04 Mar 2022 14:01:10,627 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

04 Mar 2022 14:01:10,629 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-00-58.sky.zip

04 Mar 2022 14:01:10,630 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

04 Mar 2022 14:01:10,631 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

04 Mar 2022 14:01:11,050 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

04 Mar 2022 14:01:11,080 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

04 Mar 2022 14:01:11,085 INFO : 2% Done

04 Mar 2022 14:01:11,241 DEBUG: Starting to load chromatogram headers

04 Mar 2022 14:01:11,247 DEBUG: Done loading chromatogram headers

04 Mar 2022 14:01:11,509 INFO : Inserting Precursors_Mix_1

04 Mar 2022 14:01:11,518 INFO : 4% Done

04 Mar 2022 14:01:11,560 INFO : 7% Done

04 Mar 2022 14:01:11,596 INFO : 10% Done

04 Mar 2022 14:01:11,631 INFO : 12% Done

04 Mar 2022 14:01:11,668 INFO : 14% Done

04 Mar 2022 14:01:11,705 INFO : 17% Done

04 Mar 2022 14:01:11,741 INFO : 20% Done

04 Mar 2022 14:01:11,778 INFO : 22% Done

04 Mar 2022 14:01:11,817 INFO : 25% Done

04 Mar 2022 14:01:11,855 INFO : 27% Done

04 Mar 2022 14:01:11,891 INFO : 30% Done

04 Mar 2022 14:01:11,927 INFO : 32% Done

04 Mar 2022 14:01:11,963 INFO : 35% Done

04 Mar 2022 14:01:11,999 INFO : 37% Done

04 Mar 2022 14:01:12,032 INFO : 40% Done

04 Mar 2022 14:01:12,068 INFO : 43% Done

04 Mar 2022 14:01:12,104 INFO : 45% Done

04 Mar 2022 14:01:12,141 INFO : 47% Done

04 Mar 2022 14:01:12,179 INFO : 50% Done

04 Mar 2022 14:01:12,214 INFO : 53% Done

04 Mar 2022 14:01:12,252 INFO : 55% Done

04 Mar 2022 14:01:12,288 INFO : 58% Done

04 Mar 2022 14:01:12,329 INFO : 60% Done

04 Mar 2022 14:01:12,361 DEBUG: Total molecules inserted: 23

04 Mar 2022 14:01:12,362 INFO : Done parsing Skyline document.

04 Mar 2022 14:01:12,366 INFO : No group comparisons found.

04 Mar 2022 14:01:12,366 INFO : Calculating calibration curves

04 Mar 2022 14:01:12,367 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

04 Mar 2022 14:01:12,614 INFO : 68% Done

04 Mar 2022 14:01:12,620 INFO : Done calculating calibration curves.

04 Mar 2022 14:01:13,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 49

04 Mar 2022 14:01:13,857 INFO : 69% Done

04 Mar 2022 14:01:14,861 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 49

04 Mar 2022 14:01:15,858 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 3 of 49

04 Mar 2022 14:01:15,861 INFO : 70% Done

04 Mar 2022 14:01:16,839 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 49

04 Mar 2022 14:01:17,815 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 5 of 49

04 Mar 2022 14:01:17,818 INFO : 71% Done

04 Mar 2022 14:01:18,819 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 6 of 49

04 Mar 2022 14:01:18,822 INFO : 72% Done

04 Mar 2022 14:01:19,830 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 49

04 Mar 2022 14:01:20,831 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 49

04 Mar 2022 14:01:20,833 INFO : 73% Done

04 Mar 2022 14:01:21,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 9 of 49

04 Mar 2022 14:01:22,865 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 10 of 49

04 Mar 2022 14:01:22,866 INFO : 74% Done

04 Mar 2022 14:01:23,849 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 11 of 49

04 Mar 2022 14:01:23,850 INFO : 75% Done

04 Mar 2022 14:01:24,864 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 12 of 49

04 Mar 2022 14:01:25,864 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 13 of 49

04 Mar 2022 14:01:25,867 INFO : 76% Done

04 Mar 2022 14:01:26,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 14 of 49

04 Mar 2022 14:01:26,857 INFO : 77% Done

04 Mar 2022 14:01:27,845 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 15 of 49

04 Mar 2022 14:01:28,851 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 16 of 49

04 Mar 2022 14:01:28,853 INFO : 78% Done

04 Mar 2022 14:01:29,871 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 17 of 49

04 Mar 2022 14:01:29,873 INFO : 79% Done

04 Mar 2022 14:01:30,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 18 of 49

04 Mar 2022 14:01:31,865 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 19 of 49

04 Mar 2022 14:01:31,867 INFO : 80% Done

