17 Feb 2023 08:54:35,455 DEBUG: Resetting Job ID: e461eecd-9110-103b-b327-fea6ddf5f3bc

17 Feb 2023 08:54:35,471 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

17 Feb 2023 08:54:35,472 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-02-17_11-54-20.sky.zip

17 Feb 2023 08:54:35,473 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

17 Feb 2023 08:54:36,539 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

17 Feb 2023 08:54:36,557 INFO : 2% Done

17 Feb 2023 08:54:36,901 DEBUG: Starting to load chromatogram headers

17 Feb 2023 08:54:36,911 DEBUG: Done loading chromatogram headers

17 Feb 2023 08:54:37,260 INFO : Inserting Precursors_Mix_1

17 Feb 2023 08:54:37,267 INFO : 4% Done

17 Feb 2023 08:54:37,331 INFO : 7% Done

17 Feb 2023 08:54:37,398 INFO : 10% Done

17 Feb 2023 08:54:37,461 INFO : 12% Done

17 Feb 2023 08:54:37,525 INFO : 14% Done

17 Feb 2023 08:54:37,590 INFO : 17% Done

17 Feb 2023 08:54:37,653 INFO : 19% Done

17 Feb 2023 08:54:37,723 INFO : 22% Done

17 Feb 2023 08:54:37,792 INFO : 25% Done

17 Feb 2023 08:54:37,857 INFO : 27% Done

17 Feb 2023 08:54:37,925 INFO : 29% Done

17 Feb 2023 08:54:37,988 INFO : 32% Done

17 Feb 2023 08:54:38,053 INFO : 35% Done

17 Feb 2023 08:54:38,116 INFO : 37% Done

17 Feb 2023 08:54:38,181 INFO : 40% Done

17 Feb 2023 08:54:38,246 INFO : 43% Done

17 Feb 2023 08:54:38,312 INFO : 45% Done

17 Feb 2023 08:54:38,378 INFO : 47% Done

17 Feb 2023 08:54:38,444 INFO : 50% Done

17 Feb 2023 08:54:38,511 INFO : 53% Done

17 Feb 2023 08:54:38,577 INFO : 55% Done

17 Feb 2023 08:54:38,640 INFO : 58% Done

17 Feb 2023 08:54:38,705 INFO : 60% Done

17 Feb 2023 08:54:38,761 DEBUG: Total molecules inserted: 23

17 Feb 2023 08:54:38,763 INFO : Done parsing Skyline document.

17 Feb 2023 08:54:38,819 INFO : No group comparisons found.

17 Feb 2023 08:54:38,819 INFO : Calculating calibration curves

17 Feb 2023 08:54:38,819 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

17 Feb 2023 08:54:39,050 INFO : 68% Done

17 Feb 2023 08:54:39,054 INFO : Done calculating calibration curves.

17 Feb 2023 08:54:39,076 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 78

17 Feb 2023 08:54:39,085 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 78

17 Feb 2023 08:54:39,087 INFO : 69% Done

17 Feb 2023 08:54:39,094 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 78

17 Feb 2023 08:54:39,101 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 78

17 Feb 2023 08:54:39,103 INFO : 70% Done

17 Feb 2023 08:54:39,111 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 5 of 78

17 Feb 2023 08:54:39,117 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 78

17 Feb 2023 08:54:39,124 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 78

17 Feb 2023 08:54:39,125 INFO : 71% Done

17 Feb 2023 08:54:39,133 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 8 of 78

17 Feb 2023 08:54:39,140 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 9 of 78

17 Feb 2023 08:54:39,141 INFO : 72% Done

17 Feb 2023 08:54:39,149 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 10 of 78

17 Feb 2023 08:54:39,156 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 11 of 78

17 Feb 2023 08:54:39,164 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 12 of 78

17 Feb 2023 08:54:39,165 INFO : 73% Done

17 Feb 2023 08:54:39,172 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 13 of 78

17 Feb 2023 08:54:39,178 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 14 of 78

17 Feb 2023 08:54:39,185 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 15 of 78

17 Feb 2023 08:54:39,186 INFO : 74% Done

17 Feb 2023 08:54:39,192 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 16 of 78

17 Feb 2023 08:54:39,199 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 17 of 78

17 Feb 2023 08:54:39,200 INFO : 75% Done

17 Feb 2023 08:54:39,206 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 18 of 78

17 Feb 2023 08:54:39,213 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 19 of 78

17 Feb 2023 08:54:39,220 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 20 of 78

17 Feb 2023 08:54:39,221 INFO : 76% Done

17 Feb 2023 08:54:39,228 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 21 of 78

17 Feb 2023 08:54:39,234 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 22 of 78

17 Feb 2023 08:54:39,241 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 23 of 78

17 Feb 2023 08:54:39,242 INFO : 77% Done

17 Feb 2023 08:54:39,248 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 24 of 78

17 Feb 2023 08:54:39,255 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 25 of 78

17 Feb 2023 08:54:39,256 INFO : 78% Done

17 Feb 2023 08:54:39,263 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 26 of 78

17 Feb 2023 08:54:39,270 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 27 of 78

17 Feb 2023 08:54:39,271 INFO : 79% Done

17 Feb 2023 08:54:39,277 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 28 of 78

17 Feb 2023 08:54:39,284 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 29 of 78

17 Feb 2023 08:54:39,291 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 30 of 78

17 Feb 2023 08:54:39,298 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 31 of 78

17 Feb 2023 08:54:39,299 INFO : 80% Done

17 Feb 2023 08:54:39,305 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 32 of 78

17 Feb 2023 08:54:39,312 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 33 of 78

17 Feb 2023 08:54:39,313 INFO : 81% Done

17 Feb 2023 08:54:39,319 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 34 of 78

