23 Mar 2022 16:42:52,889 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 16:42:52,892 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-42-39.sky.zip

23 Mar 2022 16:42:52,892 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 16:42:52,896 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 16:42:53,395 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 16:42:53,428 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 16:42:53,436 INFO : 2% Done

23 Mar 2022 16:42:53,612 DEBUG: Starting to load chromatogram headers

23 Mar 2022 16:42:53,619 DEBUG: Done loading chromatogram headers

23 Mar 2022 16:42:53,904 INFO : Inserting Precursors_Mix_1

23 Mar 2022 16:42:53,914 INFO : 4% Done

23 Mar 2022 16:42:53,975 INFO : 7% Done

23 Mar 2022 16:42:54,033 INFO : 10% Done

23 Mar 2022 16:42:54,093 INFO : 12% Done

23 Mar 2022 16:42:54,151 INFO : 14% Done

23 Mar 2022 16:42:54,206 INFO : 17% Done

23 Mar 2022 16:42:54,261 INFO : 20% Done

23 Mar 2022 16:42:54,316 INFO : 22% Done

23 Mar 2022 16:42:54,372 INFO : 25% Done

23 Mar 2022 16:42:54,422 INFO : 27% Done

23 Mar 2022 16:42:54,467 INFO : 30% Done

23 Mar 2022 16:42:54,508 INFO : 32% Done

23 Mar 2022 16:42:54,551 INFO : 35% Done

23 Mar 2022 16:42:54,594 INFO : 37% Done

23 Mar 2022 16:42:54,637 INFO : 40% Done

23 Mar 2022 16:42:54,678 INFO : 43% Done

23 Mar 2022 16:42:54,721 INFO : 45% Done

23 Mar 2022 16:42:54,764 INFO : 48% Done

23 Mar 2022 16:42:54,811 INFO : 50% Done

23 Mar 2022 16:42:54,857 INFO : 53% Done

23 Mar 2022 16:42:54,900 INFO : 55% Done

23 Mar 2022 16:42:54,942 INFO : 58% Done

23 Mar 2022 16:42:54,989 INFO : 60% Done

23 Mar 2022 16:42:55,024 DEBUG: Total molecules inserted: 23

23 Mar 2022 16:42:55,024 INFO : Done parsing Skyline document.

23 Mar 2022 16:42:55,029 INFO : No group comparisons found.

23 Mar 2022 16:42:55,029 INFO : Calculating calibration curves

23 Mar 2022 16:42:55,030 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 16:42:55,325 INFO : 68% Done

23 Mar 2022 16:42:55,330 INFO : Done calculating calibration curves.

23 Mar 2022 16:42:56,482 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 54

23 Mar 2022 16:42:56,484 INFO : 69% Done

23 Mar 2022 16:42:57,469 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 54

23 Mar 2022 16:42:58,483 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 54

23 Mar 2022 16:42:58,485 INFO : 70% Done

23 Mar 2022 16:42:59,487 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 54

23 Mar 2022 16:43:00,484 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 54

23 Mar 2022 16:43:00,487 INFO : 71% Done

23 Mar 2022 16:43:01,508 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 54

23 Mar 2022 16:43:02,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 54

23 Mar 2022 16:43:02,495 INFO : 72% Done

23 Mar 2022 16:43:03,494 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 54

23 Mar 2022 16:43:03,496 INFO : 73% Done

23 Mar 2022 16:43:04,477 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 54

23 Mar 2022 16:43:05,492 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 54

23 Mar 2022 16:43:05,495 INFO : 74% Done

23 Mar 2022 16:43:06,475 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 54

23 Mar 2022 16:43:07,475 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 54

23 Mar 2022 16:43:07,477 INFO : 75% Done

23 Mar 2022 16:43:08,459 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 54

23 Mar 2022 16:43:09,443 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 54

23 Mar 2022 16:43:09,445 INFO : 76% Done

23 Mar 2022 16:43:10,442 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 54

23 Mar 2022 16:43:11,424 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 54

23 Mar 2022 16:43:11,426 INFO : 77% Done

23 Mar 2022 16:43:12,429 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 54

23 Mar 2022 16:43:13,413 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 54

23 Mar 2022 16:43:13,415 INFO : 78% Done

23 Mar 2022 16:43:14,445 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 54

23 Mar 2022 16:43:14,447 INFO : 79% Done

23 Mar 2022 16:43:15,440 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 54

23 Mar 2022 16:43:16,435 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 54

23 Mar 2022 16:43:16,438 INFO : 80% Done

23 Mar 2022 16:43:17,424 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 54

