:52:17 PM] The document format version 4.11 is newer than the version 3.7 supported by Skyline (64-bit) 3.7.0.11317.
[03/05/2018 3:52:17 PM] Exiting...
[03/05/2018 3:52:17 PM] SkylineRunner.exe exited successfully.
[03/05/2018 3:52:17 PM] ERROR: Could not find report outout C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv
[03/05/2018 3:52:17 PM] ERROR: Error importing file.
[03/05/2018 3:52:21 PM] Logging initialized...
Name: VelosPro_BSA_QC
Enabled: True
Panorama User:
Created: 03/05/20183:50 PM
Modified: 03/05/20183:50 PM

Main Settings
Skyline file: C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
Folder to watch: Z:\VELOS\BSA_Std_250ng
Include subfolders: False
Filter Type: All
Instrument: Thermo
Results window: 360 days
Acquisition time: 90 minutes

Panorama Settings
Not publishing to a Panorama server.

[03/05/2018 3:52:21 PM] Getting the acquisition date on the newest file imported into the Skyline document.
[03/05/2018 3:52:21 PM] Running SkylineRunner.exe with args:
[03/05/2018 3:52:21 PM] --in="C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\Dal U\AppData\Local\Apps\2.0\7CE8A91Z.HPK\79DBY68V.WJ3\auto..tion_e4141a2a22107248_0001.0001_57bf953e1a79aace\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv"
[03/05/2018 3:52:23 PM] The name 'AcquisitionTimes' already exists.
[03/05/2018 3:52:23 PM] Resolving conflicts by overwriting.
[03/05/2018 3:52:23 PM] Success! Imported Reports from FileAcquisitionTime
[03/05/2018 3:52:23 PM] Opening file...
[03/05/2018 3:52:23 PM] ERROR: Error: There was an error opening the file C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
[03/05/2018 3:52:23 PM] The document format version 4.11 is newer than the version 3.7 supported by Skyline (64-bit) 3.7.0.11317.
[03/05/2018 3:52:23 PM] Exiting...
[03/05/2018 3:52:23 PM] SkylineRunner.exe exited successfully.
[03/05/2018 3:52:23 PM] ERROR: Could not find report outout C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv
[03/05/2018 3:52:23 PM] ERROR: Error importing file.
[03/05/2018 3:57:08 PM] Logging initialized...
Name: VelosPro_BSA_QC
Enabled: True
Panorama User: alejandro.cohen@dal.ca
Created: 03/05/20183:50 PM
Modified: 03/05/20183:56 PM

Main Settings
Skyline file: C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
Folder to watch: Z:\VELOS\BSA_Std_250ng
Include subfolders: False
Filter Type: All
Instrument: Thermo
Results window: 360 days
Acquisition time: 90 minutes

Panorama Settings
Panorama server URL: https://panoramaweb.org/
Panorama user email: alejandro.cohen@dal.ca
Panorama folder: /Dalhousie University - Proteo and Metabolomics Core/VelosPRO_QC


[03/05/2018 3:57:10 PM] Getting the acquisition date on the newest file imported into the Skyline document.
[03/05/2018 3:57:10 PM] Running SkylineRunner.exe with args:
[03/05/2018 3:57:10 PM] --in="C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\Dal U\AppData\Local\Apps\2.0\7CE8A91Z.HPK\79DBY68V.WJ3\auto..tion_e4141a2a22107248_0001.0001_57bf953e1a79aace\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv"
[03/05/2018 3:57:12 PM] The name 'AcquisitionTimes' already exists.
[03/05/2018 3:57:12 PM] Resolving conflicts by overwriting.
[03/05/2018 3:57:12 PM] Success! Imported Reports from FileAcquisitionTime
[03/05/2018 3:57:12 PM] Opening file...
[03/05/2018 3:57:12 PM] ERROR: Error: There was an error opening the file C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
[03/05/2018 3:57:12 PM] The document format version 4.11 is newer than the version 3.7 supported by Skyline (64-bit) 3.7.0.11317.
[03/05/2018 3:57:12 PM] Exiting...
[03/05/2018 3:57:12 PM] SkylineRunner.exe exited successfully.
[03/05/2018 3:57:12 PM] ERROR: Could not find report outout C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv
[03/05/2018 3:57:12 PM] ERROR: Error importing file.
[03/05/2018 3:58:09 PM] Logging initialized...
Name: VelosPro_BSA_QC
Enabled: True
Panorama User: alejandro.cohen@dal.ca
Created: 03/05/20183:50 PM
Modified: 03/05/20183:56 PM

