28 Jul 2022 14:07:13,499 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

28 Jul 2022 14:07:13,500 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_17-07-01.sky.zip

28 Jul 2022 14:07:13,501 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

28 Jul 2022 14:07:13,502 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

28 Jul 2022 14:07:14,434 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

28 Jul 2022 14:07:14,524 WARN : The version of this Skyline document is 22.12. This is newer than the highest supported version 20.22

28 Jul 2022 14:07:14,532 INFO : 2% Done

28 Jul 2022 14:07:14,769 DEBUG: Starting to load chromatogram headers

28 Jul 2022 14:07:14,778 DEBUG: Done loading chromatogram headers

28 Jul 2022 14:07:15,143 INFO : Inserting Precursors_Mix_1

28 Jul 2022 14:07:15,151 INFO : 4% Done

28 Jul 2022 14:07:15,211 INFO : 7% Done

28 Jul 2022 14:07:15,270 INFO : 10% Done

28 Jul 2022 14:07:15,325 INFO : 12% Done

28 Jul 2022 14:07:15,383 INFO : 14% Done

28 Jul 2022 14:07:15,441 INFO : 17% Done

28 Jul 2022 14:07:15,498 INFO : 19% Done

28 Jul 2022 14:07:15,556 INFO : 22% Done

28 Jul 2022 14:07:15,612 INFO : 25% Done

28 Jul 2022 14:07:15,670 INFO : 27% Done

28 Jul 2022 14:07:15,728 INFO : 29% Done

28 Jul 2022 14:07:15,787 INFO : 32% Done

28 Jul 2022 14:07:15,854 INFO : 35% Done

28 Jul 2022 14:07:15,914 INFO : 37% Done

28 Jul 2022 14:07:15,971 INFO : 40% Done

28 Jul 2022 14:07:16,031 INFO : 43% Done

28 Jul 2022 14:07:16,090 INFO : 45% Done

28 Jul 2022 14:07:16,149 INFO : 47% Done

28 Jul 2022 14:07:16,207 INFO : 50% Done

28 Jul 2022 14:07:16,267 INFO : 53% Done

28 Jul 2022 14:07:16,326 INFO : 55% Done

28 Jul 2022 14:07:16,389 INFO : 58% Done

28 Jul 2022 14:07:16,454 INFO : 60% Done

28 Jul 2022 14:07:16,503 DEBUG: Total molecules inserted: 23

28 Jul 2022 14:07:16,504 INFO : Done parsing Skyline document.

28 Jul 2022 14:07:16,559 INFO : No group comparisons found.

28 Jul 2022 14:07:16,559 INFO : Calculating calibration curves

28 Jul 2022 14:07:16,560 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

28 Jul 2022 14:07:16,831 INFO : 68% Done

28 Jul 2022 14:07:16,835 INFO : Done calculating calibration curves.

28 Jul 2022 14:07:17,790 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 81

28 Jul 2022 14:07:18,793 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 81

28 Jul 2022 14:07:18,798 INFO : 69% Done

28 Jul 2022 14:07:19,778 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 81

28 Jul 2022 14:07:20,764 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 81

28 Jul 2022 14:07:20,767 INFO : 70% Done

28 Jul 2022 14:07:21,743 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 81

28 Jul 2022 14:07:22,736 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 81

28 Jul 2022 14:07:23,723 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 81

28 Jul 2022 14:07:23,725 INFO : 71% Done

28 Jul 2022 14:07:24,723 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 81

28 Jul 2022 14:07:25,708 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 81

28 Jul 2022 14:07:26,694 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 81

28 Jul 2022 14:07:26,696 INFO : 72% Done

28 Jul 2022 14:07:27,659 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 81

28 Jul 2022 14:07:28,631 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 81

28 Jul 2022 14:07:28,647 INFO : 73% Done

28 Jul 2022 14:07:29,644 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 81

28 Jul 2022 14:07:30,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 81

28 Jul 2022 14:07:31,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 81

28 Jul 2022 14:07:31,637 INFO : 74% Done

28 Jul 2022 14:07:32,607 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 81

28 Jul 2022 14:07:33,602 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 81

28 Jul 2022 14:07:34,595 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 81

28 Jul 2022 14:07:34,598 INFO : 75% Done

28 Jul 2022 14:07:35,576 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 81

28 Jul 2022 14:07:36,568 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 81

28 Jul 2022 14:07:36,570 INFO : 76% Done

28 Jul 2022 14:07:37,554 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 81

28 Jul 2022 14:07:38,554 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 81

28 Jul 2022 14:07:39,622 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 81

28 Jul 2022 14:07:40,622 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 81

28 Jul 2022 14:07:40,624 INFO : 77% Done

28 Jul 2022 14:07:41,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 81

28 Jul 2022 14:07:42,667 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 81

28 Jul 2022 14:07:42,668 INFO : 78% Done

28 Jul 2022 14:07:43,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 81

28 Jul 2022 14:07:44,610 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 81

28 Jul 2022 14:07:44,612 INFO : 79% Done

28 Jul 2022 14:07:45,618 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 81

28 Jul 2022 14:07:46,581 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 81

28 Jul 2022 14:07:47,578 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 81

28 Jul 2022 14:07:48,523 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 81

28 Jul 2022 14:07:48,525 INFO : 80% Done

28 Jul 2022 14:07:49,495 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 81

28 Jul 2022 14:07:50,471 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 81

28 Jul 2022 14:07:50,473 INFO : 81% Done

28 Jul 2022 14:07:51,436 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 81

