22 Apr 2022 11:29:28,785 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

22 Apr 2022 11:29:28,787 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-04-22_14-29-20.sky.zip

22 Apr 2022 11:29:28,787 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

22 Apr 2022 11:29:28,789 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

22 Apr 2022 11:29:29,498 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

22 Apr 2022 11:29:29,556 WARN : The version of this Skyline document is 22.11. This is newer than the highest supported version 20.22

22 Apr 2022 11:29:29,564 INFO : 2% Done

22 Apr 2022 11:29:29,761 DEBUG: Starting to load chromatogram headers

22 Apr 2022 11:29:29,769 DEBUG: Done loading chromatogram headers

22 Apr 2022 11:29:29,974 INFO : Inserting Precursors_Mix_1

22 Apr 2022 11:29:29,983 INFO : 4% Done

22 Apr 2022 11:29:30,033 INFO : 7% Done

22 Apr 2022 11:29:30,080 INFO : 10% Done

22 Apr 2022 11:29:30,126 INFO : 12% Done

22 Apr 2022 11:29:30,172 INFO : 14% Done

22 Apr 2022 11:29:30,219 INFO : 17% Done

22 Apr 2022 11:29:30,265 INFO : 20% Done

22 Apr 2022 11:29:30,312 INFO : 22% Done

22 Apr 2022 11:29:30,359 INFO : 25% Done

22 Apr 2022 11:29:30,406 INFO : 27% Done

22 Apr 2022 11:29:30,455 INFO : 30% Done

22 Apr 2022 11:29:30,500 INFO : 32% Done

22 Apr 2022 11:29:30,548 INFO : 35% Done

22 Apr 2022 11:29:30,594 INFO : 37% Done

22 Apr 2022 11:29:30,641 INFO : 40% Done

22 Apr 2022 11:29:30,687 INFO : 43% Done

22 Apr 2022 11:29:30,733 INFO : 45% Done

22 Apr 2022 11:29:30,780 INFO : 47% Done

22 Apr 2022 11:29:30,826 INFO : 50% Done

22 Apr 2022 11:29:30,874 INFO : 53% Done

22 Apr 2022 11:29:30,920 INFO : 55% Done

22 Apr 2022 11:29:30,968 INFO : 58% Done

22 Apr 2022 11:29:31,021 INFO : 60% Done

22 Apr 2022 11:29:31,065 DEBUG: Total molecules inserted: 23

22 Apr 2022 11:29:31,066 INFO : Done parsing Skyline document.

22 Apr 2022 11:29:31,120 INFO : No group comparisons found.

22 Apr 2022 11:29:31,120 INFO : Calculating calibration curves

22 Apr 2022 11:29:31,121 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

22 Apr 2022 11:29:31,403 INFO : 68% Done

22 Apr 2022 11:29:31,408 INFO : Done calculating calibration curves.

22 Apr 2022 11:29:32,404 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 66

22 Apr 2022 11:29:32,407 INFO : 69% Done

22 Apr 2022 11:29:33,388 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 66

22 Apr 2022 11:29:34,385 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 66

22 Apr 2022 11:29:34,387 INFO : 70% Done

22 Apr 2022 11:29:35,357 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 66

22 Apr 2022 11:29:36,355 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 66

22 Apr 2022 11:29:37,342 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 66

22 Apr 2022 11:29:37,344 INFO : 71% Done

22 Apr 2022 11:29:38,370 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 7 of 66

22 Apr 2022 11:29:39,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 8 of 66

22 Apr 2022 11:29:39,397 INFO : 72% Done

22 Apr 2022 11:29:40,410 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 9 of 66

22 Apr 2022 11:29:41,404 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 10 of 66

22 Apr 2022 11:29:41,406 INFO : 73% Done

22 Apr 2022 11:29:42,401 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 11 of 66

22 Apr 2022 11:29:43,371 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 12 of 66

22 Apr 2022 11:29:44,362 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 13 of 66

22 Apr 2022 11:29:44,364 INFO : 74% Done

22 Apr 2022 11:29:45,339 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 14 of 66

22 Apr 2022 11:29:46,312 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 15 of 66

22 Apr 2022 11:29:46,314 INFO : 75% Done

22 Apr 2022 11:29:47,303 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 16 of 66

22 Apr 2022 11:29:48,289 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 17 of 66

22 Apr 2022 11:29:48,291 INFO : 76% Done

22 Apr 2022 11:29:49,277 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 18 of 66

22 Apr 2022 11:29:50,257 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 19 of 66

22 Apr 2022 11:29:50,258 INFO : 77% Done

22 Apr 2022 11:29:51,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 20 of 66

22 Apr 2022 11:29:52,338 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 21 of 66

22 Apr 2022 11:29:52,340 INFO : 78% Done

22 Apr 2022 11:29:53,361 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 22 of 66

22 Apr 2022 11:29:54,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 23 of 66

22 Apr 2022 11:29:54,396 INFO : 79% Done

22 Apr 2022 11:29:55,372 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 24 of 66

22 Apr 2022 11:29:56,373 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 25 of 66

22 Apr 2022 11:29:57,349 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 26 of 66

22 Apr 2022 11:29:57,350 INFO : 80% Done

22 Apr 2022 11:29:58,337 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 27 of 66

22 Apr 2022 11:29:59,315 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 28 of 66

