28 Jul 2022 10:07:49,920 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
28 Jul 2022 10:07:49,922 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-07-39.sky.zip
28 Jul 2022 10:07:49,922 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib
28 Jul 2022 10:07:49,924 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd
28 Jul 2022 10:07:50,718 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky
28 Jul 2022 10:07:50,752 WARN : The version of this Skyline document is 22.12. This is newer than the highest supported version 20.22
28 Jul 2022 10:07:50,760 INFO : 2% Done
28 Jul 2022 10:07:50,976 DEBUG: Starting to load chromatogram headers
28 Jul 2022 10:07:50,985 DEBUG: Done loading chromatogram headers
28 Jul 2022 10:07:51,326 INFO : Inserting Precursors_Mix_1
28 Jul 2022 10:07:51,335 INFO : 4% Done
28 Jul 2022 10:07:51,391 INFO : 7% Done
28 Jul 2022 10:07:51,443 INFO : 10% Done
28 Jul 2022 10:07:51,494 INFO : 12% Done
28 Jul 2022 10:07:51,544 INFO : 14% Done
28 Jul 2022 10:07:51,596 INFO : 17% Done
28 Jul 2022 10:07:51,647 INFO : 20% Done
28 Jul 2022 10:07:51,697 INFO : 22% Done
28 Jul 2022 10:07:51,748 INFO : 25% Done
28 Jul 2022 10:07:51,798 INFO : 27% Done
28 Jul 2022 10:07:51,851 INFO : 29% Done
28 Jul 2022 10:07:51,899 INFO : 32% Done
28 Jul 2022 10:07:51,949 INFO : 35% Done
28 Jul 2022 10:07:52,000 INFO : 37% Done
28 Jul 2022 10:07:52,050 INFO : 40% Done
28 Jul 2022 10:07:52,098 INFO : 43% Done
28 Jul 2022 10:07:52,148 INFO : 45% Done
28 Jul 2022 10:07:52,202 INFO : 47% Done
28 Jul 2022 10:07:52,253 INFO : 50% Done
28 Jul 2022 10:07:52,307 INFO : 53% Done
28 Jul 2022 10:07:52,358 INFO : 55% Done
28 Jul 2022 10:07:52,410 INFO : 58% Done
28 Jul 2022 10:07:52,468 INFO : 60% Done
28 Jul 2022 10:07:52,516 DEBUG: Total molecules inserted: 23
28 Jul 2022 10:07:52,517 INFO : Done parsing Skyline document.
28 Jul 2022 10:07:52,576 INFO : No group comparisons found.
28 Jul 2022 10:07:52,576 INFO : Calculating calibration curves
28 Jul 2022 10:07:52,577 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1
28 Jul 2022 10:07:52,875 INFO : 68% Done
28 Jul 2022 10:07:52,880 INFO : Done calculating calibration curves.
28 Jul 2022 10:07:53,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 71
28 Jul 2022 10:07:54,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 71
28 Jul 2022 10:07:54,909 INFO : 69% Done
28 Jul 2022 10:07:55,908 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 71
28 Jul 2022 10:07:56,952 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 71
28 Jul 2022 10:07:56,954 INFO : 70% Done
28 Jul 2022 10:07:58,016 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 71
28 Jul 2022 10:07:58,980 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 71
28 Jul 2022 10:07:59,972 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 71
28 Jul 2022 10:07:59,974 INFO : 71% Done
28 Jul 2022 10:08:00,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 8 of 71
28 Jul 2022 10:08:01,864 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 9 of 71
28 Jul 2022 10:08:01,866 INFO : 72% Done
28 Jul 2022 10:08:02,860 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 10 of 71
28 Jul 2022 10:08:03,819 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 11 of 71
28 Jul 2022 10:08:03,823 INFO : 73% Done
28 Jul 2022 10:08:04,832 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 12 of 71
28 Jul 2022 10:08:05,816 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 13 of 71
28 Jul 2022 10:08:06,819 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 14 of 71
28 Jul 2022 10:08:06,821 INFO : 74% Done
28 Jul 2022 10:08:07,799 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 15 of 71
28 Jul 2022 10:08:08,797 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 16 of 71
28 Jul 2022 10:08:08,800 INFO : 75% Done
28 Jul 2022 10:08:09,792 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 17 of 71
28 Jul 2022 10:08:10,768 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 18 of 71
28 Jul 2022 10:08:10,770 INFO : 76% Done
28 Jul 2022 10:08:11,776 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 19 of 71
28 Jul 2022 10:08:12,738 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 20 of 71
28 Jul 2022 10:08:13,727 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 21 of 71
28 Jul 2022 10:08:13,729 INFO : 77% Done
28 Jul 2022 10:08:14,697 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 22 of 71
28 Jul 2022 10:08:15,685 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 23 of 71
28 Jul 2022 10:08:15,687 INFO : 78% Done
28 Jul 2022 10:08:16,655 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 24 of 71
28 Jul 2022 10:08:17,637 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 25 of 71
28 Jul 2022 10:08:17,639 INFO : 79% Done
28 Jul 2022 10:08:18,624 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 26 of 71
28 Jul 2022 10:08:19,600 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 27 of 71
28 Jul 2022 10:08:20,589 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 28 of 71
28 Jul 2022 10:08:20,592 INFO : 80% Done
28 Jul 2022 10:08:21,548 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 29 of 71
28 Jul 2022 10:08:22,525 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 30 of 71