04 Mar 2022 14:01:32,844 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 20 of 49

04 Mar 2022 14:01:33,831 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 21 of 49

04 Mar 2022 14:01:33,833 INFO : 81% Done

04 Mar 2022 14:01:34,813 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 22 of 49

04 Mar 2022 14:01:34,815 INFO : 82% Done

04 Mar 2022 14:01:35,800 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 23 of 49

04 Mar 2022 14:01:36,787 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 24 of 49

04 Mar 2022 14:01:36,789 INFO : 83% Done

04 Mar 2022 14:01:37,769 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 25 of 49

04 Mar 2022 14:01:38,754 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 26 of 49

04 Mar 2022 14:01:38,756 INFO : 84% Done

04 Mar 2022 14:01:39,738 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 27 of 49

04 Mar 2022 14:01:39,740 INFO : 85% Done

04 Mar 2022 14:01:40,736 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 28 of 49

04 Mar 2022 14:01:41,711 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 29 of 49

04 Mar 2022 14:01:41,712 INFO : 86% Done

04 Mar 2022 14:01:42,713 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 30 of 49

04 Mar 2022 14:01:43,689 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 31 of 49

04 Mar 2022 14:01:43,691 INFO : 87% Done

04 Mar 2022 14:01:44,677 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 32 of 49

04 Mar 2022 14:01:44,679 INFO : 88% Done

04 Mar 2022 14:01:45,660 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 33 of 49

04 Mar 2022 14:01:46,642 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 34 of 49

04 Mar 2022 14:01:46,644 INFO : 89% Done

04 Mar 2022 14:01:47,632 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 35 of 49

04 Mar 2022 14:01:48,615 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 36 of 49

04 Mar 2022 14:01:48,616 INFO : 90% Done

04 Mar 2022 14:01:49,604 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 37 of 49

04 Mar 2022 14:01:49,606 INFO : 91% Done

04 Mar 2022 14:01:50,579 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 38 of 49

04 Mar 2022 14:01:51,569 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 39 of 49

04 Mar 2022 14:01:51,571 INFO : 92% Done

04 Mar 2022 14:01:52,546 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 40 of 49

04 Mar 2022 14:01:52,547 INFO : 93% Done

04 Mar 2022 14:01:53,541 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 41 of 49

04 Mar 2022 14:01:54,525 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 42 of 49

04 Mar 2022 14:01:54,527 INFO : 94% Done

04 Mar 2022 14:01:55,510 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 43 of 49

04 Mar 2022 14:01:56,491 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 44 of 49

04 Mar 2022 14:01:56,492 INFO : 95% Done

04 Mar 2022 14:01:57,478 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 45 of 49

04 Mar 2022 14:01:57,480 INFO : 96% Done

04 Mar 2022 14:01:58,469 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 46 of 49

04 Mar 2022 14:01:59,445 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 47 of 49

04 Mar 2022 14:01:59,446 INFO : 97% Done

04 Mar 2022 14:02:00,437 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 48 of 49

04 Mar 2022 14:02:01,409 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 49 of 49

04 Mar 2022 14:02:01,411 INFO : 98% Done

04 Mar 2022 14:02:01,411 INFO : Done updating previously imported sample file data.

04 Mar 2022 14:02:02,009 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-02-01_16-04-23.sky.zip have been updated with newer data.

04 Mar 2022 14:02:02,009 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-02-01_16-04-23.sky.zip

04 Mar 2022 14:02:02,009 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-02-01_16-04-23

04 Mar 2022 14:02:02,009 INFO : Creating and populating temp tables for Proportion values

04 Mar 2022 14:02:02,047 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2022 14:02:02,138 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2022 14:02:02,171 INFO : Cleaning up temp tables

04 Mar 2022 14:02:02,395 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-00-58.sky.zip

04 Mar 2022 14:02:02,397 INFO : 100% Done

04 Mar 2022 14:02:02,431 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'