23 Mar 2022 19:37:06,920 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 19:37:06,924 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_22-36-51.sky.zip

23 Mar 2022 19:37:06,924 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 19:37:06,929 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 19:37:07,541 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 19:37:07,567 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 19:37:07,574 INFO : 2% Done

23 Mar 2022 19:37:07,783 DEBUG: Starting to load chromatogram headers

23 Mar 2022 19:37:07,791 DEBUG: Done loading chromatogram headers

23 Mar 2022 19:37:08,133 INFO : Inserting Precursors_Mix_1

23 Mar 2022 19:37:08,145 INFO : 4% Done

23 Mar 2022 19:37:08,203 INFO : 7% Done

23 Mar 2022 19:37:08,256 INFO : 10% Done

23 Mar 2022 19:37:08,309 INFO : 12% Done

23 Mar 2022 19:37:08,359 INFO : 14% Done

23 Mar 2022 19:37:08,411 INFO : 17% Done

23 Mar 2022 19:37:08,461 INFO : 20% Done

23 Mar 2022 19:37:08,511 INFO : 22% Done

23 Mar 2022 19:37:08,562 INFO : 25% Done

23 Mar 2022 19:37:08,614 INFO : 27% Done

23 Mar 2022 19:37:08,665 INFO : 30% Done

23 Mar 2022 19:37:08,713 INFO : 32% Done

23 Mar 2022 19:37:08,761 INFO : 35% Done

23 Mar 2022 19:37:08,810 INFO : 37% Done

23 Mar 2022 19:37:08,856 INFO : 40% Done

23 Mar 2022 19:37:08,902 INFO : 43% Done

23 Mar 2022 19:37:08,949 INFO : 45% Done

23 Mar 2022 19:37:08,997 INFO : 47% Done

23 Mar 2022 19:37:09,044 INFO : 50% Done

23 Mar 2022 19:37:09,092 INFO : 53% Done

23 Mar 2022 19:37:09,140 INFO : 55% Done

23 Mar 2022 19:37:09,191 INFO : 58% Done

23 Mar 2022 19:37:09,243 INFO : 60% Done

23 Mar 2022 19:37:09,282 DEBUG: Total molecules inserted: 23

23 Mar 2022 19:37:09,283 INFO : Done parsing Skyline document.

23 Mar 2022 19:37:09,288 INFO : No group comparisons found.

23 Mar 2022 19:37:09,288 INFO : Calculating calibration curves

23 Mar 2022 19:37:09,289 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 19:37:09,622 INFO : 68% Done

23 Mar 2022 19:37:09,627 INFO : Done calculating calibration curves.

23 Mar 2022 19:37:10,782 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 61

23 Mar 2022 19:37:10,785 INFO : 69% Done

23 Mar 2022 19:37:11,766 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 61

23 Mar 2022 19:37:12,768 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 61

23 Mar 2022 19:37:12,771 INFO : 70% Done

23 Mar 2022 19:37:13,730 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 61

23 Mar 2022 19:37:14,712 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 61

23 Mar 2022 19:37:15,686 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 6 of 61

23 Mar 2022 19:37:15,687 INFO : 71% Done

23 Mar 2022 19:37:16,668 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 7 of 61

23 Mar 2022 19:37:17,649 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 8 of 61

23 Mar 2022 19:37:17,651 INFO : 72% Done

23 Mar 2022 19:37:18,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 9 of 61

23 Mar 2022 19:37:18,640 INFO : 73% Done

23 Mar 2022 19:37:19,624 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 10 of 61

23 Mar 2022 19:37:20,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 11 of 61

23 Mar 2022 19:37:21,623 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 12 of 61

23 Mar 2022 19:37:21,625 INFO : 74% Done

23 Mar 2022 19:37:22,613 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 13 of 61

23 Mar 2022 19:37:23,598 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 14 of 61

23 Mar 2022 19:37:23,600 INFO : 75% Done

23 Mar 2022 19:37:24,585 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 15 of 61

23 Mar 2022 19:37:24,587 INFO : 76% Done

23 Mar 2022 19:37:25,579 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 16 of 61

23 Mar 2022 19:37:26,559 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 17 of 61

23 Mar 2022 19:37:27,561 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 18 of 61

23 Mar 2022 19:37:27,563 INFO : 77% Done

23 Mar 2022 19:37:28,552 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 19 of 61

23 Mar 2022 19:37:29,546 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 20 of 61

23 Mar 2022 19:37:29,548 INFO : 78% Done

23 Mar 2022 19:37:30,538 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 21 of 61

23 Mar 2022 19:37:31,540 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 22 of 61

23 Mar 2022 19:37:31,542 INFO : 79% Done

23 Mar 2022 19:37:32,534 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 23 of 61

23 Mar 2022 19:37:33,520 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 24 of 61

23 Mar 2022 19:37:33,521 INFO : 80% Done

23 Mar 2022 19:37:34,542 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 25 of 61

