28 Jul 2022 13:51:57,640 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

28 Jul 2022 13:51:57,642 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-51-44.sky.zip

28 Jul 2022 13:51:57,642 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

28 Jul 2022 13:51:57,644 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

28 Jul 2022 13:51:58,579 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

28 Jul 2022 13:51:58,589 WARN : The version of this Skyline document is 22.12. This is newer than the highest supported version 20.22

28 Jul 2022 13:51:58,602 INFO : 2% Done

28 Jul 2022 13:51:58,857 DEBUG: Starting to load chromatogram headers

28 Jul 2022 13:51:58,867 DEBUG: Done loading chromatogram headers

28 Jul 2022 13:51:59,239 INFO : Inserting Precursors_Mix_1

28 Jul 2022 13:51:59,249 INFO : 4% Done

28 Jul 2022 13:51:59,318 INFO : 7% Done

28 Jul 2022 13:51:59,378 INFO : 10% Done

28 Jul 2022 13:51:59,436 INFO : 12% Done

28 Jul 2022 13:51:59,497 INFO : 14% Done

28 Jul 2022 13:51:59,557 INFO : 17% Done

28 Jul 2022 13:51:59,615 INFO : 20% Done

28 Jul 2022 13:51:59,676 INFO : 22% Done

28 Jul 2022 13:51:59,734 INFO : 25% Done

28 Jul 2022 13:51:59,793 INFO : 27% Done

28 Jul 2022 13:51:59,853 INFO : 29% Done

28 Jul 2022 13:51:59,918 INFO : 32% Done

28 Jul 2022 13:51:59,981 INFO : 35% Done

28 Jul 2022 13:52:00,059 INFO : 37% Done

28 Jul 2022 13:52:00,122 INFO : 40% Done

28 Jul 2022 13:52:00,198 INFO : 43% Done

28 Jul 2022 13:52:00,280 INFO : 45% Done

28 Jul 2022 13:52:00,367 INFO : 47% Done

28 Jul 2022 13:52:00,454 INFO : 50% Done

28 Jul 2022 13:52:00,529 INFO : 53% Done

28 Jul 2022 13:52:00,594 INFO : 55% Done

28 Jul 2022 13:52:00,653 INFO : 58% Done

28 Jul 2022 13:52:00,714 INFO : 60% Done

28 Jul 2022 13:52:00,784 DEBUG: Total molecules inserted: 23

28 Jul 2022 13:52:00,785 INFO : Done parsing Skyline document.

28 Jul 2022 13:52:00,860 INFO : No group comparisons found.

28 Jul 2022 13:52:00,860 INFO : Calculating calibration curves

28 Jul 2022 13:52:00,860 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

28 Jul 2022 13:52:01,167 INFO : 68% Done

28 Jul 2022 13:52:01,172 INFO : Done calculating calibration curves.

28 Jul 2022 13:52:02,317 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 80

28 Jul 2022 13:52:03,287 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 80

28 Jul 2022 13:52:03,291 INFO : 69% Done

28 Jul 2022 13:52:04,226 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 80

28 Jul 2022 13:52:05,198 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 80

28 Jul 2022 13:52:05,200 INFO : 70% Done

28 Jul 2022 13:52:06,128 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 80

28 Jul 2022 13:52:07,088 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 80

28 Jul 2022 13:52:08,030 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 80

28 Jul 2022 13:52:08,032 INFO : 71% Done

28 Jul 2022 13:52:08,971 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 8 of 80

28 Jul 2022 13:52:09,921 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 9 of 80

28 Jul 2022 13:52:10,878 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 10 of 80

28 Jul 2022 13:52:10,880 INFO : 72% Done

28 Jul 2022 13:52:11,840 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 11 of 80

28 Jul 2022 13:52:12,826 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 12 of 80

28 Jul 2022 13:52:12,829 INFO : 73% Done

28 Jul 2022 13:52:13,823 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 13 of 80

28 Jul 2022 13:52:14,761 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 14 of 80

28 Jul 2022 13:52:15,737 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 15 of 80

28 Jul 2022 13:52:15,739 INFO : 74% Done

28 Jul 2022 13:52:16,679 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 16 of 80

28 Jul 2022 13:52:17,669 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 17 of 80

28 Jul 2022 13:52:18,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 18 of 80

28 Jul 2022 13:52:18,680 INFO : 75% Done

28 Jul 2022 13:52:19,641 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 19 of 80

28 Jul 2022 13:52:20,619 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 20 of 80

28 Jul 2022 13:52:20,621 INFO : 76% Done

28 Jul 2022 13:52:21,623 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 21 of 80

28 Jul 2022 13:52:22,617 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 22 of 80

28 Jul 2022 13:52:23,596 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 23 of 80

28 Jul 2022 13:52:23,598 INFO : 77% Done

28 Jul 2022 13:52:24,560 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 24 of 80

28 Jul 2022 13:52:25,494 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 25 of 80

28 Jul 2022 13:52:26,480 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 26 of 80

28 Jul 2022 13:52:26,482 INFO : 78% Done

28 Jul 2022 13:52:27,426 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 27 of 80

28 Jul 2022 13:52:28,412 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 28 of 80

28 Jul 2022 13:52:28,414 INFO : 79% Done

28 Jul 2022 13:52:29,413 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 29 of 80

28 Jul 2022 13:52:30,391 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 30 of 80

28 Jul 2022 13:52:31,355 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 31 of 80

28 Jul 2022 13:52:31,357 INFO : 80% Done

28 Jul 2022 13:52:32,310 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 32 of 80

28 Jul 2022 13:52:33,292 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 33 of 80

28 Jul 2022 13:52:34,262 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 34 of 80

28 Jul 2022 13:52:34,264 INFO : 81% Done

