Copying experiment: Quantification of Soy-Derived Ingredients in Model Bread and Frankfurter Matrices with an Optimized LC-MS/MS External Standard Calibration Workflow: /Panorama Public/2021/Nebraska U FARRP - Soy Quantification Method- Matrix Extension

Copying experiment: Quantification of Soy-Derived Ingredients in Model Bread and Frankfurter Matrices with an Optimized LC-MS/MS External Standard Calibration Workflow

Nebraska U FARRP - Soy Quantification Method- Matrix Extension

Job Status

Created:

2021-10-14 11:50:43

Modified:

2021-10-14 12:10:18

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Quantification of Soy-Derived Ingredients in Model Bread and Frankfurter Matrices with an Optimized LC-MS/MS External Standard Calibration Workflow

File Path:

/data/labkey/files/Panorama Public/2021/Nebraska U FARRP - Soy Quantification Method- Matrix Extension/@files/Experiment_1379.log

Files:

Experiment_1379.log

Join job:

Status	Description

Split jobs:

Status	Description

Completed Runs:

Calibration Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip
AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip

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14 Oct 2021 11:50:43,873 INFO : Copying experiment "Quantification of Soy-Derived Ingredients in Model Bread and Frankfurter Matrices with an Optimized LC-MS/MS External Standard Calibration Workflow" from folder /Nebraska U - FARRP/Soy/Soy Quantification Method- Matrix Extension to /Panorama Public/2021/Nebraska U FARRP - Soy Quantification Method- Matrix Extension

14 Oct 2021 11:50:43,873 INFO : =======================================

14 Oct 2021 11:51:09,850 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

14 Oct 2021 11:51:09,850 INFO :

14 Oct 2021 11:51:09,850 INFO : Exporting experiment.

14 Oct 2021 12:00:47,181 INFO :

14 Oct 2021 12:00:47,182 INFO : Experiment export completed successfully.

14 Oct 2021 12:00:47,182 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

14 Oct 2021 12:00:47,234 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

14 Oct 2021 12:00:47,234 INFO :

14 Oct 2021 12:00:47,234 INFO : Importing experiment.

14 Oct 2021 12:00:47,240 INFO : Loading folder properties (folder type, settings and active modules)

14 Oct 2021 12:00:47,317 INFO : Done importing folder properties (folder type, settings and active modules)

14 Oct 2021 12:00:47,320 INFO : Loading etl definitions

14 Oct 2021 12:00:47,323 INFO : Loading wikis

14 Oct 2021 12:00:47,331 INFO : 1 wiki imported

14 Oct 2021 12:00:47,331 INFO : Done importing wikis

14 Oct 2021 12:00:47,331 INFO : Starting to copy files

14 Oct 2021 12:02:49,018 INFO : 73 files copied, now copying 20200824_JK_61_2ppm_r.raw

14 Oct 2021 12:04:52,414 INFO : 147 files copied, now copying 20200824_JK_63_100ppm.raw

14 Oct 2021 12:06:54,618 INFO : 222 files copied, now copying 20200922_JK_10ppm_SPC_inner_1.raw

14 Oct 2021 12:08:56,470 INFO : 307 files copied, now copying 20200920_JK_1ppm_dough_2.raw

14 Oct 2021 12:09:56,034 INFO : 350 files copied, now copying Calibration Curves_FinalQuantPep.sky

14 Oct 2021 12:09:56,615 INFO : 355 files copied, now copying AllMatrices_QuantPep.sky

14 Oct 2021 12:09:56,965 INFO : Copied 360 files

14 Oct 2021 12:09:56,965 INFO : Ensuring exp.data rows exist for imported files

14 Oct 2021 12:09:58,986 INFO : Starting Sample Type and Data Class import

14 Oct 2021 12:09:58,986 INFO : No types XAR file to process.

14 Oct 2021 12:09:58,986 INFO : Finished importing Sample Types and Data Classes

14 Oct 2021 12:09:58,988 INFO : Loading xar

14 Oct 2021 12:09:59,342 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip'

14 Oct 2021 12:09:59,346 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip.Core'

14 Oct 2021 12:09:59,348 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip.Output'

14 Oct 2021 12:09:59,348 DEBUG: Protocol import complete

14 Oct 2021 12:09:59,350 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9204:Quantification+of+Soy-Derived+Ingredients+in+Model+Bread+and+Frankfurter+Matrices+with+an+Optimized+LC-MS%2FMS+External+Standard+Calibration+Workflow'

