03 Feb 2022 19:12:57,958 INFO : Copying experiment "Regional variability, genotypic effects, and pharmacodynamic impact on prion protein concentration in the central nervous system" from folder /Carr/CSF_Brain_Prion_TSQ_directMRM to /Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM
03 Feb 2022 19:12:57,958 INFO : =======================================
03 Feb 2022 19:12:58,071 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
03 Feb 2022 19:12:58,071 INFO :
03 Feb 2022 19:12:58,071 INFO : Exporting experiment.
03 Feb 2022 19:23:22,370 INFO : Exporting files metadata.
03 Feb 2022 19:23:22,371 DEBUG: [/Carr/CSF_Brain_Prion_TSQ_directMRM] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export
03 Feb 2022 19:23:22,495 DEBUG: [/Carr/CSF_Brain_Prion_TSQ_directMRM/chromatogram library] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/chromatogram library
03 Feb 2022 19:23:22,501 DEBUG: [/Carr/CSF_Brain_Prion_TSQ_directMRM/preclinical study] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical study
03 Feb 2022 19:23:22,619 INFO :
03 Feb 2022 19:23:22,619 INFO : Experiment export completed successfully.
03 Feb 2022 19:23:22,620 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
03 Feb 2022 19:23:37,616 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
03 Feb 2022 19:23:37,616 INFO :
03 Feb 2022 19:23:37,616 INFO : Importing experiment.
03 Feb 2022 19:23:37,618 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export
03 Feb 2022 19:23:37,620 INFO : Loading folder properties (folder type, settings and active modules)
03 Feb 2022 19:23:37,620 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM] Folder type: Targeted MS
03 Feb 2022 19:23:37,621 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM] Active modules: Pipeline, Internal, TargetedMS, Experiment, Issues, Query, Search, PanoramaPublic, Announcements, Core, FileContent, Wiki, Assay, API, MS2
03 Feb 2022 19:23:37,790 INFO : Done importing folder properties (folder type, settings and active modules)
03 Feb 2022 19:23:37,793 INFO : Loading etl definitions
03 Feb 2022 19:23:37,795 INFO : Loading wikis
03 Feb 2022 19:23:37,810 INFO : 0 wikis imported
03 Feb 2022 19:23:37,810 INFO : Done importing wikis
03 Feb 2022 19:23:37,810 INFO : Starting to copy files
03 Feb 2022 19:24:23,560 INFO : Copied 167 files
03 Feb 2022 19:24:23,560 INFO : Ensuring exp.data rows exist for imported files
03 Feb 2022 19:24:24,538 INFO : Starting Sample Type and Data Class import
03 Feb 2022 19:24:24,539 INFO : No types XAR file to process.
03 Feb 2022 19:24:24,539 INFO : Finished importing Sample Types and Data Classes
03 Feb 2022 19:24:24,542 INFO : Loading xar
03 Feb 2022 19:24:24,548 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9850:Regional+variability%2C+genotypic+effects%2C+and+pharmacodynamic+impact+on+prion+protein+concentration+in+the+central+nervous+system'
03 Feb 2022 19:24:24,548 DEBUG: Experiment/Run group import complete
03 Feb 2022 19:24:24,549 INFO : Done importing xar
03 Feb 2022 19:24:24,552 INFO : Loading pages and webpart properties
03 Feb 2022 19:24:24,649 INFO : Done importing 4 page(s) with 8 webpart(s)
03 Feb 2022 19:24:24,653 INFO : Loading subfolders and container tabs
03 Feb 2022 19:24:24,732 INFO : New container created with inherited permissions for chromatogram library
03 Feb 2022 19:24:24,732 INFO : Loading folder archive for chromatogram library
03 Feb 2022 19:24:24,732 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/chromatogram library
03 Feb 2022 19:24:24,735 INFO : Loading folder properties (folder type, settings and active modules)
03 Feb 2022 19:24:24,735 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library] Folder type: Targeted MS
03 Feb 2022 19:24:24,735 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library] Active modules: Pipeline, Internal, TargetedMS, Experiment, Issues, Query, Search, PanoramaPublic, Announcements, Core, FileContent, Wiki, Assay, API, MS2