28 Jul 2022 14:07:52,400 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 81

28 Jul 2022 14:07:53,391 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 81

28 Jul 2022 14:07:53,393 INFO : 82% Done

28 Jul 2022 14:07:54,335 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 38 of 81

28 Jul 2022 14:07:55,338 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 39 of 81

28 Jul 2022 14:07:56,415 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 40 of 81

28 Jul 2022 14:07:56,417 INFO : 83% Done

28 Jul 2022 14:07:57,391 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 41 of 81

28 Jul 2022 14:07:58,380 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 42 of 81

28 Jul 2022 14:07:58,382 INFO : 84% Done

28 Jul 2022 14:07:59,377 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 43 of 81

28 Jul 2022 14:08:00,358 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 44 of 81

28 Jul 2022 14:08:01,394 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 45 of 81

28 Jul 2022 14:08:01,397 INFO : 85% Done

28 Jul 2022 14:08:02,391 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 46 of 81

28 Jul 2022 14:08:03,387 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 47 of 81

28 Jul 2022 14:08:04,364 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 48 of 81

28 Jul 2022 14:08:04,367 INFO : 86% Done

28 Jul 2022 14:08:05,292 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 49 of 81

28 Jul 2022 14:08:06,237 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 50 of 81

28 Jul 2022 14:08:06,240 INFO : 87% Done

28 Jul 2022 14:08:07,218 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 51 of 81

28 Jul 2022 14:08:08,150 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 52 of 81

28 Jul 2022 14:08:09,141 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 53 of 81

28 Jul 2022 14:08:09,143 INFO : 88% Done

28 Jul 2022 14:08:10,074 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 54 of 81

28 Jul 2022 14:08:11,004 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 55 of 81

28 Jul 2022 14:08:11,977 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 56 of 81

28 Jul 2022 14:08:11,980 INFO : 89% Done

28 Jul 2022 14:08:12,926 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 57 of 81

28 Jul 2022 14:08:13,898 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 58 of 81

28 Jul 2022 14:08:13,900 INFO : 90% Done

28 Jul 2022 14:08:14,856 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 59 of 81

28 Jul 2022 14:08:15,796 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 60 of 81

28 Jul 2022 14:08:16,779 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 61 of 81

28 Jul 2022 14:08:16,781 INFO : 91% Done

28 Jul 2022 14:08:17,711 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 62 of 81

28 Jul 2022 14:08:18,679 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 63 of 81

28 Jul 2022 14:08:19,666 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 64 of 81

28 Jul 2022 14:08:19,668 INFO : 92% Done

28 Jul 2022 14:08:20,610 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 65 of 81

28 Jul 2022 14:08:21,584 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 66 of 81

28 Jul 2022 14:08:22,524 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 67 of 81

28 Jul 2022 14:08:22,526 INFO : 93% Done

28 Jul 2022 14:08:23,464 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 68 of 81

28 Jul 2022 14:08:24,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 69 of 81

28 Jul 2022 14:08:24,423 INFO : 94% Done

28 Jul 2022 14:08:25,391 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 70 of 81

28 Jul 2022 14:08:26,333 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 71 of 81

28 Jul 2022 14:08:27,311 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 72 of 81

28 Jul 2022 14:08:27,314 INFO : 95% Done

28 Jul 2022 14:08:28,242 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 73 of 81

28 Jul 2022 14:08:29,173 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 74 of 81

28 Jul 2022 14:08:30,159 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 75 of 81

28 Jul 2022 14:08:30,161 INFO : 96% Done

28 Jul 2022 14:08:31,091 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 76 of 81

28 Jul 2022 14:08:32,059 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 77 of 81

28 Jul 2022 14:08:32,061 INFO : 97% Done

28 Jul 2022 14:08:33,007 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 78 of 81

28 Jul 2022 14:08:33,972 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 79 of 81

28 Jul 2022 14:08:34,927 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 80 of 81

28 Jul 2022 14:08:34,930 INFO : 98% Done

28 Jul 2022 14:08:35,849 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 81 of 81

28 Jul 2022 14:08:35,849 INFO : Done updating previously imported sample file data.

28 Jul 2022 14:08:36,344 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-51-44.sky.zip have been updated with newer data.

28 Jul 2022 14:08:36,344 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-51-44.sky.zip

28 Jul 2022 14:08:36,344 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-51-44

28 Jul 2022 14:08:36,344 INFO : Creating and populating temp tables for Proportion values

28 Jul 2022 14:08:36,398 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

28 Jul 2022 14:08:36,532 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

28 Jul 2022 14:08:36,581 INFO : Cleaning up temp tables

28 Jul 2022 14:08:36,792 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_17-07-01.sky.zip

28 Jul 2022 14:08:36,795 INFO : 100% Done

28 Jul 2022 14:08:36,818 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'