19 Sep 2022 15:29:01,497 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

19 Sep 2022 15:29:01,499 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_18-28-49.sky.zip

19 Sep 2022 15:29:01,499 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

19 Sep 2022 15:29:01,500 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

19 Sep 2022 15:29:02,431 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

19 Sep 2022 15:29:02,457 INFO : 2% Done

19 Sep 2022 15:29:02,752 DEBUG: Starting to load chromatogram headers

19 Sep 2022 15:29:02,762 DEBUG: Done loading chromatogram headers

19 Sep 2022 15:29:03,122 INFO : Inserting Precursors_Mix_1

19 Sep 2022 15:29:03,132 INFO : 4% Done

19 Sep 2022 15:29:03,195 INFO : 7% Done

19 Sep 2022 15:29:03,254 INFO : 10% Done

19 Sep 2022 15:29:03,310 INFO : 12% Done

19 Sep 2022 15:29:03,368 INFO : 14% Done

19 Sep 2022 15:29:03,426 INFO : 17% Done

19 Sep 2022 15:29:03,485 INFO : 19% Done

19 Sep 2022 15:29:03,546 INFO : 22% Done

19 Sep 2022 15:29:03,603 INFO : 25% Done

19 Sep 2022 15:29:03,662 INFO : 27% Done

19 Sep 2022 15:29:03,720 INFO : 29% Done

19 Sep 2022 15:29:03,775 INFO : 32% Done

19 Sep 2022 15:29:03,837 INFO : 35% Done

19 Sep 2022 15:29:03,905 INFO : 37% Done

19 Sep 2022 15:29:03,959 INFO : 40% Done

19 Sep 2022 15:29:04,016 INFO : 43% Done

19 Sep 2022 15:29:04,075 INFO : 45% Done

19 Sep 2022 15:29:04,134 INFO : 47% Done

19 Sep 2022 15:29:04,190 INFO : 50% Done

19 Sep 2022 15:29:04,249 INFO : 53% Done

19 Sep 2022 15:29:04,307 INFO : 55% Done

19 Sep 2022 15:29:04,365 INFO : 58% Done

19 Sep 2022 15:29:04,427 INFO : 60% Done

19 Sep 2022 15:29:04,476 DEBUG: Total molecules inserted: 23

19 Sep 2022 15:29:04,477 INFO : Done parsing Skyline document.

19 Sep 2022 15:29:04,531 INFO : No group comparisons found.

19 Sep 2022 15:29:04,531 INFO : Calculating calibration curves

19 Sep 2022 15:29:04,532 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

19 Sep 2022 15:29:04,777 INFO : 68% Done

19 Sep 2022 15:29:04,784 INFO : Done calculating calibration curves.

19 Sep 2022 15:29:05,746 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 79

19 Sep 2022 15:29:06,720 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 79

19 Sep 2022 15:29:06,724 INFO : 69% Done

19 Sep 2022 15:29:07,672 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 79

19 Sep 2022 15:29:08,625 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 79

19 Sep 2022 15:29:08,628 INFO : 70% Done

19 Sep 2022 15:29:09,588 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 5 of 79

19 Sep 2022 15:29:10,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 79

19 Sep 2022 15:29:11,501 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 79

19 Sep 2022 15:29:11,503 INFO : 71% Done

19 Sep 2022 15:29:12,441 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 8 of 79

19 Sep 2022 15:29:13,376 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 9 of 79

19 Sep 2022 15:29:14,379 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 10 of 79

19 Sep 2022 15:29:14,381 INFO : 72% Done

19 Sep 2022 15:29:15,358 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 11 of 79

19 Sep 2022 15:29:16,314 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 12 of 79

19 Sep 2022 15:29:16,315 INFO : 73% Done

19 Sep 2022 15:29:17,282 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 13 of 79

19 Sep 2022 15:29:18,272 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 14 of 79

19 Sep 2022 15:29:19,237 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 15 of 79

19 Sep 2022 15:29:19,239 INFO : 74% Done

19 Sep 2022 15:29:20,160 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 16 of 79

19 Sep 2022 15:29:21,088 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 17 of 79

19 Sep 2022 15:29:21,089 INFO : 75% Done

19 Sep 2022 15:29:22,071 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 18 of 79

19 Sep 2022 15:29:23,016 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 19 of 79

19 Sep 2022 15:29:23,991 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 20 of 79

19 Sep 2022 15:29:23,993 INFO : 76% Done

19 Sep 2022 15:29:24,956 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 21 of 79

19 Sep 2022 15:29:25,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 22 of 79

19 Sep 2022 15:29:26,933 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 23 of 79

19 Sep 2022 15:29:26,934 INFO : 77% Done

19 Sep 2022 15:29:27,857 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 24 of 79

19 Sep 2022 15:29:28,789 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 25 of 79

19 Sep 2022 15:29:28,791 INFO : 78% Done

19 Sep 2022 15:29:29,765 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 26 of 79

19 Sep 2022 15:29:30,685 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 27 of 79

19 Sep 2022 15:29:31,663 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 28 of 79

19 Sep 2022 15:29:31,665 INFO : 79% Done

19 Sep 2022 15:29:32,614 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 29 of 79

19 Sep 2022 15:29:33,580 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 30 of 79

19 Sep 2022 15:29:34,541 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 31 of 79

19 Sep 2022 15:29:34,543 INFO : 80% Done

19 Sep 2022 15:29:35,497 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 32 of 79

19 Sep 2022 15:29:36,467 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 33 of 79

19 Sep 2022 15:29:36,469 INFO : 81% Done

19 Sep 2022 15:29:37,459 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 34 of 79