28 Jul 2022 13:52:35,222 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 35 of 80

28 Jul 2022 13:52:36,177 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 36 of 80

28 Jul 2022 13:52:36,180 INFO : 82% Done

28 Jul 2022 13:52:37,164 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 37 of 80

28 Jul 2022 13:52:38,117 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 38 of 80

28 Jul 2022 13:52:39,102 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 39 of 80

28 Jul 2022 13:52:39,104 INFO : 83% Done

28 Jul 2022 13:52:40,060 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 40 of 80

28 Jul 2022 13:52:41,037 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 41 of 80

28 Jul 2022 13:52:42,010 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 42 of 80

28 Jul 2022 13:52:42,012 INFO : 84% Done

28 Jul 2022 13:52:42,969 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 43 of 80

28 Jul 2022 13:52:43,945 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 44 of 80

28 Jul 2022 13:52:43,947 INFO : 85% Done

28 Jul 2022 13:52:44,927 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 45 of 80

28 Jul 2022 13:52:45,895 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 46 of 80

28 Jul 2022 13:52:46,887 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 47 of 80

28 Jul 2022 13:52:46,889 INFO : 86% Done

28 Jul 2022 13:52:47,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 48 of 80

28 Jul 2022 13:52:48,804 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 49 of 80

28 Jul 2022 13:52:49,796 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 50 of 80

28 Jul 2022 13:52:49,798 INFO : 87% Done

28 Jul 2022 13:52:50,758 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 51 of 80

28 Jul 2022 13:52:51,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 52 of 80

28 Jul 2022 13:52:51,781 INFO : 88% Done

28 Jul 2022 13:52:52,756 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 53 of 80

28 Jul 2022 13:52:53,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 54 of 80

28 Jul 2022 13:52:54,712 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 55 of 80

28 Jul 2022 13:52:54,714 INFO : 89% Done

28 Jul 2022 13:52:55,671 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 56 of 80

28 Jul 2022 13:52:56,631 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 57 of 80

28 Jul 2022 13:52:57,612 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 58 of 80

28 Jul 2022 13:52:57,614 INFO : 90% Done

28 Jul 2022 13:52:58,568 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 59 of 80

28 Jul 2022 13:52:59,507 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 60 of 80

28 Jul 2022 13:52:59,510 INFO : 91% Done

28 Jul 2022 13:53:00,496 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 61 of 80

28 Jul 2022 13:53:01,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 62 of 80

28 Jul 2022 13:53:02,424 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 63 of 80

28 Jul 2022 13:53:02,426 INFO : 92% Done

28 Jul 2022 13:53:03,399 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 64 of 80

28 Jul 2022 13:53:04,372 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 65 of 80

28 Jul 2022 13:53:05,344 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 66 of 80

28 Jul 2022 13:53:05,346 INFO : 93% Done

28 Jul 2022 13:53:06,306 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 67 of 80

28 Jul 2022 13:53:07,273 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 68 of 80

28 Jul 2022 13:53:07,276 INFO : 94% Done

28 Jul 2022 13:53:08,259 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 69 of 80

28 Jul 2022 13:53:09,221 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 70 of 80

28 Jul 2022 13:53:10,208 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 71 of 80

28 Jul 2022 13:53:10,211 INFO : 95% Done

28 Jul 2022 13:53:11,172 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 72 of 80

28 Jul 2022 13:53:12,153 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 73 of 80

28 Jul 2022 13:53:13,120 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 74 of 80

28 Jul 2022 13:53:13,123 INFO : 96% Done

28 Jul 2022 13:53:14,081 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 75 of 80

28 Jul 2022 13:53:15,054 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 76 of 80

28 Jul 2022 13:53:15,056 INFO : 97% Done

28 Jul 2022 13:53:16,032 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 77 of 80

28 Jul 2022 13:53:16,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 78 of 80

28 Jul 2022 13:53:17,982 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 79 of 80

28 Jul 2022 13:53:17,985 INFO : 98% Done

28 Jul 2022 13:53:18,938 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 80 of 80

28 Jul 2022 13:53:18,938 INFO : Done updating previously imported sample file data.

28 Jul 2022 13:53:19,491 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-26-52.sky.zip have been updated with newer data.

28 Jul 2022 13:53:19,491 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-26-52.sky.zip

28 Jul 2022 13:53:19,491 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-26-52

28 Jul 2022 13:53:19,491 INFO : Creating and populating temp tables for Proportion values

28 Jul 2022 13:53:19,550 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

28 Jul 2022 13:53:19,693 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

28 Jul 2022 13:53:19,744 INFO : Cleaning up temp tables

28 Jul 2022 13:53:20,003 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-51-44.sky.zip

28 Jul 2022 13:53:20,006 INFO : 100% Done

28 Jul 2022 13:53:20,034 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'