04 Mar 2022 14:51:34,305 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

04 Mar 2022 14:51:34,310 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-51-22.sky.zip

04 Mar 2022 14:51:34,311 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

04 Mar 2022 14:51:34,313 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

04 Mar 2022 14:51:34,804 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

04 Mar 2022 14:51:34,824 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

04 Mar 2022 14:51:34,834 INFO : 2% Done

04 Mar 2022 14:51:35,008 DEBUG: Starting to load chromatogram headers

04 Mar 2022 14:51:35,015 DEBUG: Done loading chromatogram headers

04 Mar 2022 14:51:35,303 INFO : Inserting Precursors_Mix_1

04 Mar 2022 14:51:35,319 INFO : 4% Done

04 Mar 2022 14:51:35,380 INFO : 7% Done

04 Mar 2022 14:51:35,431 INFO : 10% Done

04 Mar 2022 14:51:35,479 INFO : 12% Done

04 Mar 2022 14:51:35,528 INFO : 14% Done

04 Mar 2022 14:51:35,579 INFO : 17% Done

04 Mar 2022 14:51:35,627 INFO : 20% Done

04 Mar 2022 14:51:35,673 INFO : 22% Done

04 Mar 2022 14:51:35,723 INFO : 25% Done

04 Mar 2022 14:51:35,775 INFO : 27% Done

04 Mar 2022 14:51:35,828 INFO : 30% Done

04 Mar 2022 14:51:35,876 INFO : 32% Done

04 Mar 2022 14:51:35,926 INFO : 35% Done

04 Mar 2022 14:51:35,973 INFO : 38% Done

04 Mar 2022 14:51:36,019 INFO : 40% Done

04 Mar 2022 14:51:36,066 INFO : 43% Done

04 Mar 2022 14:51:36,113 INFO : 45% Done

04 Mar 2022 14:51:36,149 INFO : 47% Done

04 Mar 2022 14:51:36,196 INFO : 50% Done

04 Mar 2022 14:51:36,233 INFO : 53% Done

04 Mar 2022 14:51:36,269 INFO : 55% Done

04 Mar 2022 14:51:36,305 INFO : 58% Done

04 Mar 2022 14:51:36,343 INFO : 60% Done

04 Mar 2022 14:51:36,374 DEBUG: Total molecules inserted: 23

04 Mar 2022 14:51:36,375 INFO : Done parsing Skyline document.

04 Mar 2022 14:51:36,378 INFO : No group comparisons found.

04 Mar 2022 14:51:36,378 INFO : Calculating calibration curves

04 Mar 2022 14:51:36,379 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

04 Mar 2022 14:51:36,596 INFO : 68% Done

04 Mar 2022 14:51:36,600 INFO : Done calculating calibration curves.

04 Mar 2022 14:51:37,849 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 51

04 Mar 2022 14:51:37,852 INFO : 69% Done

04 Mar 2022 14:51:38,839 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 51

04 Mar 2022 14:51:39,841 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 51

04 Mar 2022 14:51:39,843 INFO : 70% Done

04 Mar 2022 14:51:40,815 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 51

04 Mar 2022 14:51:41,812 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 51

04 Mar 2022 14:51:41,814 INFO : 71% Done

04 Mar 2022 14:51:42,798 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 51

04 Mar 2022 14:51:42,799 INFO : 72% Done

04 Mar 2022 14:51:43,782 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 51

04 Mar 2022 14:51:44,786 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 51

04 Mar 2022 14:51:44,789 INFO : 73% Done

04 Mar 2022 14:51:45,796 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 51

04 Mar 2022 14:51:46,842 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 51

04 Mar 2022 14:51:46,845 INFO : 74% Done

04 Mar 2022 14:51:47,793 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 51

04 Mar 2022 14:51:47,795 INFO : 75% Done

04 Mar 2022 14:51:48,786 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 51

04 Mar 2022 14:51:49,744 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 51

04 Mar 2022 14:51:49,746 INFO : 76% Done

04 Mar 2022 14:51:50,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 51

04 Mar 2022 14:51:51,830 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 51

04 Mar 2022 14:51:51,832 INFO : 77% Done

04 Mar 2022 14:51:52,913 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 51

04 Mar 2022 14:51:54,009 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 51

04 Mar 2022 14:51:54,011 INFO : 78% Done

04 Mar 2022 14:51:55,096 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 51

04 Mar 2022 14:51:55,098 INFO : 79% Done

04 Mar 2022 14:51:56,191 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 51

04 Mar 2022 14:51:57,181 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 51

04 Mar 2022 14:51:57,182 INFO : 80% Done