03 Feb 2022 19:24:24,833 INFO : Done importing folder properties (folder type, settings and active modules)
03 Feb 2022 19:24:24,836 INFO : Loading etl definitions
03 Feb 2022 19:24:24,839 INFO : Loading wikis
03 Feb 2022 19:24:24,840 INFO : 0 wikis imported
03 Feb 2022 19:24:24,840 INFO : Done importing wikis
03 Feb 2022 19:24:24,841 INFO : Starting to copy files
03 Feb 2022 19:24:58,105 INFO : Copied 45 files
03 Feb 2022 19:24:58,105 INFO : Ensuring exp.data rows exist for imported files
03 Feb 2022 19:24:58,357 INFO : Starting Sample Type and Data Class import
03 Feb 2022 19:24:58,357 INFO : No types XAR file to process.
03 Feb 2022 19:24:58,357 INFO : Finished importing Sample Types and Data Classes
03 Feb 2022 19:24:58,359 INFO : Loading xar
03 Feb 2022 19:24:58,368 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9851:TargetedMS.ImportSkyZip'
03 Feb 2022 19:24:58,370 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9851:TargetedMS.ImportSkyZip.Core'
03 Feb 2022 19:24:58,373 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9851:TargetedMS.ImportSkyZip.Output'
03 Feb 2022 19:24:58,373 DEBUG: Protocol import complete
03 Feb 2022 19:24:58,383 DEBUG: Protocol action set import complete
03 Feb 2022 19:24:58,383 INFO : Done importing xar
03 Feb 2022 19:24:58,385 INFO : Loading pages and webpart properties
03 Feb 2022 19:24:58,492 INFO : Done importing 5 page(s) with 10 webpart(s)
03 Feb 2022 19:24:58,492 INFO : Done importing folder archive for chromatogram library
03 Feb 2022 19:24:58,552 INFO : New container created with inherited permissions for preclinical study
03 Feb 2022 19:24:58,552 INFO : Loading folder archive for preclinical study
03 Feb 2022 19:24:58,553 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/preclinical study] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical study
03 Feb 2022 19:24:58,555 INFO : Loading folder properties (folder type, settings and active modules)
03 Feb 2022 19:24:58,555 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/preclinical study] Folder type: Targeted MS
03 Feb 2022 19:24:58,556 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/preclinical study] Active modules: Pipeline, Internal, TargetedMS, Experiment, Issues, Query, Search, PanoramaPublic, Announcements, Core, FileContent, Wiki, Assay, API, MS2
03 Feb 2022 19:24:58,643 INFO : Done importing folder properties (folder type, settings and active modules)
03 Feb 2022 19:24:58,645 INFO : Loading etl definitions
03 Feb 2022 19:24:58,648 INFO : Loading wikis
03 Feb 2022 19:24:58,650 INFO : 0 wikis imported
03 Feb 2022 19:24:58,650 INFO : Done importing wikis
03 Feb 2022 19:24:58,650 INFO : Starting to copy files
03 Feb 2022 19:26:21,819 INFO : Copied 197 files
03 Feb 2022 19:26:21,819 INFO : Ensuring exp.data rows exist for imported files
03 Feb 2022 19:26:22,652 INFO : Starting Sample Type and Data Class import
03 Feb 2022 19:26:22,653 INFO : No types XAR file to process.
03 Feb 2022 19:26:22,653 INFO : Finished importing Sample Types and Data Classes
03 Feb 2022 19:26:22,654 INFO : Loading xar
03 Feb 2022 19:26:23,883 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9852:TargetedMS.ImportSkyZip'
03 Feb 2022 19:26:23,886 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9852:TargetedMS.ImportSkyZip.Core'
03 Feb 2022 19:26:23,889 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9852:TargetedMS.ImportSkyZip.Output'
03 Feb 2022 19:26:23,889 DEBUG: Protocol import complete
03 Feb 2022 19:26:23,898 DEBUG: Protocol action set import complete
03 Feb 2022 19:26:23,910 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9852:TargetedMS.ImportSkyZip'
03 Feb 2022 19:26:23,919 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9852:721d4bb6-6608-103a-93e1-fea6ddf5fdda'
03 Feb 2022 19:26:23,924 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9852:721d4b92-6608-103a-93e1-fea6ddf5fdda'
03 Feb 2022 19:26:23,924 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9852:TargetedMS.ImportSkyZip.Core'
03 Feb 2022 19:26:23,928 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9852:TargetedMS.ImportSkyZip.Output'
03 Feb 2022 19:26:23,929 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9852:721d4c29-6608-103a-93e1-fea6ddf5fdda'
03 Feb 2022 19:26:23,931 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical%20study/xar/experiments_and_runs.xar.exploded/Run127084/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15/Mortberg_PrP_MRM_20220202.skyd into the system
03 Feb 2022 19:26:23,932 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical%20study/xar/experiments_and_runs.xar.exploded/Run127084/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15/Mortberg_PrP_MRM_20220202.skyd into the system
