19 Sep 2022 17:33:51,315 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

19 Sep 2022 17:33:51,318 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_20-33-39.sky.zip

19 Sep 2022 17:33:51,318 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

19 Sep 2022 17:33:51,320 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

19 Sep 2022 17:33:52,287 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

19 Sep 2022 17:33:52,447 INFO : 2% Done

19 Sep 2022 17:33:52,716 DEBUG: Starting to load chromatogram headers

19 Sep 2022 17:33:52,727 DEBUG: Done loading chromatogram headers

19 Sep 2022 17:33:52,970 INFO : Inserting Precursors_Mix_1

19 Sep 2022 17:33:52,984 INFO : 4% Done

19 Sep 2022 17:33:53,082 INFO : 7% Done

19 Sep 2022 17:33:53,171 INFO : 10% Done

19 Sep 2022 17:33:53,242 INFO : 12% Done

19 Sep 2022 17:33:53,309 INFO : 14% Done

19 Sep 2022 17:33:53,375 INFO : 17% Done

19 Sep 2022 17:33:53,443 INFO : 19% Done

19 Sep 2022 17:33:53,508 INFO : 22% Done

19 Sep 2022 17:33:53,571 INFO : 25% Done

19 Sep 2022 17:33:53,639 INFO : 27% Done

19 Sep 2022 17:33:53,710 INFO : 29% Done

19 Sep 2022 17:33:53,776 INFO : 32% Done

19 Sep 2022 17:33:53,844 INFO : 35% Done

19 Sep 2022 17:33:53,910 INFO : 37% Done

19 Sep 2022 17:33:53,975 INFO : 40% Done

19 Sep 2022 17:33:54,045 INFO : 43% Done

19 Sep 2022 17:33:54,113 INFO : 45% Done

19 Sep 2022 17:33:54,181 INFO : 47% Done

19 Sep 2022 17:33:54,248 INFO : 50% Done

19 Sep 2022 17:33:54,366 INFO : 53% Done

19 Sep 2022 17:33:54,439 INFO : 55% Done

19 Sep 2022 17:33:54,514 INFO : 58% Done

19 Sep 2022 17:33:54,582 INFO : 60% Done

19 Sep 2022 17:33:54,641 DEBUG: Total molecules inserted: 23

19 Sep 2022 17:33:54,643 INFO : Done parsing Skyline document.

19 Sep 2022 17:33:54,702 INFO : No group comparisons found.

19 Sep 2022 17:33:54,702 INFO : Calculating calibration curves

19 Sep 2022 17:33:54,703 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

19 Sep 2022 17:33:55,018 INFO : 68% Done

19 Sep 2022 17:33:55,023 INFO : Done calculating calibration curves.

19 Sep 2022 17:33:56,051 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 82

19 Sep 2022 17:33:57,075 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 82

19 Sep 2022 17:33:57,078 INFO : 69% Done

19 Sep 2022 17:33:58,067 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 82

19 Sep 2022 17:33:59,092 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 82

19 Sep 2022 17:33:59,095 INFO : 70% Done

19 Sep 2022 17:34:00,082 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 82

19 Sep 2022 17:34:01,091 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 82

19 Sep 2022 17:34:02,106 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 82

19 Sep 2022 17:34:02,108 INFO : 71% Done

19 Sep 2022 17:34:03,114 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 82

19 Sep 2022 17:34:04,127 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 82

19 Sep 2022 17:34:05,137 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 82

19 Sep 2022 17:34:05,140 INFO : 72% Done

19 Sep 2022 17:34:06,128 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 82

19 Sep 2022 17:34:07,137 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 82

19 Sep 2022 17:34:07,138 INFO : 73% Done

19 Sep 2022 17:34:08,161 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 82

19 Sep 2022 17:34:09,160 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 82

19 Sep 2022 17:34:10,186 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 82

19 Sep 2022 17:34:11,193 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 82

19 Sep 2022 17:34:11,196 INFO : 74% Done

19 Sep 2022 17:34:12,201 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 82

19 Sep 2022 17:34:13,225 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 82

19 Sep 2022 17:34:13,227 INFO : 75% Done

19 Sep 2022 17:34:14,259 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 82

19 Sep 2022 17:34:15,316 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 82

19 Sep 2022 17:34:16,330 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 82

19 Sep 2022 17:34:16,333 INFO : 76% Done

19 Sep 2022 17:34:17,333 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 82

19 Sep 2022 17:34:18,358 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 82

19 Sep 2022 17:34:19,355 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 82

19 Sep 2022 17:34:19,357 INFO : 77% Done

19 Sep 2022 17:34:20,352 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 82

19 Sep 2022 17:34:21,411 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 82

19 Sep 2022 17:34:21,414 INFO : 78% Done

19 Sep 2022 17:34:22,520 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 82

19 Sep 2022 17:34:23,532 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 82

19 Sep 2022 17:34:24,524 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 82

19 Sep 2022 17:34:24,527 INFO : 79% Done

19 Sep 2022 17:34:25,511 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 82

19 Sep 2022 17:34:26,556 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 82

19 Sep 2022 17:34:27,606 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 82

19 Sep 2022 17:34:27,610 INFO : 80% Done

19 Sep 2022 17:34:28,590 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 82

19 Sep 2022 17:34:29,593 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 82

19 Sep 2022 17:34:30,634 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 82

19 Sep 2022 17:34:30,636 INFO : 81% Done

19 Sep 2022 17:34:31,612 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 82

19 Sep 2022 17:34:32,600 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 82