04 Mar 2022 14:51:58,165 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 51

04 Mar 2022 14:51:59,129 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 51

04 Mar 2022 14:51:59,131 INFO : 81% Done

04 Mar 2022 14:52:00,127 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 51

04 Mar 2022 14:52:00,129 INFO : 82% Done

04 Mar 2022 14:52:01,095 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 51

04 Mar 2022 14:52:02,080 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 51

04 Mar 2022 14:52:02,082 INFO : 83% Done

04 Mar 2022 14:52:03,048 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 51

04 Mar 2022 14:52:04,026 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 51

04 Mar 2022 14:52:04,028 INFO : 84% Done

04 Mar 2022 14:52:05,021 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 51

04 Mar 2022 14:52:05,022 INFO : 85% Done

04 Mar 2022 14:52:06,000 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 51

04 Mar 2022 14:52:06,988 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 30 of 51

04 Mar 2022 14:52:06,990 INFO : 86% Done

04 Mar 2022 14:52:07,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 31 of 51

04 Mar 2022 14:52:08,986 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 32 of 51

04 Mar 2022 14:52:08,987 INFO : 87% Done

04 Mar 2022 14:52:09,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 33 of 51

04 Mar 2022 14:52:09,961 INFO : 88% Done

04 Mar 2022 14:52:10,953 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 34 of 51

04 Mar 2022 14:52:11,914 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 35 of 51

04 Mar 2022 14:52:11,916 INFO : 89% Done

04 Mar 2022 14:52:12,896 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 36 of 51

04 Mar 2022 14:52:13,883 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 37 of 51

04 Mar 2022 14:52:13,886 INFO : 90% Done

04 Mar 2022 14:52:14,893 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 38 of 51

04 Mar 2022 14:52:14,895 INFO : 91% Done

04 Mar 2022 14:52:15,919 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 39 of 51

04 Mar 2022 14:52:16,908 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 40 of 51

04 Mar 2022 14:52:17,944 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 41 of 51

04 Mar 2022 14:52:17,945 INFO : 92% Done

04 Mar 2022 14:52:18,946 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 42 of 51

04 Mar 2022 14:52:18,948 INFO : 93% Done

04 Mar 2022 14:52:19,953 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 43 of 51

04 Mar 2022 14:52:20,964 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 44 of 51

04 Mar 2022 14:52:20,966 INFO : 94% Done

04 Mar 2022 14:52:21,982 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 45 of 51

04 Mar 2022 14:52:22,992 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 46 of 51

04 Mar 2022 14:52:22,994 INFO : 95% Done

04 Mar 2022 14:52:24,013 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 47 of 51

04 Mar 2022 14:52:24,015 INFO : 96% Done

04 Mar 2022 14:52:25,001 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 48 of 51

04 Mar 2022 14:52:25,990 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 49 of 51

04 Mar 2022 14:52:25,992 INFO : 97% Done

04 Mar 2022 14:52:26,974 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 50 of 51

04 Mar 2022 14:52:27,980 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 51 of 51

04 Mar 2022 14:52:27,981 INFO : 98% Done

04 Mar 2022 14:52:27,981 INFO : Done updating previously imported sample file data.

04 Mar 2022 14:52:28,467 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-36-02.sky.zip have been updated with newer data.

04 Mar 2022 14:52:28,467 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-36-02.sky.zip

04 Mar 2022 14:52:28,467 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-36-02

04 Mar 2022 14:52:28,467 INFO : Creating and populating temp tables for Proportion values

04 Mar 2022 14:52:28,504 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2022 14:52:28,599 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2022 14:52:28,632 INFO : Cleaning up temp tables

04 Mar 2022 14:52:28,864 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-51-22.sky.zip

04 Mar 2022 14:52:28,867 INFO : 100% Done

04 Mar 2022 14:52:28,893 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'