22 Apr 2022 09:58:04,042 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

22 Apr 2022 09:58:04,044 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-04-22_12-57-55.sky.zip

22 Apr 2022 09:58:04,045 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

22 Apr 2022 09:58:04,047 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

22 Apr 2022 09:58:04,707 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

22 Apr 2022 09:58:04,753 WARN : The version of this Skyline document is 22.11. This is newer than the highest supported version 20.22

22 Apr 2022 09:58:04,765 INFO : 2% Done

22 Apr 2022 09:58:04,956 DEBUG: Starting to load chromatogram headers

22 Apr 2022 09:58:04,965 DEBUG: Done loading chromatogram headers

22 Apr 2022 09:58:05,258 INFO : Inserting Precursors_Mix_1

22 Apr 2022 09:58:05,266 INFO : 4% Done

22 Apr 2022 09:58:05,317 INFO : 7% Done

22 Apr 2022 09:58:05,371 INFO : 10% Done

22 Apr 2022 09:58:05,419 INFO : 12% Done

22 Apr 2022 09:58:05,466 INFO : 14% Done

22 Apr 2022 09:58:05,513 INFO : 17% Done

22 Apr 2022 09:58:05,559 INFO : 20% Done

22 Apr 2022 09:58:05,607 INFO : 22% Done

22 Apr 2022 09:58:05,654 INFO : 25% Done

22 Apr 2022 09:58:05,702 INFO : 27% Done

22 Apr 2022 09:58:05,751 INFO : 29% Done

22 Apr 2022 09:58:05,797 INFO : 32% Done

22 Apr 2022 09:58:05,844 INFO : 35% Done

22 Apr 2022 09:58:05,890 INFO : 37% Done

22 Apr 2022 09:58:05,943 INFO : 40% Done

22 Apr 2022 09:58:05,992 INFO : 43% Done

22 Apr 2022 09:58:06,051 INFO : 45% Done

22 Apr 2022 09:58:06,117 INFO : 47% Done

22 Apr 2022 09:58:06,174 INFO : 50% Done

22 Apr 2022 09:58:06,227 INFO : 53% Done

22 Apr 2022 09:58:06,277 INFO : 55% Done

22 Apr 2022 09:58:06,332 INFO : 58% Done

22 Apr 2022 09:58:06,389 INFO : 60% Done

22 Apr 2022 09:58:06,433 DEBUG: Total molecules inserted: 23

22 Apr 2022 09:58:06,435 INFO : Done parsing Skyline document.

22 Apr 2022 09:58:06,489 INFO : No group comparisons found.

22 Apr 2022 09:58:06,489 INFO : Calculating calibration curves

22 Apr 2022 09:58:06,490 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

22 Apr 2022 09:58:06,783 INFO : 68% Done

22 Apr 2022 09:58:06,787 INFO : Done calculating calibration curves.

22 Apr 2022 09:58:07,784 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 60

22 Apr 2022 09:58:07,786 INFO : 69% Done

22 Apr 2022 09:58:08,756 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 60

22 Apr 2022 09:58:09,744 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 60

22 Apr 2022 09:58:09,746 INFO : 70% Done

22 Apr 2022 09:58:10,690 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 60

22 Apr 2022 09:58:11,668 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 60

22 Apr 2022 09:58:12,627 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 60

22 Apr 2022 09:58:12,629 INFO : 71% Done

22 Apr 2022 09:58:13,596 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 7 of 60

22 Apr 2022 09:58:13,598 INFO : 72% Done

22 Apr 2022 09:58:14,590 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 8 of 60

22 Apr 2022 09:58:15,567 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 9 of 60

22 Apr 2022 09:58:15,569 INFO : 73% Done

22 Apr 2022 09:58:16,534 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 10 of 60

22 Apr 2022 09:58:17,507 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 11 of 60

22 Apr 2022 09:58:18,522 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 12 of 60

22 Apr 2022 09:58:18,523 INFO : 74% Done

22 Apr 2022 09:58:19,454 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 13 of 60

22 Apr 2022 09:58:19,456 INFO : 75% Done

22 Apr 2022 09:58:20,427 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 14 of 60

22 Apr 2022 09:58:21,383 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 15 of 60

22 Apr 2022 09:58:21,385 INFO : 76% Done

22 Apr 2022 09:58:22,341 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 16 of 60

22 Apr 2022 09:58:23,309 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 17 of 60

22 Apr 2022 09:58:24,289 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 18 of 60

22 Apr 2022 09:58:24,291 INFO : 77% Done

22 Apr 2022 09:58:25,331 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 19 of 60

22 Apr 2022 09:58:25,332 INFO : 78% Done

22 Apr 2022 09:58:26,289 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 20 of 60

22 Apr 2022 09:58:27,285 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 21 of 60

22 Apr 2022 09:58:27,287 INFO : 79% Done

22 Apr 2022 09:58:28,243 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 22 of 60

22 Apr 2022 09:58:29,225 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 23 of 60

22 Apr 2022 09:58:30,193 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 24 of 60

22 Apr 2022 09:58:30,195 INFO : 80% Done

