27 Sep 2022 15:02:39,218 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Sep 2022 15:02:39,220 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-02-26.sky.zip

27 Sep 2022 15:02:39,220 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

27 Sep 2022 15:02:40,261 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

27 Sep 2022 15:02:40,362 INFO : 2% Done

27 Sep 2022 15:02:40,601 DEBUG: Starting to load chromatogram headers

27 Sep 2022 15:02:40,611 DEBUG: Done loading chromatogram headers

27 Sep 2022 15:02:41,007 INFO : Inserting Precursors_Mix_1

27 Sep 2022 15:02:41,016 INFO : 4% Done

27 Sep 2022 15:02:41,082 INFO : 7% Done

27 Sep 2022 15:02:41,146 INFO : 10% Done

27 Sep 2022 15:02:41,210 INFO : 12% Done

27 Sep 2022 15:02:41,274 INFO : 14% Done

27 Sep 2022 15:02:41,338 INFO : 17% Done

27 Sep 2022 15:02:41,400 INFO : 20% Done

27 Sep 2022 15:02:41,463 INFO : 22% Done

27 Sep 2022 15:02:41,528 INFO : 25% Done

27 Sep 2022 15:02:41,594 INFO : 27% Done

27 Sep 2022 15:02:41,661 INFO : 29% Done

27 Sep 2022 15:02:41,722 INFO : 32% Done

27 Sep 2022 15:02:41,788 INFO : 35% Done

27 Sep 2022 15:02:41,850 INFO : 37% Done

27 Sep 2022 15:02:41,910 INFO : 40% Done

27 Sep 2022 15:02:41,972 INFO : 43% Done

27 Sep 2022 15:02:42,037 INFO : 45% Done

27 Sep 2022 15:02:42,102 INFO : 47% Done

27 Sep 2022 15:02:42,168 INFO : 50% Done

27 Sep 2022 15:02:42,236 INFO : 53% Done

27 Sep 2022 15:02:42,301 INFO : 55% Done

27 Sep 2022 15:02:42,364 INFO : 58% Done

27 Sep 2022 15:02:42,431 INFO : 60% Done

27 Sep 2022 15:02:42,485 DEBUG: Total molecules inserted: 23

27 Sep 2022 15:02:42,486 INFO : Done parsing Skyline document.

27 Sep 2022 15:02:42,556 INFO : No group comparisons found.

27 Sep 2022 15:02:42,556 INFO : Calculating calibration curves

27 Sep 2022 15:02:42,557 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

27 Sep 2022 15:02:42,894 INFO : 68% Done

27 Sep 2022 15:02:42,899 INFO : Done calculating calibration curves.

27 Sep 2022 15:02:44,080 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 88

27 Sep 2022 15:02:45,073 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 88

27 Sep 2022 15:02:45,076 INFO : 69% Done

27 Sep 2022 15:02:46,052 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 88

27 Sep 2022 15:02:47,052 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 88

27 Sep 2022 15:02:47,054 INFO : 70% Done

27 Sep 2022 15:02:48,049 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 88

27 Sep 2022 15:02:49,056 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 88

27 Sep 2022 15:02:50,034 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 88

27 Sep 2022 15:02:51,080 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 88

27 Sep 2022 15:02:51,082 INFO : 71% Done

27 Sep 2022 15:02:52,060 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 88

27 Sep 2022 15:02:53,062 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 88

27 Sep 2022 15:02:54,039 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 88

27 Sep 2022 15:02:54,041 INFO : 72% Done

27 Sep 2022 15:02:55,002 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 88

27 Sep 2022 15:02:55,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 88

27 Sep 2022 15:02:56,002 INFO : 73% Done

27 Sep 2022 15:02:56,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 88

27 Sep 2022 15:02:57,992 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 88

27 Sep 2022 15:02:59,036 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 88

27 Sep 2022 15:03:00,011 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 88

27 Sep 2022 15:03:00,013 INFO : 74% Done

27 Sep 2022 15:03:00,995 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 88

27 Sep 2022 15:03:02,004 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 88

27 Sep 2022 15:03:02,005 INFO : 75% Done

27 Sep 2022 15:03:02,991 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 88

27 Sep 2022 15:03:03,962 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 88

27 Sep 2022 15:03:04,966 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 88

27 Sep 2022 15:03:04,968 INFO : 76% Done

27 Sep 2022 15:03:05,949 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 88

27 Sep 2022 15:03:06,948 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 88

27 Sep 2022 15:03:07,940 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 88

27 Sep 2022 15:03:08,900 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 88

27 Sep 2022 15:03:08,902 INFO : 77% Done

27 Sep 2022 15:03:09,893 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 88

27 Sep 2022 15:03:10,891 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 88

27 Sep 2022 15:03:10,893 INFO : 78% Done

27 Sep 2022 15:03:11,868 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 88

27 Sep 2022 15:03:12,850 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 88

27 Sep 2022 15:03:13,846 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 88

27 Sep 2022 15:03:13,847 INFO : 79% Done

27 Sep 2022 15:03:14,816 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 88

27 Sep 2022 15:03:15,780 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 88

27 Sep 2022 15:03:16,782 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 88

27 Sep 2022 15:03:16,784 INFO : 80% Done

27 Sep 2022 15:03:17,748 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 88

27 Sep 2022 15:03:18,701 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 88

27 Sep 2022 15:03:19,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 88

27 Sep 2022 15:03:19,707 INFO : 81% Done

27 Sep 2022 15:03:20,676 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1_20220919185308.raw in QC folder. 38 of 88