19 Sep 2022 15:29:38,449 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 35 of 79

19 Sep 2022 15:29:39,494 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 36 of 79

19 Sep 2022 15:29:39,496 INFO : 82% Done

19 Sep 2022 15:29:40,440 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 37 of 79

19 Sep 2022 15:29:41,422 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 38 of 79

19 Sep 2022 15:29:42,406 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 39 of 79

19 Sep 2022 15:29:42,408 INFO : 83% Done

19 Sep 2022 15:29:43,367 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 40 of 79

19 Sep 2022 15:29:44,350 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 41 of 79

19 Sep 2022 15:29:44,352 INFO : 84% Done

19 Sep 2022 15:29:45,325 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 42 of 79

19 Sep 2022 15:29:46,308 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 43 of 79

19 Sep 2022 15:29:47,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 44 of 79

19 Sep 2022 15:29:47,292 INFO : 85% Done

19 Sep 2022 15:29:48,264 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 45 of 79

19 Sep 2022 15:29:49,240 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 46 of 79

19 Sep 2022 15:29:50,305 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 47 of 79

19 Sep 2022 15:29:50,308 INFO : 86% Done

19 Sep 2022 15:29:51,280 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 48 of 79

19 Sep 2022 15:29:52,228 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 49 of 79

19 Sep 2022 15:29:52,230 INFO : 87% Done

19 Sep 2022 15:29:53,224 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 50 of 79

19 Sep 2022 15:29:54,198 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 51 of 79

19 Sep 2022 15:29:54,228 INFO : 88% Done

19 Sep 2022 15:29:55,237 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 52 of 79

19 Sep 2022 15:29:56,215 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 53 of 79

19 Sep 2022 15:29:57,212 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 54 of 79

19 Sep 2022 15:29:58,205 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 55 of 79

19 Sep 2022 15:29:58,206 INFO : 89% Done

19 Sep 2022 15:29:59,189 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 56 of 79

19 Sep 2022 15:30:00,208 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 57 of 79

19 Sep 2022 15:30:00,209 INFO : 90% Done

19 Sep 2022 15:30:01,200 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 58 of 79

19 Sep 2022 15:30:02,186 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 59 of 79

19 Sep 2022 15:30:02,188 INFO : 91% Done

19 Sep 2022 15:30:03,278 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 60 of 79

19 Sep 2022 15:30:04,232 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 61 of 79

19 Sep 2022 15:30:05,221 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 62 of 79

19 Sep 2022 15:30:06,176 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 63 of 79

19 Sep 2022 15:30:06,178 INFO : 92% Done

19 Sep 2022 15:30:07,130 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 64 of 79

19 Sep 2022 15:30:08,104 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 65 of 79

19 Sep 2022 15:30:08,106 INFO : 93% Done

19 Sep 2022 15:30:09,072 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 66 of 79

19 Sep 2022 15:30:10,039 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 67 of 79

19 Sep 2022 15:30:10,041 INFO : 94% Done

19 Sep 2022 15:30:11,033 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 68 of 79

19 Sep 2022 15:30:11,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 69 of 79

19 Sep 2022 15:30:12,993 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 70 of 79

19 Sep 2022 15:30:13,010 INFO : 95% Done

19 Sep 2022 15:30:13,982 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 71 of 79

19 Sep 2022 15:30:14,979 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 72 of 79

19 Sep 2022 15:30:15,978 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 73 of 79

19 Sep 2022 15:30:15,980 INFO : 96% Done

19 Sep 2022 15:30:16,944 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 74 of 79

19 Sep 2022 15:30:17,931 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 75 of 79

19 Sep 2022 15:30:17,933 INFO : 97% Done

19 Sep 2022 15:30:18,903 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 76 of 79

19 Sep 2022 15:30:19,879 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 77 of 79

19 Sep 2022 15:30:20,873 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 78 of 79

19 Sep 2022 15:30:20,875 INFO : 98% Done

19 Sep 2022 15:30:21,842 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 79 of 79

19 Sep 2022 15:30:21,842 INFO : Done updating previously imported sample file data.

19 Sep 2022 15:30:22,385 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_17-07-01.sky.zip have been updated with newer data.

19 Sep 2022 15:30:22,385 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_17-07-01.sky.zip

19 Sep 2022 15:30:22,385 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_17-07-01

19 Sep 2022 15:30:22,385 INFO : Creating and populating temp tables for Proportion values

19 Sep 2022 15:30:22,448 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Sep 2022 15:30:22,592 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Sep 2022 15:30:22,645 INFO : Cleaning up temp tables

19 Sep 2022 15:30:22,873 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_18-28-49.sky.zip

19 Sep 2022 15:30:22,876 INFO : 100% Done

19 Sep 2022 15:30:22,924 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'