27 Sep 2022 15:43:00,021 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Sep 2022 15:43:00,023 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-42-46.sky.zip

27 Sep 2022 15:43:00,023 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

27 Sep 2022 15:43:01,067 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

27 Sep 2022 15:43:01,185 INFO : 2% Done

27 Sep 2022 15:43:01,427 DEBUG: Starting to load chromatogram headers

27 Sep 2022 15:43:01,437 DEBUG: Done loading chromatogram headers

27 Sep 2022 15:43:01,906 INFO : Inserting Precursors_Mix_1

27 Sep 2022 15:43:01,930 INFO : 4% Done

27 Sep 2022 15:43:01,999 INFO : 7% Done

27 Sep 2022 15:43:02,067 INFO : 10% Done

27 Sep 2022 15:43:02,132 INFO : 12% Done

27 Sep 2022 15:43:02,199 INFO : 14% Done

27 Sep 2022 15:43:02,265 INFO : 17% Done

27 Sep 2022 15:43:02,332 INFO : 20% Done

27 Sep 2022 15:43:02,412 INFO : 22% Done

27 Sep 2022 15:43:02,520 INFO : 25% Done

27 Sep 2022 15:43:02,619 INFO : 27% Done

27 Sep 2022 15:43:02,717 INFO : 29% Done

27 Sep 2022 15:43:02,809 INFO : 32% Done

27 Sep 2022 15:43:02,909 INFO : 35% Done

27 Sep 2022 15:43:03,009 INFO : 37% Done

27 Sep 2022 15:43:03,106 INFO : 40% Done

27 Sep 2022 15:43:03,192 INFO : 43% Done

27 Sep 2022 15:43:03,276 INFO : 45% Done

27 Sep 2022 15:43:03,372 INFO : 47% Done

27 Sep 2022 15:43:03,469 INFO : 50% Done

27 Sep 2022 15:43:03,570 INFO : 53% Done

27 Sep 2022 15:43:03,665 INFO : 55% Done

27 Sep 2022 15:43:03,763 INFO : 58% Done

27 Sep 2022 15:43:03,860 INFO : 60% Done

27 Sep 2022 15:43:03,948 DEBUG: Total molecules inserted: 23

27 Sep 2022 15:43:03,949 INFO : Done parsing Skyline document.

27 Sep 2022 15:43:04,004 INFO : No group comparisons found.

27 Sep 2022 15:43:04,004 INFO : Calculating calibration curves

27 Sep 2022 15:43:04,004 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

27 Sep 2022 15:43:04,285 INFO : 68% Done

27 Sep 2022 15:43:04,288 INFO : Done calculating calibration curves.

27 Sep 2022 15:43:05,313 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 90

27 Sep 2022 15:43:06,316 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 90

27 Sep 2022 15:43:06,320 INFO : 69% Done

27 Sep 2022 15:43:07,363 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 90

27 Sep 2022 15:43:08,390 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 90

27 Sep 2022 15:43:09,402 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 90

27 Sep 2022 15:43:09,405 INFO : 70% Done

27 Sep 2022 15:43:10,409 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 90

27 Sep 2022 15:43:11,414 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 90

27 Sep 2022 15:43:12,431 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 90

27 Sep 2022 15:43:12,433 INFO : 71% Done

27 Sep 2022 15:43:13,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 90

27 Sep 2022 15:43:14,409 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 90

27 Sep 2022 15:43:15,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 90

27 Sep 2022 15:43:15,422 INFO : 72% Done

27 Sep 2022 15:43:16,405 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 90

27 Sep 2022 15:43:17,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 90

27 Sep 2022 15:43:18,402 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 90

27 Sep 2022 15:43:18,404 INFO : 73% Done

27 Sep 2022 15:43:19,377 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 90

27 Sep 2022 15:43:20,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 90

27 Sep 2022 15:43:21,382 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 90

27 Sep 2022 15:43:21,383 INFO : 74% Done

27 Sep 2022 15:43:22,355 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 90

27 Sep 2022 15:43:23,345 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 90

27 Sep 2022 15:43:24,336 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 90

27 Sep 2022 15:43:24,339 INFO : 75% Done

27 Sep 2022 15:43:25,285 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 90

27 Sep 2022 15:43:26,250 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 90

27 Sep 2022 15:43:27,263 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 90

27 Sep 2022 15:43:27,265 INFO : 76% Done

27 Sep 2022 15:43:28,215 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 90

27 Sep 2022 15:43:29,157 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 90

27 Sep 2022 15:43:30,152 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 90

27 Sep 2022 15:43:30,153 INFO : 77% Done

27 Sep 2022 15:43:31,129 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 90

27 Sep 2022 15:43:32,119 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 90

27 Sep 2022 15:43:33,095 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 90

27 Sep 2022 15:43:33,097 INFO : 78% Done

27 Sep 2022 15:43:34,051 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 90

27 Sep 2022 15:43:35,030 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 90

27 Sep 2022 15:43:36,023 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 90

27 Sep 2022 15:43:36,025 INFO : 79% Done

27 Sep 2022 15:43:37,005 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 90

27 Sep 2022 15:43:37,982 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 90

27 Sep 2022 15:43:39,002 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 90

27 Sep 2022 15:43:39,004 INFO : 80% Done

27 Sep 2022 15:43:39,961 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 90

27 Sep 2022 15:43:40,913 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 90

27 Sep 2022 15:43:41,925 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1_20220919185308.raw in QC folder. 38 of 90