23 Mar 2022 19:37:35,525 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 26 of 61

23 Mar 2022 19:37:35,527 INFO : 81% Done

23 Mar 2022 19:37:36,529 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 27 of 61

23 Mar 2022 19:37:37,517 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 28 of 61

23 Mar 2022 19:37:37,518 INFO : 82% Done

23 Mar 2022 19:37:38,510 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 29 of 61

23 Mar 2022 19:37:39,532 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 30 of 61

23 Mar 2022 19:37:39,534 INFO : 83% Done

23 Mar 2022 19:37:40,522 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 31 of 61

23 Mar 2022 19:37:41,515 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 32 of 61

23 Mar 2022 19:37:41,517 INFO : 84% Done

23 Mar 2022 19:37:42,498 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 33 of 61

23 Mar 2022 19:37:43,486 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 34 of 61

23 Mar 2022 19:37:43,488 INFO : 85% Done

23 Mar 2022 19:37:44,465 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 35 of 61

23 Mar 2022 19:37:45,456 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 36 of 61

23 Mar 2022 19:37:45,458 INFO : 86% Done

23 Mar 2022 19:37:46,437 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 37 of 61

23 Mar 2022 19:37:47,415 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 38 of 61

23 Mar 2022 19:37:47,417 INFO : 87% Done

23 Mar 2022 19:37:48,396 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 39 of 61

23 Mar 2022 19:37:49,363 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 40 of 61

23 Mar 2022 19:37:49,365 INFO : 88% Done

23 Mar 2022 19:37:50,352 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 41 of 61

23 Mar 2022 19:37:51,318 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 42 of 61

23 Mar 2022 19:37:51,321 INFO : 89% Done

23 Mar 2022 19:37:52,309 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 43 of 61

23 Mar 2022 19:37:53,282 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 44 of 61

23 Mar 2022 19:37:53,285 INFO : 90% Done

23 Mar 2022 19:37:54,262 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 45 of 61

23 Mar 2022 19:37:55,261 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 46 of 61

23 Mar 2022 19:37:55,263 INFO : 91% Done

23 Mar 2022 19:37:56,250 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 47 of 61

23 Mar 2022 19:37:57,248 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 48 of 61

23 Mar 2022 19:37:57,250 INFO : 92% Done

23 Mar 2022 19:37:58,226 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 49 of 61

23 Mar 2022 19:37:59,212 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 50 of 61

23 Mar 2022 19:37:59,214 INFO : 93% Done

23 Mar 2022 19:38:00,194 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 51 of 61

23 Mar 2022 19:38:01,180 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 52 of 61

23 Mar 2022 19:38:01,182 INFO : 94% Done

23 Mar 2022 19:38:02,176 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 53 of 61

23 Mar 2022 19:38:03,161 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 54 of 61

23 Mar 2022 19:38:03,163 INFO : 95% Done

23 Mar 2022 19:38:04,148 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 55 of 61

23 Mar 2022 19:38:05,117 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 56 of 61

23 Mar 2022 19:38:05,119 INFO : 96% Done

23 Mar 2022 19:38:06,113 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 57 of 61

23 Mar 2022 19:38:07,102 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 58 of 61

23 Mar 2022 19:38:07,104 INFO : 97% Done

23 Mar 2022 19:38:08,081 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 59 of 61

23 Mar 2022 19:38:09,060 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 60 of 61

23 Mar 2022 19:38:10,034 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 61 of 61

23 Mar 2022 19:38:10,036 INFO : 98% Done

23 Mar 2022 19:38:10,036 INFO : Done updating previously imported sample file data.

23 Mar 2022 19:38:10,634 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_22-11-57.sky.zip have been updated with newer data.

23 Mar 2022 19:38:10,634 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_22-11-57.sky.zip

23 Mar 2022 19:38:10,634 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_22-11-57

23 Mar 2022 19:38:10,634 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 19:38:10,675 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 19:38:10,787 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 19:38:10,829 INFO : Cleaning up temp tables

23 Mar 2022 19:38:11,050 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_22-36-51.sky.zip

23 Mar 2022 19:38:11,052 INFO : 100% Done

23 Mar 2022 19:38:11,081 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'