03 Feb 2022 19:26:23,933 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical%20study/xar/experiments_and_runs.xar.exploded/Run127084/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip into the system
03 Feb 2022 19:26:23,934 INFO : Starting import from Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip
03 Feb 2022 19:26:23,939 INFO : Starting to import Skyline document from Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip
03 Feb 2022 19:26:23,963 INFO : Expanding PrP_mouhum.blib
03 Feb 2022 19:26:23,970 INFO : Expanding Mortberg_PrP_MRM_20220202.skyd
03 Feb 2022 19:26:24,583 INFO : Expanding Mortberg_PrP_MRM_20220202.sky.view
03 Feb 2022 19:26:24,583 INFO : Expanding Mortberg_PrP_MRM_20220202.sky
03 Feb 2022 19:26:24,623 INFO : 2% Done
03 Feb 2022 19:26:24,814 DEBUG: Starting to load chromatogram headers
03 Feb 2022 19:26:24,823 DEBUG: Done loading chromatogram headers
03 Feb 2022 19:26:25,193 INFO : Inserting sp|P04156|PRIO_HUMAN
03 Feb 2022 19:26:25,250 INFO : 13% Done
03 Feb 2022 19:26:26,197 DEBUG: Total peptides inserted: 1
03 Feb 2022 19:26:26,200 INFO : Inserting sp|P04156|PRIO_HUMAN
03 Feb 2022 19:26:26,244 INFO : 22% Done
03 Feb 2022 19:26:27,041 INFO : 30% Done
03 Feb 2022 19:26:27,866 INFO : 41% Done
03 Feb 2022 19:26:28,864 INFO : 50% Done
03 Feb 2022 19:26:29,720 INFO : 59% Done
03 Feb 2022 19:26:30,470 INFO : 68% Done
03 Feb 2022 19:26:31,186 DEBUG: Total peptides inserted: 6
03 Feb 2022 19:26:31,190 INFO : Inserting sp|P04925|PRIO_MOUSE
03 Feb 2022 19:26:31,213 INFO : 74% Done
03 Feb 2022 19:26:31,521 INFO : 80% Done
03 Feb 2022 19:26:31,840 INFO : 86% Done
03 Feb 2022 19:26:32,129 DEBUG: Total peptides inserted: 3
03 Feb 2022 19:26:32,133 INFO : Inserting sp|P67992|PRIO_MACFA
03 Feb 2022 19:26:32,157 INFO : 92% Done
03 Feb 2022 19:26:32,464 INFO : 98% Done
03 Feb 2022 19:26:32,763 DEBUG: Total peptides inserted: 2
03 Feb 2022 19:26:32,764 INFO : Done parsing Skyline document.
03 Feb 2022 19:26:32,766 INFO : Creating and populating temp tables for Proportion values
03 Feb 2022 19:26:32,819 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Feb 2022 19:26:33,013 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Feb 2022 19:26:33,068 INFO : Cleaning up temp tables
03 Feb 2022 19:26:33,327 INFO : Completed import of Skyline document from Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip
03 Feb 2022 19:26:33,329 INFO : 100% Done
03 Feb 2022 19:26:33,335 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical%20study/xar/experiments_and_runs.xar.exploded/Run127084/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip into the system
03 Feb 2022 19:26:33,342 INFO : Done importing xar
03 Feb 2022 19:26:33,343 INFO : Loading pages and webpart properties
03 Feb 2022 19:26:33,419 INFO : Done importing 4 page(s) with 6 webpart(s)
03 Feb 2022 19:26:33,419 INFO : Done importing folder archive for preclinical study
03 Feb 2022 19:26:33,419 INFO : Done importing subfolders and container tabs
03 Feb 2022 19:26:33,419 INFO : Importing files metadata.
03 Feb 2022 19:26:33,419 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export
03 Feb 2022 19:26:33,420 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/chromatogram library
03 Feb 2022 19:26:33,422 DEBUG: [/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/preclinical study] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr - CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical study
03 Feb 2022 19:26:33,423 INFO :
03 Feb 2022 19:26:33,423 INFO : Experiment import completed successfully.
03 Feb 2022 19:26:33,423 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
03 Feb 2022 19:26:53,983 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.UpdateFolderTypeTask' at location 'webserver-high-priority'
03 Feb 2022 19:26:53,983 INFO :
03 Feb 2022 19:26:53,983 INFO : Updating the folder type.
03 Feb 2022 19:26:53,986 INFO : Setting the TargetedMS folder type to 'Experimental Data' for folder '/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM'.
03 Feb 2022 19:26:53,990 INFO : Updating the TargetedMS folder type to 'Peptide Library' for folder '/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library'.
03 Feb 2022 19:26:53,994 INFO : Setting the value of property 'chromLibRevision' to '8'.
03 Feb 2022 19:26:53,997 INFO : Exporting peptide library state in container '/Carr/CSF_Brain_Prion_TSQ_directMRM/chromatogram library' to file '/data/labkey/files/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library/@files/targetedMSLib/chrom_lib_state_export_9568_2022-02-03_19-26-53.tsv'.