28 Jul 2022 10:08:22,527 INFO : 81% Done
28 Jul 2022 10:08:23,519 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 31 of 71
28 Jul 2022 10:08:24,473 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 32 of 71
28 Jul 2022 10:08:24,475 INFO : 82% Done
28 Jul 2022 10:08:25,461 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 33 of 71
28 Jul 2022 10:08:26,440 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 34 of 71
28 Jul 2022 10:08:27,421 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 35 of 71
28 Jul 2022 10:08:27,423 INFO : 83% Done
28 Jul 2022 10:08:28,410 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 36 of 71
28 Jul 2022 10:08:29,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 37 of 71
28 Jul 2022 10:08:29,397 INFO : 84% Done
28 Jul 2022 10:08:30,382 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 38 of 71
28 Jul 2022 10:08:31,359 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 39 of 71
28 Jul 2022 10:08:31,361 INFO : 85% Done
28 Jul 2022 10:08:32,381 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 40 of 71
28 Jul 2022 10:08:33,341 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 41 of 71
28 Jul 2022 10:08:34,335 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 42 of 71
28 Jul 2022 10:08:34,338 INFO : 86% Done
28 Jul 2022 10:08:35,297 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 43 of 71
28 Jul 2022 10:08:36,255 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 44 of 71
28 Jul 2022 10:08:36,257 INFO : 87% Done
28 Jul 2022 10:08:37,258 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 45 of 71
28 Jul 2022 10:08:38,273 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 46 of 71
28 Jul 2022 10:08:38,275 INFO : 88% Done
28 Jul 2022 10:08:39,258 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 47 of 71
28 Jul 2022 10:08:40,235 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 48 of 71
28 Jul 2022 10:08:41,222 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 49 of 71
28 Jul 2022 10:08:41,224 INFO : 89% Done
28 Jul 2022 10:08:42,212 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 50 of 71
28 Jul 2022 10:08:43,189 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 51 of 71
28 Jul 2022 10:08:43,191 INFO : 90% Done
28 Jul 2022 10:08:44,183 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 52 of 71
28 Jul 2022 10:08:45,157 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 53 of 71
28 Jul 2022 10:08:45,159 INFO : 91% Done
28 Jul 2022 10:08:46,148 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 54 of 71
28 Jul 2022 10:08:47,113 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 55 of 71
28 Jul 2022 10:08:48,101 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 56 of 71
28 Jul 2022 10:08:48,103 INFO : 92% Done
28 Jul 2022 10:08:49,067 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 57 of 71
28 Jul 2022 10:08:50,056 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 58 of 71
28 Jul 2022 10:08:50,058 INFO : 93% Done
28 Jul 2022 10:08:51,039 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 59 of 71
28 Jul 2022 10:08:52,015 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 60 of 71
28 Jul 2022 10:08:52,017 INFO : 94% Done
28 Jul 2022 10:08:53,018 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 61 of 71
28 Jul 2022 10:08:53,990 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 62 of 71
28 Jul 2022 10:08:54,977 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 63 of 71
28 Jul 2022 10:08:54,979 INFO : 95% Done
28 Jul 2022 10:08:55,956 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 64 of 71
28 Jul 2022 10:08:56,908 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 65 of 71
28 Jul 2022 10:08:56,910 INFO : 96% Done
28 Jul 2022 10:08:57,897 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 66 of 71
28 Jul 2022 10:08:58,876 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 67 of 71
28 Jul 2022 10:08:59,869 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 68 of 71
28 Jul 2022 10:08:59,871 INFO : 97% Done
28 Jul 2022 10:09:00,848 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 69 of 71
28 Jul 2022 10:09:01,835 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 70 of 71
28 Jul 2022 10:09:01,838 INFO : 98% Done
28 Jul 2022 10:09:02,829 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 71 of 71
28 Jul 2022 10:09:02,829 INFO : Done updating previously imported sample file data.
28 Jul 2022 10:09:03,338 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_12-42-48.sky.zip have been updated with newer data.
28 Jul 2022 10:09:03,338 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_12-42-48.sky.zip
28 Jul 2022 10:09:03,338 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_12-42-48
28 Jul 2022 10:09:03,338 INFO : Creating and populating temp tables for Proportion values
28 Jul 2022 10:09:03,392 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jul 2022 10:09:03,515 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jul 2022 10:09:03,561 INFO : Cleaning up temp tables
28 Jul 2022 10:09:03,796 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-07-39.sky.zip
28 Jul 2022 10:09:03,799 INFO : 100% Done
28 Jul 2022 10:09:03,824 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'