22 Apr 2022 11:29:59,317 INFO : 81% Done

22 Apr 2022 11:30:00,302 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 29 of 66

22 Apr 2022 11:30:01,292 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 30 of 66

22 Apr 2022 11:30:01,294 INFO : 82% Done

22 Apr 2022 11:30:02,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 31 of 66

22 Apr 2022 11:30:03,286 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 32 of 66

22 Apr 2022 11:30:04,266 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 33 of 66

22 Apr 2022 11:30:04,268 INFO : 83% Done

22 Apr 2022 11:30:05,267 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 34 of 66

22 Apr 2022 11:30:05,269 INFO : 84% Done

22 Apr 2022 11:30:06,250 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 35 of 66

22 Apr 2022 11:30:07,255 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 36 of 66

22 Apr 2022 11:30:07,257 INFO : 85% Done

22 Apr 2022 11:30:08,239 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 37 of 66

22 Apr 2022 11:30:09,235 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 38 of 66

22 Apr 2022 11:30:10,227 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 39 of 66

22 Apr 2022 11:30:10,229 INFO : 86% Done

22 Apr 2022 11:30:11,201 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 40 of 66

22 Apr 2022 11:30:12,185 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 41 of 66

22 Apr 2022 11:30:12,187 INFO : 87% Done

22 Apr 2022 11:30:13,174 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 42 of 66

22 Apr 2022 11:30:14,149 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 43 of 66

22 Apr 2022 11:30:14,151 INFO : 88% Done

22 Apr 2022 11:30:15,147 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 44 of 66

22 Apr 2022 11:30:16,122 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 45 of 66

22 Apr 2022 11:30:17,120 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 46 of 66

22 Apr 2022 11:30:17,122 INFO : 89% Done

22 Apr 2022 11:30:18,106 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 47 of 66

22 Apr 2022 11:30:19,098 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 48 of 66

22 Apr 2022 11:30:19,100 INFO : 90% Done

22 Apr 2022 11:30:20,083 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 49 of 66

22 Apr 2022 11:30:21,065 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 50 of 66

22 Apr 2022 11:30:21,067 INFO : 91% Done

22 Apr 2022 11:30:22,053 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 51 of 66

22 Apr 2022 11:30:23,032 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 52 of 66

22 Apr 2022 11:30:23,034 INFO : 92% Done

22 Apr 2022 11:30:24,035 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 53 of 66

22 Apr 2022 11:30:25,011 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 54 of 66

22 Apr 2022 11:30:25,013 INFO : 93% Done

22 Apr 2022 11:30:26,003 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 55 of 66

22 Apr 2022 11:30:26,984 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 56 of 66

22 Apr 2022 11:30:26,986 INFO : 94% Done

22 Apr 2022 11:30:27,979 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 57 of 66

22 Apr 2022 11:30:28,965 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 58 of 66

22 Apr 2022 11:30:29,967 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 59 of 66

22 Apr 2022 11:30:29,969 INFO : 95% Done

22 Apr 2022 11:30:30,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 60 of 66

22 Apr 2022 11:30:31,942 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 61 of 66

22 Apr 2022 11:30:31,944 INFO : 96% Done

22 Apr 2022 11:30:32,939 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 62 of 66

22 Apr 2022 11:30:33,920 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 63 of 66

22 Apr 2022 11:30:33,922 INFO : 97% Done

22 Apr 2022 11:30:34,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 64 of 66

22 Apr 2022 11:30:35,933 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 65 of 66

22 Apr 2022 11:30:36,944 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 66 of 66

22 Apr 2022 11:30:36,946 INFO : 98% Done

22 Apr 2022 11:30:36,946 INFO : Done updating previously imported sample file data.

22 Apr 2022 11:30:37,527 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-04-22_12-57-55.sky.zip have been updated with newer data.

22 Apr 2022 11:30:37,527 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-04-22_12-57-55.sky.zip

22 Apr 2022 11:30:37,527 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-04-22_12-57-55

22 Apr 2022 11:30:37,527 INFO : Creating and populating temp tables for Proportion values

22 Apr 2022 11:30:37,568 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

22 Apr 2022 11:30:37,682 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

22 Apr 2022 11:30:37,724 INFO : Cleaning up temp tables

22 Apr 2022 11:30:37,958 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-04-22_14-29-20.sky.zip

22 Apr 2022 11:30:37,961 INFO : 100% Done

22 Apr 2022 11:30:37,984 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'