27 Sep 2022 15:43:41,926 INFO : 81% Done

27 Sep 2022 15:43:42,896 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 39 of 90

27 Sep 2022 15:43:43,896 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 40 of 90

27 Sep 2022 15:43:44,882 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 41 of 90

27 Sep 2022 15:43:44,884 INFO : 82% Done

27 Sep 2022 15:43:45,850 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 42 of 90

27 Sep 2022 15:43:46,828 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 43 of 90

27 Sep 2022 15:43:47,818 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank1.raw in QC folder. 44 of 90

27 Sep 2022 15:43:47,820 INFO : 83% Done

27 Sep 2022 15:43:48,776 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 45 of 90

27 Sep 2022 15:43:49,760 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1.raw in QC folder. 46 of 90

27 Sep 2022 15:43:50,759 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 47 of 90

27 Sep 2022 15:43:50,760 INFO : 84% Done

27 Sep 2022 15:43:51,714 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 48 of 90

27 Sep 2022 15:43:52,670 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 49 of 90

27 Sep 2022 15:43:53,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 50 of 90

27 Sep 2022 15:43:53,679 INFO : 85% Done

27 Sep 2022 15:43:54,637 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 51 of 90

27 Sep 2022 15:43:55,636 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 52 of 90

27 Sep 2022 15:43:56,601 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 53 of 90

27 Sep 2022 15:43:56,603 INFO : 86% Done

27 Sep 2022 15:43:57,557 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 54 of 90

27 Sep 2022 15:43:58,543 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank2.raw in QC folder. 55 of 90

27 Sep 2022 15:43:59,527 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 56 of 90

27 Sep 2022 15:43:59,529 INFO : 87% Done

27 Sep 2022 15:44:00,481 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 57 of 90

27 Sep 2022 15:44:01,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 58 of 90

27 Sep 2022 15:44:02,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 59 of 90

27 Sep 2022 15:44:02,454 INFO : 88% Done

27 Sep 2022 15:44:03,416 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 60 of 90

27 Sep 2022 15:44:04,385 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank2.raw in QC folder. 61 of 90

27 Sep 2022 15:44:05,389 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 62 of 90

27 Sep 2022 15:44:05,391 INFO : 89% Done

27 Sep 2022 15:44:06,344 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 63 of 90

27 Sep 2022 15:44:07,297 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 64 of 90

27 Sep 2022 15:44:08,296 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 65 of 90

27 Sep 2022 15:44:08,297 INFO : 90% Done

27 Sep 2022 15:44:09,266 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 66 of 90

27 Sep 2022 15:44:10,268 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 67 of 90

27 Sep 2022 15:44:11,271 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 68 of 90

27 Sep 2022 15:44:11,273 INFO : 91% Done

27 Sep 2022 15:44:12,229 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 69 of 90

27 Sep 2022 15:44:13,207 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 70 of 90

27 Sep 2022 15:44:14,196 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 71 of 90

27 Sep 2022 15:44:14,197 INFO : 92% Done

27 Sep 2022 15:44:15,147 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 72 of 90

27 Sep 2022 15:44:16,112 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 73 of 90

27 Sep 2022 15:44:17,119 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 74 of 90

27 Sep 2022 15:44:17,121 INFO : 93% Done

27 Sep 2022 15:44:18,100 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 75 of 90

27 Sep 2022 15:44:19,077 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 76 of 90

27 Sep 2022 15:44:20,086 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 77 of 90

27 Sep 2022 15:44:20,088 INFO : 94% Done

27 Sep 2022 15:44:21,076 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 78 of 90

27 Sep 2022 15:44:22,081 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 79 of 90

27 Sep 2022 15:44:23,084 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 80 of 90

27 Sep 2022 15:44:23,086 INFO : 95% Done

27 Sep 2022 15:44:24,062 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 81 of 90

27 Sep 2022 15:44:25,061 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 82 of 90

27 Sep 2022 15:44:26,040 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 83 of 90

27 Sep 2022 15:44:26,042 INFO : 96% Done

27 Sep 2022 15:44:27,001 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 84 of 90

27 Sep 2022 15:44:27,988 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 85 of 90

27 Sep 2022 15:44:28,994 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 86 of 90

27 Sep 2022 15:44:28,995 INFO : 97% Done

27 Sep 2022 15:44:29,979 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 87 of 90

27 Sep 2022 15:44:30,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 88 of 90

27 Sep 2022 15:44:31,963 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 89 of 90

27 Sep 2022 15:44:31,965 INFO : 98% Done

27 Sep 2022 15:44:32,939 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 90 of 90

27 Sep 2022 15:44:32,939 INFO : Done updating previously imported sample file data.

27 Sep 2022 15:44:33,454 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-27-19.sky.zip have been updated with newer data.

27 Sep 2022 15:44:33,454 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-27-19.sky.zip

27 Sep 2022 15:44:33,454 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-27-19

27 Sep 2022 15:44:33,454 INFO : Creating and populating temp tables for Proportion values

27 Sep 2022 15:44:33,524 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Sep 2022 15:44:33,684 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Sep 2022 15:44:33,742 INFO : Cleaning up temp tables

27 Sep 2022 15:44:33,939 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-42-46.sky.zip

27 Sep 2022 15:44:33,941 INFO : 100% Done

27 Sep 2022 15:44:33,964 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'