03 Feb 2022 19:26:53,999 INFO : Done exporting library state.
03 Feb 2022 19:26:54,015 INFO : Importing peptide library state in container '/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library' to file '/data/labkey/files/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/chromatogram library/@files/targetedMSLib/chrom_lib_state_export_9568_2022-02-03_19-26-53.tsv'.
03 Feb 2022 19:26:54,015 INFO : Done importing library state.
03 Feb 2022 19:26:54,019 INFO : Changing chromatogram library file name from 'chromlib_9568_rev2.clib' to 'chromlib_9851_rev2.clib'.
03 Feb 2022 19:26:54,019 INFO : Changing chromatogram library file name from 'chromlib_9568_rev5.clib' to 'chromlib_9851_rev5.clib'.
03 Feb 2022 19:26:54,020 INFO : Changing chromatogram library file name from 'chromlib_9568_rev7.clib' to 'chromlib_9851_rev7.clib'.
03 Feb 2022 19:26:54,020 INFO : Changing chromatogram library file name from 'chromlib_9568_rev6.clib' to 'chromlib_9851_rev6.clib'.
03 Feb 2022 19:26:54,021 INFO : Changing chromatogram library file name from 'chromlib_9568_rev3.clib' to 'chromlib_9851_rev3.clib'.
03 Feb 2022 19:26:54,021 INFO : Changing chromatogram library file name from 'chromlib_9568_rev1.clib' to 'chromlib_9851_rev1.clib'.
03 Feb 2022 19:26:54,022 INFO : Changing chromatogram library file name from 'chromlib_9568_rev8.clib' to 'chromlib_9851_rev8.clib'.
03 Feb 2022 19:26:54,022 INFO : Changing chromatogram library file name from 'chromlib_9568_rev4.clib' to 'chromlib_9851_rev4.clib'.
03 Feb 2022 19:26:54,026 INFO : Setting the TargetedMS folder type to 'Experimental Data' for folder '/Panorama Public/2022/Carr - CSF_Brain_Prion_TSQ_directMRM/preclinical study'.
03 Feb 2022 19:26:54,027 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.UpdateFolderTypeTask'
03 Feb 2022 19:26:54,081 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
03 Feb 2022 19:26:54,082 INFO :
03 Feb 2022 19:26:54,082 INFO : Finishing up experiment copy.
03 Feb 2022 19:26:54,085 INFO : Adding runs imported in subfolders.
03 Feb 2022 19:26:54,095 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
03 Feb 2022 19:26:54,096 INFO : Setting version on new experiment to 1
03 Feb 2022 19:26:54,096 INFO : Assigning a ProteomeXchange ID.
03 Feb 2022 19:26:54,328 INFO : Assigning a DOI.
03 Feb 2022 19:26:56,365 INFO : Assigned DOI: 10.6069/tks9-v607
03 Feb 2022 19:26:56,370 INFO : Updating access URL to point to the new copy of the data.
03 Feb 2022 19:26:56,375 INFO : Removing copy permissions given to Panorama Public
03 Feb 2022 19:26:56,404 INFO : Adding read permissions to all users that are folder admins in the source folder.
03 Feb 2022 19:26:56,415 INFO : Updating the 'Raw Data' tab configuration
03 Feb 2022 19:26:56,426 INFO : Updating dataFileUrls for run Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip; targetedms run ID 130456
03 Feb 2022 19:26:56,426 INFO : Updating dataFileUrl...
03 Feb 2022 19:26:56,426 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical%20study/xar/experiments_and_runs.xar.exploded/Run127084/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip
03 Feb 2022 19:26:56,426 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM/preclinical%20study/@files/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15.sky.zip
03 Feb 2022 19:26:56,429 INFO : Updating dataFileUrl...
03 Feb 2022 19:26:56,429 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM_a1a5f31c-6794-103a-93e1-fea6ddf5fdda/_temp__2022-02-03_19-12-57/export/subfolders/preclinical%20study/xar/experiments_and_runs.xar.exploded/Run127084/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15/Mortberg_PrP_MRM_20220202.skyd
03 Feb 2022 19:26:56,429 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Carr%20-%20CSF_Brain_Prion_TSQ_directMRM/preclinical%20study/@files/Mortberg_PrP_MRM_20220202_2022-02-01_22-48-15/Mortberg_PrP_MRM_20220202.skyd
03 Feb 2022 19:26:56,432 INFO : Creating a reviewer account.
03 Feb 2022 19:26:56,669 INFO : Created reviewer with email: User panorama+reviewer100@proteinms.net
03 Feb 2022 19:26:56,681 INFO : Hiding the Data Pipeline tab.
03 Feb 2022 19:26:56,693 INFO : Updating Submission. Setting copiedExperimentId to 1388
03 Feb 2022 19:26:56,798 INFO : Emailing submitter.
03 Feb 2022 19:26:56,937 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'