23 Mar 2022 16:43:18,411 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 54

23 Mar 2022 16:43:18,413 INFO : 81% Done

23 Mar 2022 16:43:19,414 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 54

23 Mar 2022 16:43:20,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 54

23 Mar 2022 16:43:20,395 INFO : 82% Done

23 Mar 2022 16:43:21,388 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 54

23 Mar 2022 16:43:22,376 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 54

23 Mar 2022 16:43:22,378 INFO : 83% Done

23 Mar 2022 16:43:23,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 54

23 Mar 2022 16:43:23,397 INFO : 84% Done

23 Mar 2022 16:43:24,391 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 54

23 Mar 2022 16:43:25,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 30 of 54

23 Mar 2022 16:43:25,395 INFO : 85% Done

23 Mar 2022 16:43:26,385 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 31 of 54

23 Mar 2022 16:43:27,369 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 32 of 54

23 Mar 2022 16:43:27,372 INFO : 86% Done

23 Mar 2022 16:43:28,383 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 33 of 54

23 Mar 2022 16:43:29,371 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 34 of 54

23 Mar 2022 16:43:29,373 INFO : 87% Done

23 Mar 2022 16:43:30,376 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 35 of 54

23 Mar 2022 16:43:30,379 INFO : 88% Done

23 Mar 2022 16:43:31,366 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 36 of 54

23 Mar 2022 16:43:32,358 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 37 of 54

23 Mar 2022 16:43:32,361 INFO : 89% Done

23 Mar 2022 16:43:33,345 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 38 of 54

23 Mar 2022 16:43:34,337 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 39 of 54

23 Mar 2022 16:43:34,340 INFO : 90% Done

23 Mar 2022 16:43:35,336 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 40 of 54

23 Mar 2022 16:43:36,322 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 41 of 54

23 Mar 2022 16:43:36,325 INFO : 91% Done

23 Mar 2022 16:43:37,332 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 42 of 54

23 Mar 2022 16:43:38,308 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 43 of 54

23 Mar 2022 16:43:38,311 INFO : 92% Done

23 Mar 2022 16:43:39,301 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 44 of 54

23 Mar 2022 16:43:40,291 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 45 of 54

23 Mar 2022 16:43:40,293 INFO : 93% Done

23 Mar 2022 16:43:41,282 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 46 of 54

23 Mar 2022 16:43:41,285 INFO : 94% Done

23 Mar 2022 16:43:42,284 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 47 of 54

23 Mar 2022 16:43:43,298 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 48 of 54

23 Mar 2022 16:43:43,300 INFO : 95% Done

23 Mar 2022 16:43:44,309 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 49 of 54

23 Mar 2022 16:43:45,293 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 50 of 54

23 Mar 2022 16:43:45,296 INFO : 96% Done

23 Mar 2022 16:43:46,308 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 51 of 54

23 Mar 2022 16:43:47,292 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 52 of 54

23 Mar 2022 16:43:47,295 INFO : 97% Done

23 Mar 2022 16:43:48,294 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 53 of 54

23 Mar 2022 16:43:49,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 54 of 54

23 Mar 2022 16:43:49,292 INFO : 98% Done

23 Mar 2022 16:43:49,292 INFO : Done updating previously imported sample file data.

23 Mar 2022 16:43:49,817 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-17-35.sky.zip have been updated with newer data.

23 Mar 2022 16:43:49,817 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-17-35.sky.zip

23 Mar 2022 16:43:49,817 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-17-35

23 Mar 2022 16:43:49,817 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 16:43:49,856 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 16:43:49,956 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 16:43:49,992 INFO : Cleaning up temp tables

23 Mar 2022 16:43:50,228 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-42-39.sky.zip

23 Mar 2022 16:43:50,231 INFO : 100% Done

23 Mar 2022 16:43:50,258 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'