28 Jul 2022 11:22:32,620 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

28 Jul 2022 11:22:32,622 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_14-22-21.sky.zip

28 Jul 2022 11:22:32,622 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

28 Jul 2022 11:22:32,624 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

28 Jul 2022 11:22:33,421 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

28 Jul 2022 11:22:33,431 WARN : The version of this Skyline document is 22.12. This is newer than the highest supported version 20.22

28 Jul 2022 11:22:33,440 INFO : 2% Done

28 Jul 2022 11:22:33,719 DEBUG: Starting to load chromatogram headers

28 Jul 2022 11:22:33,728 DEBUG: Done loading chromatogram headers

28 Jul 2022 11:22:33,938 INFO : Inserting Precursors_Mix_1

28 Jul 2022 11:22:33,948 INFO : 4% Done

28 Jul 2022 11:22:34,020 INFO : 7% Done

28 Jul 2022 11:22:34,096 INFO : 10% Done

28 Jul 2022 11:22:34,161 INFO : 12% Done

28 Jul 2022 11:22:34,225 INFO : 14% Done

28 Jul 2022 11:22:34,278 INFO : 17% Done

28 Jul 2022 11:22:34,331 INFO : 20% Done

28 Jul 2022 11:22:34,384 INFO : 22% Done

28 Jul 2022 11:22:34,436 INFO : 25% Done

28 Jul 2022 11:22:34,490 INFO : 27% Done

28 Jul 2022 11:22:34,545 INFO : 30% Done

28 Jul 2022 11:22:34,598 INFO : 32% Done

28 Jul 2022 11:22:34,651 INFO : 35% Done

28 Jul 2022 11:22:34,708 INFO : 37% Done

28 Jul 2022 11:22:34,760 INFO : 40% Done

28 Jul 2022 11:22:34,812 INFO : 43% Done

28 Jul 2022 11:22:34,868 INFO : 45% Done

28 Jul 2022 11:22:34,928 INFO : 47% Done

28 Jul 2022 11:22:34,989 INFO : 50% Done

28 Jul 2022 11:22:35,064 INFO : 53% Done

28 Jul 2022 11:22:35,121 INFO : 55% Done

28 Jul 2022 11:22:35,175 INFO : 58% Done

28 Jul 2022 11:22:35,233 INFO : 60% Done

28 Jul 2022 11:22:35,281 DEBUG: Total molecules inserted: 23

28 Jul 2022 11:22:35,284 INFO : Done parsing Skyline document.

28 Jul 2022 11:22:35,341 INFO : No group comparisons found.

28 Jul 2022 11:22:35,342 INFO : Calculating calibration curves

28 Jul 2022 11:22:35,342 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

28 Jul 2022 11:22:35,616 INFO : 68% Done

28 Jul 2022 11:22:35,621 INFO : Done calculating calibration curves.

28 Jul 2022 11:22:36,606 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 71

28 Jul 2022 11:22:37,580 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 71

28 Jul 2022 11:22:37,583 INFO : 69% Done

28 Jul 2022 11:22:38,541 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 71

28 Jul 2022 11:22:39,509 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 71

28 Jul 2022 11:22:39,513 INFO : 70% Done

28 Jul 2022 11:22:40,501 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 71

28 Jul 2022 11:22:41,480 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 71

28 Jul 2022 11:22:42,463 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 7 of 71

28 Jul 2022 11:22:42,465 INFO : 71% Done

28 Jul 2022 11:22:43,423 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 8 of 71

28 Jul 2022 11:22:44,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 9 of 71

28 Jul 2022 11:22:44,395 INFO : 72% Done

28 Jul 2022 11:22:45,377 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 10 of 71

28 Jul 2022 11:22:46,338 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 11 of 71

28 Jul 2022 11:22:46,339 INFO : 73% Done

28 Jul 2022 11:22:47,323 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 12 of 71

28 Jul 2022 11:22:48,307 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 13 of 71

28 Jul 2022 11:22:49,275 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 14 of 71

28 Jul 2022 11:22:49,277 INFO : 74% Done

28 Jul 2022 11:22:50,243 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 15 of 71

28 Jul 2022 11:22:51,192 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 16 of 71

28 Jul 2022 11:22:51,194 INFO : 75% Done

28 Jul 2022 11:22:52,194 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 17 of 71

28 Jul 2022 11:22:53,176 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 18 of 71

28 Jul 2022 11:22:53,178 INFO : 76% Done

28 Jul 2022 11:22:54,170 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 19 of 71

28 Jul 2022 11:22:55,135 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 20 of 71

28 Jul 2022 11:22:56,129 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 21 of 71

28 Jul 2022 11:22:56,131 INFO : 77% Done

28 Jul 2022 11:22:57,107 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 22 of 71

28 Jul 2022 11:22:58,091 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 23 of 71

28 Jul 2022 11:22:58,093 INFO : 78% Done

28 Jul 2022 11:22:59,044 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 24 of 71

28 Jul 2022 11:23:00,013 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 25 of 71

28 Jul 2022 11:23:00,017 INFO : 79% Done

28 Jul 2022 11:23:01,006 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 26 of 71

28 Jul 2022 11:23:01,984 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 27 of 71

28 Jul 2022 11:23:02,975 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 28 of 71

28 Jul 2022 11:23:02,977 INFO : 80% Done

28 Jul 2022 11:23:03,945 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 29 of 71

28 Jul 2022 11:23:04,923 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 30 of 71

