25 Mar 2024 12:23:29,506 DEBUG: Resetting Job ID: 0f035516-cd0b-103c-9b9b-fea6ddf56e5e

25 Mar 2024 12:23:29,526 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

25 Mar 2024 12:23:29,527 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-23-17.sky.zip

25 Mar 2024 12:23:29,527 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

25 Mar 2024 12:23:30,473 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

25 Mar 2024 12:23:30,489 INFO : 2% Done

25 Mar 2024 12:23:30,831 DEBUG: Starting to load chromatogram headers

25 Mar 2024 12:23:30,841 DEBUG: Done loading chromatogram headers

25 Mar 2024 12:23:32,834 INFO : Inserting Precursors_Mix_1

25 Mar 2024 12:23:32,842 INFO : 4% Done

25 Mar 2024 12:23:32,903 INFO : 7% Done

25 Mar 2024 12:23:32,963 INFO : 10% Done

25 Mar 2024 12:23:33,025 INFO : 12% Done

25 Mar 2024 12:23:33,087 INFO : 14% Done

25 Mar 2024 12:23:33,147 INFO : 17% Done

25 Mar 2024 12:23:33,211 INFO : 20% Done

25 Mar 2024 12:23:33,274 INFO : 22% Done

25 Mar 2024 12:23:33,334 INFO : 25% Done

25 Mar 2024 12:23:33,392 INFO : 27% Done

25 Mar 2024 12:23:33,452 INFO : 29% Done

25 Mar 2024 12:23:33,516 INFO : 32% Done

25 Mar 2024 12:23:33,585 INFO : 35% Done

25 Mar 2024 12:23:33,650 INFO : 37% Done

25 Mar 2024 12:23:33,715 INFO : 40% Done

25 Mar 2024 12:23:33,780 INFO : 43% Done

25 Mar 2024 12:23:33,845 INFO : 45% Done

25 Mar 2024 12:23:33,910 INFO : 47% Done

25 Mar 2024 12:23:33,974 INFO : 50% Done

25 Mar 2024 12:23:34,038 INFO : 53% Done

25 Mar 2024 12:23:34,103 INFO : 55% Done

25 Mar 2024 12:23:34,169 INFO : 58% Done

25 Mar 2024 12:23:34,236 INFO : 60% Done

25 Mar 2024 12:23:34,294 DEBUG: Total molecules inserted: 23

25 Mar 2024 12:23:34,296 INFO : Done parsing Skyline document.

25 Mar 2024 12:23:34,356 INFO : No group comparisons found.

25 Mar 2024 12:23:34,356 INFO : Calculating calibration curves

25 Mar 2024 12:23:34,357 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

25 Mar 2024 12:23:34,616 INFO : 68% Done

25 Mar 2024 12:23:34,621 INFO : Done calculating calibration curves.

25 Mar 2024 12:23:34,621 INFO : Updating previously imported data for 86 old sample files.

25 Mar 2024 12:23:34,621 DEBUG: Found data for the following old sample files in the QC folder:

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210630_OLD_CON.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_04.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj8.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_03.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj9.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210630_800QC_A.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210825_800CON_01.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_02.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\11_03_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,622 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210330_800CON.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210903_800CON.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210825_800CON_07.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210901_800CON_small.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_01.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\02_17_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210506_CON_02.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210506_CON_08.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210323_800CON.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj5.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj7.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210825_800CON_06.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210506_CON_01.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-2.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\03_25_24_Blank1_20240325140058.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj6.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210506_CON_09.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210506_CON_05.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210506_800CON_A.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\20210825_800CON_04.raw

25 Mar 2024 12:23:34,623 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj3.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-3.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_12.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_06.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_03.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\11_01_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210825_800CON_05.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_07.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj4.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\04_11_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_11.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210825_800CON_02.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_10.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\03_25_24_Orbitrap_240_800_CON_PFAS-1_20240325143256.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210826_800CON.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_800CON.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj2.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210825_800CON_03.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20210506_CON_04.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 12:23:34,624 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw

25 Mar 2024 12:23:40,123 INFO : 98% Done

25 Mar 2024 12:23:40,123 INFO : Done updating previously imported sample file data.

25 Mar 2024 12:23:40,868 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-08-27.sky.zip have been updated with newer data.

25 Mar 2024 12:23:40,868 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-08-27.sky.zip

25 Mar 2024 12:23:40,868 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-08-27

25 Mar 2024 12:23:40,868 INFO : Creating and populating temp tables for Proportion values

25 Mar 2024 12:23:40,881 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

25 Mar 2024 12:23:41,031 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

25 Mar 2024 12:23:41,085 INFO : Cleaning up temp tables

25 Mar 2024 12:23:41,366 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-23-17.sky.zip

25 Mar 2024 12:23:41,368 INFO : 100% Done

25 Mar 2024 12:23:41,394 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'