14 Oct 2021 12:09:59,350 DEBUG: Experiment/Run group import complete

14 Oct 2021 12:09:59,359 DEBUG: Protocol action set import complete

14 Oct 2021 12:09:59,372 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip'

14 Oct 2021 12:09:59,384 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9204:3557c3e1-0a83-103a-b54f-fea6ddf5779e'

14 Oct 2021 12:09:59,389 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9204:3557c3d0-0a83-103a-b54f-fea6ddf5779e'

14 Oct 2021 12:09:59,389 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip.Core'

14 Oct 2021 12:09:59,392 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip.Output'

14 Oct 2021 12:09:59,393 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9204:3557c40b-0a83-103a-b54f-fea6ddf5779e'

14 Oct 2021 12:09:59,401 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip'

14 Oct 2021 12:09:59,406 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9204:3557ba61-0a83-103a-b54f-fea6ddf5779e'

14 Oct 2021 12:09:59,410 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9204:3557ba51-0a83-103a-b54f-fea6ddf5779e'

14 Oct 2021 12:09:59,410 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip.Core'

14 Oct 2021 12:09:59,412 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9204:TargetedMS.ImportSkyZip.Output'

14 Oct 2021 12:09:59,413 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9204:3557ba9a-0a83-103a-b54f-fea6ddf5779e'

14 Oct 2021 12:09:59,416 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119177/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17/Calibration%20Curves_FinalQuantPep.skyd into the system

14 Oct 2021 12:09:59,416 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119177/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17/Calibration%20Curves_FinalQuantPep.skyd into the system

14 Oct 2021 12:09:59,417 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119177/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip into the system

14 Oct 2021 12:09:59,418 INFO : Starting import from Calibration Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip

14 Oct 2021 12:09:59,423 INFO : Starting to import Skyline document from Calibration Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip

14 Oct 2021 12:09:59,428 INFO : Expanding Confirmatory-4.blib

14 Oct 2021 12:09:59,429 INFO : Expanding Confirmatory-4.redundant.blib

14 Oct 2021 12:09:59,446 INFO : Expanding Calibration Curves_FinalQuantPep.skyd

14 Oct 2021 12:09:59,527 INFO : Expanding Calibration Curves_FinalQuantPep.sky.view

14 Oct 2021 12:09:59,527 INFO : Expanding Calibration Curves_FinalQuantPep.sky

14 Oct 2021 12:09:59,533 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

14 Oct 2021 12:09:59,543 INFO : 8% Done

14 Oct 2021 12:09:59,682 DEBUG: Starting to load chromatogram headers

14 Oct 2021 12:09:59,685 DEBUG: Done loading chromatogram headers

14 Oct 2021 12:09:59,906 INFO : Inserting sp|P13916|GLCA_SOYBN

14 Oct 2021 12:09:59,942 INFO : 32% Done

14 Oct 2021 12:10:00,255 DEBUG: Total peptides inserted: 1

14 Oct 2021 12:10:00,260 INFO : Inserting sp|P04405|GLYG2_SOYBN

14 Oct 2021 12:10:00,293 INFO : 56% Done

14 Oct 2021 12:10:00,600 DEBUG: Total peptides inserted: 1

14 Oct 2021 12:10:00,604 INFO : Inserting sp|P04776|GLYG1_SOYBN

14 Oct 2021 12:10:00,633 INFO : 80% Done

14 Oct 2021 12:10:00,909 DEBUG: Total peptides inserted: 1

14 Oct 2021 12:10:00,911 INFO : Done parsing Skyline document.

14 Oct 2021 12:10:00,919 INFO : Calculating fold changes

14 Oct 2021 12:10:00,919 DEBUG: Calculating fold change for group comparison Treatment, 1 of 2

14 Oct 2021 12:10:01,074 INFO : 85% Done

14 Oct 2021 12:10:01,074 DEBUG: Calculating fold change for group comparison Ingredients, 2 of 2

14 Oct 2021 12:10:01,228 INFO : 89% Done

14 Oct 2021 12:10:01,228 INFO : Done calculating fold changes.

14 Oct 2021 12:10:01,228 INFO : Calculating calibration curves

14 Oct 2021 12:10:01,229 DEBUG: Calculating calibration curve for sp|P13916|GLCA_SOYBN, 1 of 3

14 Oct 2021 12:10:01,289 INFO : 92% Done

14 Oct 2021 12:10:01,289 DEBUG: Calculating calibration curve for sp|P04405|GLYG2_SOYBN, 2 of 3

14 Oct 2021 12:10:01,360 INFO : 95% Done

14 Oct 2021 12:10:01,360 DEBUG: Calculating calibration curve for sp|P04776|GLYG1_SOYBN, 3 of 3

14 Oct 2021 12:10:01,435 INFO : 98% Done

14 Oct 2021 12:10:01,513 INFO : Done calculating calibration curves.

14 Oct 2021 12:10:01,515 INFO : Creating and populating temp tables for Proportion values

14 Oct 2021 12:10:01,545 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

14 Oct 2021 12:10:01,585 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

14 Oct 2021 12:10:01,598 INFO : Cleaning up temp tables

14 Oct 2021 12:10:01,843 INFO : Completed import of Skyline document from Calibration Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip

14 Oct 2021 12:10:01,846 INFO : 100% Done

14 Oct 2021 12:10:01,851 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119177/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip into the system

14 Oct 2021 12:10:01,851 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119176/AllMatrices_QuantPep_2021-10-08_11-35-52/AllMatrices_QuantPep.skyd into the system

14 Oct 2021 12:10:01,852 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119176/AllMatrices_QuantPep_2021-10-08_11-35-52/AllMatrices_QuantPep.skyd into the system

14 Oct 2021 12:10:01,852 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119176/AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip into the system

14 Oct 2021 12:10:01,853 INFO : Starting import from AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip

14 Oct 2021 12:10:01,855 INFO : Starting to import Skyline document from AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip

14 Oct 2021 12:10:01,862 INFO : Expanding Confirmatory-4.blib

14 Oct 2021 12:10:01,863 INFO : Expanding Confirmatory-4.redundant.blib

14 Oct 2021 12:10:01,877 INFO : Expanding AllMatrices_QuantPep.skyd

14 Oct 2021 12:10:02,011 INFO : Expanding AllMatrices_QuantPep.sky.view

14 Oct 2021 12:10:02,012 INFO : Expanding AllMatrices_QuantPep.sky

14 Oct 2021 12:10:02,022 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

14 Oct 2021 12:10:02,034 INFO : 6% Done

14 Oct 2021 12:10:02,230 DEBUG: Starting to load chromatogram headers

14 Oct 2021 12:10:02,234 DEBUG: Done loading chromatogram headers

14 Oct 2021 12:10:02,658 INFO : Inserting sp|P13916|GLCA_SOYBN

14 Oct 2021 12:10:02,691 INFO : 22% Done

14 Oct 2021 12:10:03,052 INFO : 36% Done

14 Oct 2021 12:10:03,362 DEBUG: Total peptides inserted: 2

14 Oct 2021 12:10:03,365 INFO : Inserting sp|P04405|GLYG2_SOYBN

14 Oct 2021 12:10:03,396 INFO : 50% Done

14 Oct 2021 12:10:03,740 INFO : 66% Done

14 Oct 2021 12:10:04,059 DEBUG: Total peptides inserted: 2

14 Oct 2021 12:10:04,063 INFO : Inserting sp|P04776|GLYG1_SOYBN

14 Oct 2021 12:10:04,112 INFO : 80% Done

14 Oct 2021 12:10:04,441 DEBUG: Total peptides inserted: 1

14 Oct 2021 12:10:04,442 INFO : Done parsing Skyline document.

14 Oct 2021 12:10:04,459 INFO : Calculating fold changes

14 Oct 2021 12:10:04,459 DEBUG: Calculating fold change for group comparison Treatment, 1 of 2

14 Oct 2021 12:10:04,734 INFO : 85% Done

14 Oct 2021 12:10:04,735 DEBUG: Calculating fold change for group comparison Ingredients, 2 of 2

14 Oct 2021 12:10:05,051 INFO : 89% Done

14 Oct 2021 12:10:05,051 INFO : Done calculating fold changes.

14 Oct 2021 12:10:05,051 INFO : Calculating calibration curves

14 Oct 2021 12:10:05,052 DEBUG: Calculating calibration curve for sp|P13916|GLCA_SOYBN, 1 of 3

14 Oct 2021 12:10:05,186 INFO : 92% Done

14 Oct 2021 12:10:05,187 DEBUG: Calculating calibration curve for sp|P04405|GLYG2_SOYBN, 2 of 3

14 Oct 2021 12:10:05,321 INFO : 95% Done

14 Oct 2021 12:10:05,321 DEBUG: Calculating calibration curve for sp|P04776|GLYG1_SOYBN, 3 of 3

14 Oct 2021 12:10:05,389 INFO : 98% Done

14 Oct 2021 12:10:05,390 INFO : Done calculating calibration curves.

14 Oct 2021 12:10:05,391 INFO : Creating and populating temp tables for Proportion values

14 Oct 2021 12:10:05,413 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

14 Oct 2021 12:10:05,479 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

14 Oct 2021 12:10:05,505 INFO : Cleaning up temp tables

14 Oct 2021 12:10:05,747 INFO : Completed import of Skyline document from AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip

14 Oct 2021 12:10:05,750 INFO : 100% Done

14 Oct 2021 12:10:05,754 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119176/AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip into the system

14 Oct 2021 12:10:05,765 INFO : Done importing xar

14 Oct 2021 12:10:05,768 INFO : Loading pages and webpart properties

14 Oct 2021 12:10:05,853 INFO : Done importing pages and webpart properties

14 Oct 2021 12:10:05,853 INFO :

14 Oct 2021 12:10:05,853 INFO : Experiment import completed successfully.

14 Oct 2021 12:10:05,853 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

14 Oct 2021 12:10:05,903 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

14 Oct 2021 12:10:05,904 INFO :

14 Oct 2021 12:10:05,904 INFO : Finishing up experiment copy.

14 Oct 2021 12:10:05,905 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

14 Oct 2021 12:10:05,907 INFO : Assigning a ProteomeXchange ID.

14 Oct 2021 12:10:06,517 INFO : Assigning a DOI.

14 Oct 2021 12:10:08,688 INFO : Assigned DOI: 10.6069/rzyh-9n48

14 Oct 2021 12:10:08,692 INFO : Updating access URL to point to the new copy of the data.

14 Oct 2021 12:10:08,700 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

14 Oct 2021 12:10:08,701 INFO : Removing copy permissions given to journal.

14 Oct 2021 12:10:08,714 INFO : Adding read permissions to all users that are folder admins in the source container.

14 Oct 2021 12:10:08,723 INFO : Setting the TargetedMS folder type to 'Experimental Data'

14 Oct 2021 12:10:08,732 INFO : Updating the 'Raw Data' tab configuration

14 Oct 2021 12:10:08,736 INFO : Updating dataFileUrls for run Calibration Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip; targetedms run ID 122445

14 Oct 2021 12:10:08,737 INFO : Updating dataFileUrl...

14 Oct 2021 12:10:08,737 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119177/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip

14 Oct 2021 12:10:08,738 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension/@files/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17.sky.zip

14 Oct 2021 12:10:08,741 INFO : Updating dataFileUrl...

14 Oct 2021 12:10:08,741 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119177/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17/Calibration%20Curves_FinalQuantPep.skyd

14 Oct 2021 12:10:08,741 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension/@files/Calibration%20Curves_FinalQuantPep_2021-10-08_11-39-17/Calibration%20Curves_FinalQuantPep.skyd

14 Oct 2021 12:10:08,745 INFO : Updating dataFileUrls for run AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip; targetedms run ID 122446

14 Oct 2021 12:10:08,745 INFO : Updating dataFileUrl...

14 Oct 2021 12:10:08,745 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119176/AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip

14 Oct 2021 12:10:08,745 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension/@files/AllMatrices_QuantPep_2021-10-08_11-35-52.sky.zip

14 Oct 2021 12:10:08,747 INFO : Updating dataFileUrl...

14 Oct 2021 12:10:08,747 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension_f70e5cf1-0f4c-103a-b54f-fea6ddf5779e/_temp__2021-10-14_11-50-43/export/xar/experiments_and_runs.xar.exploded/Run119176/AllMatrices_QuantPep_2021-10-08_11-35-52/AllMatrices_QuantPep.skyd

14 Oct 2021 12:10:08,747 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Soy%20Quantification%20Method-%20Matrix%20Extension/@files/AllMatrices_QuantPep_2021-10-08_11-35-52/AllMatrices_QuantPep.skyd

14 Oct 2021 12:10:08,750 INFO : Creating a reviewer account.

14 Oct 2021 12:10:09,014 INFO : Created reviewer with email: User panorama+reviewer73@proteinms.net

14 Oct 2021 12:10:09,022 INFO : Hiding the Data Pipeline tab.

14 Oct 2021 12:10:09,110 INFO : Emailing submitter.

14 Oct 2021 12:10:09,233 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'