28 Jul 2022 11:23:04,925 INFO : 81% Done

28 Jul 2022 11:23:05,914 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 31 of 71

28 Jul 2022 11:23:06,881 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 32 of 71

28 Jul 2022 11:23:06,883 INFO : 82% Done

28 Jul 2022 11:23:07,886 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 33 of 71

28 Jul 2022 11:23:08,869 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 34 of 71

28 Jul 2022 11:23:09,879 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 35 of 71

28 Jul 2022 11:23:09,881 INFO : 83% Done

28 Jul 2022 11:23:10,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 36 of 71

28 Jul 2022 11:23:11,843 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 37 of 71

28 Jul 2022 11:23:11,845 INFO : 84% Done

28 Jul 2022 11:23:12,843 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 38 of 71

28 Jul 2022 11:23:13,838 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 39 of 71

28 Jul 2022 11:23:13,840 INFO : 85% Done

28 Jul 2022 11:23:14,850 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 40 of 71

28 Jul 2022 11:23:15,860 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 41 of 71

28 Jul 2022 11:23:16,882 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 42 of 71

28 Jul 2022 11:23:16,884 INFO : 86% Done

28 Jul 2022 11:23:17,842 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 43 of 71

28 Jul 2022 11:23:18,820 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 44 of 71

28 Jul 2022 11:23:18,822 INFO : 87% Done

28 Jul 2022 11:23:19,836 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 45 of 71

28 Jul 2022 11:23:20,825 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 46 of 71

28 Jul 2022 11:23:20,827 INFO : 88% Done

28 Jul 2022 11:23:21,838 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 47 of 71

28 Jul 2022 11:23:22,829 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 48 of 71

28 Jul 2022 11:23:23,836 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 49 of 71

28 Jul 2022 11:23:23,838 INFO : 89% Done

28 Jul 2022 11:23:24,848 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 50 of 71

28 Jul 2022 11:23:25,842 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 51 of 71

28 Jul 2022 11:23:25,844 INFO : 90% Done

28 Jul 2022 11:23:26,839 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 52 of 71

28 Jul 2022 11:23:27,828 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 53 of 71

28 Jul 2022 11:23:27,830 INFO : 91% Done

28 Jul 2022 11:23:28,837 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 54 of 71

28 Jul 2022 11:23:29,810 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 55 of 71

28 Jul 2022 11:23:30,812 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 56 of 71

28 Jul 2022 11:23:30,814 INFO : 92% Done

28 Jul 2022 11:23:31,796 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 57 of 71

28 Jul 2022 11:23:32,790 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 58 of 71

28 Jul 2022 11:23:32,816 INFO : 93% Done

28 Jul 2022 11:23:33,843 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 59 of 71

28 Jul 2022 11:23:34,839 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 60 of 71

28 Jul 2022 11:23:34,841 INFO : 94% Done

28 Jul 2022 11:23:35,836 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 61 of 71

28 Jul 2022 11:23:36,825 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 62 of 71

28 Jul 2022 11:23:37,831 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 63 of 71

28 Jul 2022 11:23:37,847 INFO : 95% Done

28 Jul 2022 11:23:38,845 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 64 of 71

28 Jul 2022 11:23:39,844 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 65 of 71

28 Jul 2022 11:23:39,846 INFO : 96% Done

28 Jul 2022 11:23:40,847 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 66 of 71

28 Jul 2022 11:23:41,875 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 67 of 71

28 Jul 2022 11:23:42,893 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 68 of 71

28 Jul 2022 11:23:42,895 INFO : 97% Done

28 Jul 2022 11:23:43,886 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 69 of 71

28 Jul 2022 11:23:44,886 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 70 of 71

28 Jul 2022 11:23:44,888 INFO : 98% Done

28 Jul 2022 11:23:45,910 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 71 of 71

28 Jul 2022 11:23:45,911 INFO : Done updating previously imported sample file data.

28 Jul 2022 11:23:46,446 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-57-28.sky.zip have been updated with newer data.

28 Jul 2022 11:23:46,446 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-57-28.sky.zip

28 Jul 2022 11:23:46,446 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-57-28

28 Jul 2022 11:23:46,446 INFO : Creating and populating temp tables for Proportion values

28 Jul 2022 11:23:46,502 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

28 Jul 2022 11:23:46,635 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

28 Jul 2022 11:23:46,683 INFO : Cleaning up temp tables

28 Jul 2022 11:23:46,928 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_14-22-21.sky.zip

28 Jul 2022 11:23:46,937 INFO : 100% Done

28 Jul 2022 11:23:46,959 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'