22 Apr 2022 09:58:31,143 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 25 of 60

22 Apr 2022 09:58:31,145 INFO : 81% Done

22 Apr 2022 09:58:32,098 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 26 of 60

22 Apr 2022 09:58:33,069 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 27 of 60

22 Apr 2022 09:58:33,071 INFO : 82% Done

22 Apr 2022 09:58:34,011 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 28 of 60

22 Apr 2022 09:58:34,989 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 29 of 60

22 Apr 2022 09:58:35,923 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 30 of 60

22 Apr 2022 09:58:35,925 INFO : 83% Done

22 Apr 2022 09:58:36,897 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 31 of 60

22 Apr 2022 09:58:36,899 INFO : 84% Done

22 Apr 2022 09:58:37,837 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 32 of 60

22 Apr 2022 09:58:38,801 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 33 of 60

22 Apr 2022 09:58:38,803 INFO : 85% Done

22 Apr 2022 09:58:39,773 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 34 of 60

22 Apr 2022 09:58:40,725 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 35 of 60

22 Apr 2022 09:58:41,706 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 36 of 60

22 Apr 2022 09:58:41,708 INFO : 86% Done

22 Apr 2022 09:58:42,646 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 37 of 60

22 Apr 2022 09:58:42,648 INFO : 87% Done

22 Apr 2022 09:58:43,583 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 38 of 60

22 Apr 2022 09:58:44,566 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 39 of 60

22 Apr 2022 09:58:44,568 INFO : 88% Done

22 Apr 2022 09:58:45,505 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 40 of 60

22 Apr 2022 09:58:46,465 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 41 of 60

22 Apr 2022 09:58:47,440 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 42 of 60

22 Apr 2022 09:58:47,442 INFO : 89% Done

22 Apr 2022 09:58:48,384 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 43 of 60

22 Apr 2022 09:58:48,386 INFO : 90% Done

22 Apr 2022 09:58:49,329 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 44 of 60

22 Apr 2022 09:58:50,310 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 45 of 60

22 Apr 2022 09:58:50,312 INFO : 91% Done

22 Apr 2022 09:58:51,265 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 46 of 60

22 Apr 2022 09:58:52,244 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 47 of 60

22 Apr 2022 09:58:53,211 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 48 of 60

22 Apr 2022 09:58:53,213 INFO : 92% Done

22 Apr 2022 09:58:54,182 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 49 of 60

22 Apr 2022 09:58:54,184 INFO : 93% Done

22 Apr 2022 09:58:55,137 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 50 of 60

22 Apr 2022 09:58:56,097 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 51 of 60

22 Apr 2022 09:58:56,099 INFO : 94% Done

22 Apr 2022 09:58:57,062 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 52 of 60

22 Apr 2022 09:58:58,009 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 53 of 60

22 Apr 2022 09:58:58,996 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 54 of 60

22 Apr 2022 09:58:58,998 INFO : 95% Done

22 Apr 2022 09:58:59,934 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 55 of 60

22 Apr 2022 09:58:59,936 INFO : 96% Done

22 Apr 2022 09:59:00,868 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 56 of 60

22 Apr 2022 09:59:01,847 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 57 of 60

22 Apr 2022 09:59:01,849 INFO : 97% Done

22 Apr 2022 09:59:02,791 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 58 of 60

22 Apr 2022 09:59:03,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 59 of 60

22 Apr 2022 09:59:04,713 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 60 of 60

22 Apr 2022 09:59:04,715 INFO : 98% Done

22 Apr 2022 09:59:04,715 INFO : Done updating previously imported sample file data.

22 Apr 2022 09:59:05,193 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-42-09.sky.zip have been updated with newer data.

22 Apr 2022 09:59:05,193 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-42-09.sky.zip

22 Apr 2022 09:59:05,193 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-42-09

22 Apr 2022 09:59:05,193 INFO : Creating and populating temp tables for Proportion values

22 Apr 2022 09:59:05,238 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

22 Apr 2022 09:59:05,357 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

22 Apr 2022 09:59:05,398 INFO : Cleaning up temp tables

22 Apr 2022 09:59:05,638 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-04-22_12-57-55.sky.zip

22 Apr 2022 09:59:05,641 INFO : 100% Done

22 Apr 2022 09:59:05,663 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'