Main Settings
Skyline file: C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
Folder to watch: Z:\VELOS\BSA_Std_250ng
Include subfolders: False
Filter Type: All
Instrument: Thermo
Results window: 360 days
Acquisition time: 90 minutes

Panorama Settings
Panorama server URL: https://panoramaweb.org/
Panorama user email: alejandro.cohen@dal.ca
Panorama folder: /Dalhousie University - Proteo and Metabolomics Core/VelosPRO_QC


[03/05/2018 3:58:11 PM] Getting the acquisition date on the newest file imported into the Skyline document.
[03/05/2018 3:58:11 PM] Running SkylineRunner.exe with args:
[03/05/2018 3:58:11 PM] --in="C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\Dal U\AppData\Local\Apps\2.0\7CE8A91Z.HPK\79DBY68V.WJ3\auto..tion_e4141a2a22107248_0001.0001_57bf953e1a79aace\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv"
[03/05/2018 3:58:12 PM] The name 'AcquisitionTimes' already exists.
[03/05/2018 3:58:12 PM] Resolving conflicts by overwriting.
[03/05/2018 3:58:12 PM] Success! Imported Reports from FileAcquisitionTime
[03/05/2018 3:58:12 PM] Opening file...
[03/05/2018 3:58:12 PM] ERROR: Error: There was an error opening the file C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
[03/05/2018 3:58:12 PM] The document format version 4.11 is newer than the version 3.7 supported by Skyline (64-bit) 3.7.0.11317.
[03/05/2018 3:58:12 PM] Exiting...
[03/05/2018 3:58:12 PM] SkylineRunner.exe exited successfully.
[03/05/2018 3:58:12 PM] ERROR: Could not find report outout C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv
[03/05/2018 3:58:12 PM] ERROR: Error importing file.
[03/05/2018 4:03:31 PM] Logging initialized...
Name: VelosPro_BSA_QC
Enabled: True
Panorama User: alejandro.cohen@dal.ca
Created: 03/05/20183:50 PM
Modified: 03/05/20183:56 PM

Main Settings
Skyline file: C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
Folder to watch: Z:\VELOS\BSA_Std_250ng
Include subfolders: False
Filter Type: All
Instrument: Thermo
Results window: 360 days
Acquisition time: 90 minutes

Panorama Settings
Panorama server URL: https://panoramaweb.org/
Panorama user email: alejandro.cohen@dal.ca
Panorama folder: /Dalhousie University - Proteo and Metabolomics Core/VelosPRO_QC


[03/05/2018 4:03:33 PM] Getting the acquisition date on the newest file imported into the Skyline document.
[03/05/2018 4:03:33 PM] Running SkylineRunner.exe with args:
[03/05/2018 4:03:33 PM] --in="C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\Dal U\AppData\Local\Apps\2.0\7CE8A91Z.HPK\79DBY68V.WJ3\auto..tion_e4141a2a22107248_0001.0001_57bf953e1a79aace\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv"
[03/05/2018 4:03:35 PM] The name 'AcquisitionTimes' already exists.
[03/05/2018 4:03:35 PM] Resolving conflicts by overwriting.
[03/05/2018 4:03:35 PM] Success! Imported Reports from FileAcquisitionTime
[03/05/2018 4:03:35 PM] Opening file...
[03/05/2018 4:03:35 PM] ERROR: Error: There was an error opening the file C:\Users\Dal U\Documents\Skyline Libraries\VelosPro_BSA_QC.sky
[03/05/2018 4:03:35 PM] The document format version 4.11 is newer than the version 3.7 supported by Skyline (64-bit) 3.7.0.11317.
[03/05/2018 4:03:35 PM] Exiting...
[03/05/2018 4:03:35 PM] SkylineRunner.exe exited successfully.
[03/05/2018 4:03:35 PM] ERROR: Could not find report outout C:\Users\Dal U\Documents\Skyline Libraries\AcquisitionTimes.csv
[03/05/2018 4:03:35 PM] ERROR: Error importing file.
 
 
vsharma responded:  2018-05-03
Hi Alex,

You need to install AutoQCLoader-daily on your computer if you are using Skyline-daily to process your data.

http://skyline.gs.washington.edu/software/AutoQC/daily/index.html

Thanks,
Vagisha
 
Alejandro Cohen responded:  2018-05-03
Lightning fast reply :-)
Thanks Vagisha!