27 Sep 2022 15:03:21,671 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 39 of 88

27 Sep 2022 15:03:22,648 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 40 of 88

27 Sep 2022 15:03:22,649 INFO : 82% Done

27 Sep 2022 15:03:23,609 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 41 of 88

27 Sep 2022 15:03:24,586 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 42 of 88

27 Sep 2022 15:03:25,597 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 43 of 88

27 Sep 2022 15:03:25,598 INFO : 83% Done

27 Sep 2022 15:03:26,590 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank1.raw in QC folder. 44 of 88

27 Sep 2022 15:03:27,612 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 45 of 88

27 Sep 2022 15:03:28,654 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1.raw in QC folder. 46 of 88

27 Sep 2022 15:03:28,655 INFO : 84% Done

27 Sep 2022 15:03:29,641 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 47 of 88

27 Sep 2022 15:03:30,618 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 48 of 88

27 Sep 2022 15:03:30,620 INFO : 85% Done

27 Sep 2022 15:03:31,647 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 49 of 88

27 Sep 2022 15:03:32,641 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 50 of 88

27 Sep 2022 15:03:33,645 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 51 of 88

27 Sep 2022 15:03:34,615 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 52 of 88

27 Sep 2022 15:03:34,617 INFO : 86% Done

27 Sep 2022 15:03:35,575 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 53 of 88

27 Sep 2022 15:03:36,567 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 54 of 88

27 Sep 2022 15:03:37,552 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 55 of 88

27 Sep 2022 15:03:37,554 INFO : 87% Done

27 Sep 2022 15:03:38,525 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 56 of 88

27 Sep 2022 15:03:39,513 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 57 of 88

27 Sep 2022 15:03:39,514 INFO : 88% Done

27 Sep 2022 15:03:40,514 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 58 of 88

27 Sep 2022 15:03:41,510 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank2.raw in QC folder. 59 of 88

27 Sep 2022 15:03:42,523 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 60 of 88

27 Sep 2022 15:03:43,516 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 61 of 88

27 Sep 2022 15:03:43,518 INFO : 89% Done

27 Sep 2022 15:03:44,514 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 62 of 88

27 Sep 2022 15:03:45,539 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 63 of 88

27 Sep 2022 15:03:45,541 INFO : 90% Done

27 Sep 2022 15:03:46,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 64 of 88

27 Sep 2022 15:03:47,507 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 65 of 88

27 Sep 2022 15:03:48,515 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 66 of 88

27 Sep 2022 15:03:48,517 INFO : 91% Done

27 Sep 2022 15:03:49,490 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 67 of 88

27 Sep 2022 15:03:50,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 68 of 88

27 Sep 2022 15:03:51,481 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 69 of 88

27 Sep 2022 15:03:52,450 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 70 of 88

27 Sep 2022 15:03:52,452 INFO : 92% Done

27 Sep 2022 15:03:53,440 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 71 of 88

27 Sep 2022 15:03:54,430 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 72 of 88

27 Sep 2022 15:03:54,432 INFO : 93% Done

27 Sep 2022 15:03:55,394 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 73 of 88

27 Sep 2022 15:03:56,365 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 74 of 88

27 Sep 2022 15:03:57,367 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 75 of 88

27 Sep 2022 15:03:57,368 INFO : 94% Done

27 Sep 2022 15:03:58,347 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 76 of 88

27 Sep 2022 15:03:59,354 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 77 of 88

27 Sep 2022 15:04:00,367 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 78 of 88

27 Sep 2022 15:04:00,368 INFO : 95% Done

27 Sep 2022 15:04:01,333 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 79 of 88

27 Sep 2022 15:04:02,300 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 80 of 88

27 Sep 2022 15:04:03,308 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 81 of 88

27 Sep 2022 15:04:03,311 INFO : 96% Done

27 Sep 2022 15:04:04,296 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 82 of 88

27 Sep 2022 15:04:05,304 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 83 of 88

27 Sep 2022 15:04:06,284 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 84 of 88

27 Sep 2022 15:04:06,286 INFO : 97% Done

27 Sep 2022 15:04:07,244 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 85 of 88

27 Sep 2022 15:04:08,234 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 86 of 88

27 Sep 2022 15:04:09,224 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 87 of 88

27 Sep 2022 15:04:09,226 INFO : 98% Done

27 Sep 2022 15:04:10,235 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 88 of 88

27 Sep 2022 15:04:10,235 INFO : Done updating previously imported sample file data.

27 Sep 2022 15:04:10,777 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_17-37-30.sky.zip have been updated with newer data.

27 Sep 2022 15:04:10,777 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_17-37-30.sky.zip

27 Sep 2022 15:04:10,777 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_17-37-30

27 Sep 2022 15:04:10,777 INFO : Creating and populating temp tables for Proportion values

27 Sep 2022 15:04:10,841 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Sep 2022 15:04:11,232 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Sep 2022 15:04:11,291 INFO : Cleaning up temp tables

27 Sep 2022 15:04:11,483 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-02-26.sky.zip

27 Sep 2022 15:04:11,486 INFO : 100% Done

27 Sep 2022 15:04:11,512 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'