19 Sep 2022 17:34:32,602 INFO : 82% Done

19 Sep 2022 17:34:33,624 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 38 of 82

19 Sep 2022 17:34:34,632 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 39 of 82

19 Sep 2022 17:34:35,634 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 40 of 82

19 Sep 2022 17:34:35,636 INFO : 83% Done

19 Sep 2022 17:34:36,620 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 41 of 82

19 Sep 2022 17:34:37,613 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 42 of 82

19 Sep 2022 17:34:38,646 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 43 of 82

19 Sep 2022 17:34:38,650 INFO : 84% Done

19 Sep 2022 17:34:39,607 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 44 of 82

19 Sep 2022 17:34:40,577 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 45 of 82

19 Sep 2022 17:34:40,579 INFO : 85% Done

19 Sep 2022 17:34:41,565 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 46 of 82

19 Sep 2022 17:34:42,519 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 47 of 82

19 Sep 2022 17:34:43,517 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 48 of 82

19 Sep 2022 17:34:43,519 INFO : 86% Done

19 Sep 2022 17:34:44,514 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 49 of 82

19 Sep 2022 17:34:45,507 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 50 of 82

19 Sep 2022 17:34:46,500 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 51 of 82

19 Sep 2022 17:34:46,504 INFO : 87% Done

19 Sep 2022 17:34:47,478 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 52 of 82

19 Sep 2022 17:34:48,461 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 53 of 82

19 Sep 2022 17:34:48,463 INFO : 88% Done

19 Sep 2022 17:34:49,455 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 54 of 82

19 Sep 2022 17:34:50,488 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 55 of 82

19 Sep 2022 17:34:51,538 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 56 of 82

19 Sep 2022 17:34:52,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 57 of 82

19 Sep 2022 17:34:52,529 INFO : 89% Done

19 Sep 2022 17:34:53,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 58 of 82

19 Sep 2022 17:34:54,523 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 59 of 82

19 Sep 2022 17:34:54,525 INFO : 90% Done

19 Sep 2022 17:34:55,520 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 60 of 82

19 Sep 2022 17:34:56,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 61 of 82

19 Sep 2022 17:34:57,489 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 62 of 82

19 Sep 2022 17:34:57,490 INFO : 91% Done

19 Sep 2022 17:34:58,471 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 63 of 82

19 Sep 2022 17:34:59,468 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 64 of 82

19 Sep 2022 17:35:00,447 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 65 of 82

19 Sep 2022 17:35:00,449 INFO : 92% Done

19 Sep 2022 17:35:01,421 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 66 of 82

19 Sep 2022 17:35:02,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 67 of 82

19 Sep 2022 17:35:02,496 INFO : 93% Done

19 Sep 2022 17:35:03,611 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 68 of 82

19 Sep 2022 17:35:04,609 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 69 of 82

19 Sep 2022 17:35:05,620 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 70 of 82

19 Sep 2022 17:35:05,623 INFO : 94% Done

19 Sep 2022 17:35:06,602 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 71 of 82

19 Sep 2022 17:35:07,583 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 72 of 82

19 Sep 2022 17:35:08,591 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 73 of 82

19 Sep 2022 17:35:08,593 INFO : 95% Done

19 Sep 2022 17:35:09,560 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 74 of 82

19 Sep 2022 17:35:10,533 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 75 of 82

19 Sep 2022 17:35:11,538 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 76 of 82

19 Sep 2022 17:35:11,541 INFO : 96% Done

19 Sep 2022 17:35:12,512 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 77 of 82

19 Sep 2022 17:35:13,513 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 78 of 82

19 Sep 2022 17:35:13,515 INFO : 97% Done

19 Sep 2022 17:35:14,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 79 of 82

19 Sep 2022 17:35:15,534 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 80 of 82

19 Sep 2022 17:35:16,552 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 81 of 82

19 Sep 2022 17:35:16,554 INFO : 98% Done

19 Sep 2022 17:35:17,537 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 82 of 82

19 Sep 2022 17:35:17,537 INFO : Done updating previously imported sample file data.

19 Sep 2022 17:35:18,080 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-53-25.sky.zip have been updated with newer data.

19 Sep 2022 17:35:18,080 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-53-25.sky.zip

19 Sep 2022 17:35:18,080 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-53-25

19 Sep 2022 17:35:18,080 INFO : Creating and populating temp tables for Proportion values

19 Sep 2022 17:35:18,145 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Sep 2022 17:35:18,311 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Sep 2022 17:35:18,368 INFO : Cleaning up temp tables

19 Sep 2022 17:35:18,596 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_20-33-39.sky.zip

19 Sep 2022 17:35:18,599 INFO : 100% Done

19 Sep 2022 17:35:18,648 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'