26 Mar 2024 14:33:24,157 DEBUG: Resetting Job ID: f4e7efe0-cde5-103c-8ae5-fea6ddf5ffa2

26 Mar 2024 14:33:24,182 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 Mar 2024 14:33:24,184 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-26_17-33-10.sky.zip

26 Mar 2024 14:33:24,184 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

26 Mar 2024 14:33:25,180 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

26 Mar 2024 14:33:25,273 INFO : 2% Done

26 Mar 2024 14:33:25,563 DEBUG: Starting to load chromatogram headers

26 Mar 2024 14:33:25,575 DEBUG: Done loading chromatogram headers

26 Mar 2024 14:33:25,844 INFO : Inserting Precursors_Mix_1

26 Mar 2024 14:33:25,853 INFO : 4% Done

26 Mar 2024 14:33:25,917 INFO : 7% Done

26 Mar 2024 14:33:25,982 INFO : 10% Done

26 Mar 2024 14:33:26,050 INFO : 12% Done

26 Mar 2024 14:33:26,116 INFO : 14% Done

26 Mar 2024 14:33:26,183 INFO : 17% Done

26 Mar 2024 14:33:26,250 INFO : 19% Done

26 Mar 2024 14:33:26,314 INFO : 22% Done

26 Mar 2024 14:33:26,379 INFO : 25% Done

26 Mar 2024 14:33:26,442 INFO : 27% Done

26 Mar 2024 14:33:26,509 INFO : 30% Done

26 Mar 2024 14:33:26,571 INFO : 32% Done

26 Mar 2024 14:33:26,637 INFO : 35% Done

26 Mar 2024 14:33:26,699 INFO : 37% Done

26 Mar 2024 14:33:26,764 INFO : 40% Done

26 Mar 2024 14:33:26,826 INFO : 43% Done

26 Mar 2024 14:33:26,890 INFO : 45% Done

26 Mar 2024 14:33:26,953 INFO : 47% Done

26 Mar 2024 14:33:27,015 INFO : 50% Done

26 Mar 2024 14:33:27,079 INFO : 53% Done

26 Mar 2024 14:33:27,142 INFO : 55% Done

26 Mar 2024 14:33:27,204 INFO : 58% Done

26 Mar 2024 14:33:27,269 INFO : 60% Done

26 Mar 2024 14:33:27,325 DEBUG: Total molecules inserted: 23

26 Mar 2024 14:33:27,326 INFO : Done parsing Skyline document.

26 Mar 2024 14:33:27,388 INFO : No group comparisons found.

26 Mar 2024 14:33:27,388 INFO : Calculating calibration curves

26 Mar 2024 14:33:27,389 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

26 Mar 2024 14:33:27,674 INFO : 68% Done

26 Mar 2024 14:33:27,678 INFO : Done calculating calibration curves.

26 Mar 2024 14:33:27,679 INFO : Updating previously imported data for 85 old sample files.

26 Mar 2024 14:33:27,680 DEBUG: Found data for the following old sample files in the QC folder:

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\03_26_24_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210630_OLD_CON.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_04.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj8.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_03.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj9.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210630_800QC_A.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210825_800CON_01.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_02.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\11_03_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw

26 Mar 2024 14:33:27,680 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210330_800CON.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210903_800CON.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210825_800CON_07.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210901_800CON_small.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_01.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\02_17_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210506_CON_02.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210506_CON_08.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210323_800CON.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj5.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj7.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210825_800CON_06.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210506_CON_01.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-2.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj6.raw

26 Mar 2024 14:33:27,681 DEBUG:   D:\AutoQC\raw files\20210506_CON_09.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_05.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_800CON_A.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210825_800CON_04.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj3.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-3.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_12.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_06.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_03.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\11_01_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210825_800CON_05.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_07.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj4.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\04_11_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj1.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_11.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210825_800CON_02.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210506_CON_10.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\20210826_800CON.raw

26 Mar 2024 14:33:27,682 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\20210506_800CON.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj2.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\20210825_800CON_03.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\20210506_CON_04.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 14:33:27,683 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw

26 Mar 2024 14:33:33,138 INFO : 98% Done

26 Mar 2024 14:33:33,139 INFO : Done updating previously imported sample file data.

26 Mar 2024 14:33:33,834 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-26_17-18-59.sky.zip have been updated with newer data.

26 Mar 2024 14:33:33,834 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-26_17-18-59.sky.zip

26 Mar 2024 14:33:33,834 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-26_17-18-59

26 Mar 2024 14:33:33,834 INFO : Creating and populating temp tables for Proportion values

26 Mar 2024 14:33:33,848 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Mar 2024 14:33:34,006 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Mar 2024 14:33:34,062 INFO : Cleaning up temp tables

26 Mar 2024 14:33:34,376 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-26_17-33-10.sky.zip

26 Mar 2024 14:33:34,378 INFO : 100% Done

26 Mar 2024 14:33:34,405 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'