17 Feb 2023 08:54:39,326 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 35 of 78

17 Feb 2023 08:54:39,327 INFO : 82% Done

17 Feb 2023 08:54:39,333 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 36 of 78

17 Feb 2023 08:54:39,340 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 37 of 78

17 Feb 2023 08:54:39,347 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 38 of 78

17 Feb 2023 08:54:39,347 INFO : 83% Done

17 Feb 2023 08:54:39,354 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 39 of 78

17 Feb 2023 08:54:39,361 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 40 of 78

17 Feb 2023 08:54:39,368 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 41 of 78

17 Feb 2023 08:54:39,369 INFO : 84% Done

17 Feb 2023 08:54:39,375 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 42 of 78

17 Feb 2023 08:54:39,382 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 43 of 78

17 Feb 2023 08:54:39,383 INFO : 85% Done

17 Feb 2023 08:54:39,389 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 44 of 78

17 Feb 2023 08:54:39,396 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 45 of 78

17 Feb 2023 08:54:39,403 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 46 of 78

17 Feb 2023 08:54:39,403 INFO : 86% Done

17 Feb 2023 08:54:39,410 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 47 of 78

17 Feb 2023 08:54:39,417 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 48 of 78

17 Feb 2023 08:54:39,417 INFO : 87% Done

17 Feb 2023 08:54:39,424 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 49 of 78

17 Feb 2023 08:54:39,431 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 50 of 78

17 Feb 2023 08:54:39,437 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 51 of 78

17 Feb 2023 08:54:39,438 INFO : 88% Done

17 Feb 2023 08:54:39,445 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 52 of 78

17 Feb 2023 08:54:39,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 53 of 78

17 Feb 2023 08:54:39,459 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 54 of 78

17 Feb 2023 08:54:39,460 INFO : 89% Done

17 Feb 2023 08:54:39,474 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 55 of 78

17 Feb 2023 08:54:39,481 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 56 of 78

17 Feb 2023 08:54:39,483 INFO : 90% Done

17 Feb 2023 08:54:39,490 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 57 of 78

17 Feb 2023 08:54:39,498 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 58 of 78

17 Feb 2023 08:54:39,506 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 59 of 78

17 Feb 2023 08:54:39,507 INFO : 91% Done

17 Feb 2023 08:54:39,514 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 60 of 78

17 Feb 2023 08:54:39,522 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 61 of 78

17 Feb 2023 08:54:39,529 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 62 of 78

17 Feb 2023 08:54:39,530 INFO : 92% Done

17 Feb 2023 08:54:39,538 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 63 of 78

17 Feb 2023 08:54:39,545 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 64 of 78

17 Feb 2023 08:54:39,546 INFO : 93% Done

17 Feb 2023 08:54:39,553 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 65 of 78

17 Feb 2023 08:54:39,560 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 66 of 78

17 Feb 2023 08:54:39,561 INFO : 94% Done

17 Feb 2023 08:54:39,569 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 67 of 78

17 Feb 2023 08:54:39,576 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 68 of 78

17 Feb 2023 08:54:39,583 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 69 of 78

17 Feb 2023 08:54:39,628 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 70 of 78

17 Feb 2023 08:54:39,629 INFO : 95% Done

17 Feb 2023 08:54:39,637 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 71 of 78

17 Feb 2023 08:54:39,644 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 72 of 78

17 Feb 2023 08:54:39,646 INFO : 96% Done

17 Feb 2023 08:54:39,653 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 73 of 78

17 Feb 2023 08:54:39,661 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 74 of 78

17 Feb 2023 08:54:39,662 INFO : 97% Done

17 Feb 2023 08:54:39,669 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 75 of 78

17 Feb 2023 08:54:39,676 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 76 of 78

17 Feb 2023 08:54:39,682 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 77 of 78

17 Feb 2023 08:54:39,683 INFO : 98% Done

17 Feb 2023 08:54:39,690 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 78 of 78

17 Feb 2023 08:54:39,690 INFO : Done updating previously imported sample file data.

17 Feb 2023 08:54:40,326 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-42-46.sky.zip have been updated with newer data.

17 Feb 2023 08:54:40,327 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-42-46.sky.zip

17 Feb 2023 08:54:40,327 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-42-46

17 Feb 2023 08:54:40,327 INFO : Creating and populating temp tables for Proportion values

17 Feb 2023 08:54:40,414 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

17 Feb 2023 08:54:40,593 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

17 Feb 2023 08:54:40,655 INFO : Cleaning up temp tables

17 Feb 2023 08:54:40,897 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-02-17_11-54-20.sky.zip

17 Feb 2023 08:54:40,899 INFO : 100% Done

17 Feb 2023 08:54:40,927 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'