01 Feb 2022 13:04:34,516 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

01 Feb 2022 13:04:34,521 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-02-01_16-04-23.sky.zip

01 Feb 2022 13:04:34,522 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

01 Feb 2022 13:04:34,527 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

01 Feb 2022 13:04:34,940 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

01 Feb 2022 13:04:34,984 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

01 Feb 2022 13:04:34,995 INFO : 2% Done

01 Feb 2022 13:04:35,162 DEBUG: Starting to load chromatogram headers

01 Feb 2022 13:04:35,169 DEBUG: Done loading chromatogram headers

01 Feb 2022 13:04:35,483 INFO : Inserting Precursors_Mix_1

01 Feb 2022 13:04:35,492 INFO : 4% Done

01 Feb 2022 13:04:35,553 INFO : 7% Done

01 Feb 2022 13:04:35,608 INFO : 10% Done

01 Feb 2022 13:04:35,656 INFO : 12% Done

01 Feb 2022 13:04:35,701 INFO : 14% Done

01 Feb 2022 13:04:35,741 INFO : 17% Done

01 Feb 2022 13:04:35,792 INFO : 20% Done

01 Feb 2022 13:04:35,831 INFO : 22% Done

01 Feb 2022 13:04:35,871 INFO : 25% Done

01 Feb 2022 13:04:35,909 INFO : 27% Done

01 Feb 2022 13:04:35,948 INFO : 30% Done

01 Feb 2022 13:04:35,986 INFO : 32% Done

01 Feb 2022 13:04:36,024 INFO : 35% Done

01 Feb 2022 13:04:36,062 INFO : 37% Done

01 Feb 2022 13:04:36,100 INFO : 40% Done

01 Feb 2022 13:04:36,139 INFO : 43% Done

01 Feb 2022 13:04:36,178 INFO : 45% Done

01 Feb 2022 13:04:36,215 INFO : 47% Done

01 Feb 2022 13:04:36,255 INFO : 50% Done

01 Feb 2022 13:04:36,292 INFO : 53% Done

01 Feb 2022 13:04:36,329 INFO : 55% Done

01 Feb 2022 13:04:36,368 INFO : 58% Done

01 Feb 2022 13:04:36,408 INFO : 60% Done

01 Feb 2022 13:04:36,440 DEBUG: Total molecules inserted: 23

01 Feb 2022 13:04:36,441 INFO : Done parsing Skyline document.

01 Feb 2022 13:04:36,445 INFO : No group comparisons found.

01 Feb 2022 13:04:36,445 INFO : Calculating calibration curves

01 Feb 2022 13:04:36,446 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

01 Feb 2022 13:04:36,736 INFO : 68% Done

01 Feb 2022 13:04:36,741 INFO : Done calculating calibration curves.

01 Feb 2022 13:04:37,887 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 48

01 Feb 2022 13:04:37,890 INFO : 69% Done

01 Feb 2022 13:04:38,849 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 48

01 Feb 2022 13:04:39,822 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 3 of 48

01 Feb 2022 13:04:39,824 INFO : 70% Done

01 Feb 2022 13:04:40,786 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 48

01 Feb 2022 13:04:41,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 5 of 48

01 Feb 2022 13:04:41,748 INFO : 71% Done

01 Feb 2022 13:04:42,717 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 6 of 48

01 Feb 2022 13:04:42,719 INFO : 72% Done

01 Feb 2022 13:04:43,674 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 48

01 Feb 2022 13:04:43,676 INFO : 73% Done

01 Feb 2022 13:04:44,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 48

01 Feb 2022 13:04:45,582 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 9 of 48

01 Feb 2022 13:04:45,584 INFO : 74% Done

01 Feb 2022 13:04:46,553 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 10 of 48

01 Feb 2022 13:04:47,501 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 11 of 48

01 Feb 2022 13:04:47,503 INFO : 75% Done

01 Feb 2022 13:04:48,458 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 12 of 48

01 Feb 2022 13:04:48,460 INFO : 76% Done

01 Feb 2022 13:04:49,425 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 48

01 Feb 2022 13:04:50,375 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 48

01 Feb 2022 13:04:50,377 INFO : 77% Done

01 Feb 2022 13:04:51,341 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 48

01 Feb 2022 13:04:52,293 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 48

01 Feb 2022 13:04:52,295 INFO : 78% Done

01 Feb 2022 13:04:53,251 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 17 of 48

01 Feb 2022 13:04:53,253 INFO : 79% Done

01 Feb 2022 13:04:54,198 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 18 of 48

01 Feb 2022 13:04:55,153 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 19 of 48

01 Feb 2022 13:04:55,155 INFO : 80% Done

01 Feb 2022 13:04:56,098 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 20 of 48

01 Feb 2022 13:04:56,100 INFO : 81% Done

01 Feb 2022 13:04:57,050 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 21 of 48

01 Feb 2022 13:04:58,009 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 22 of 48

01 Feb 2022 13:04:58,011 INFO : 82% Done

01 Feb 2022 13:04:58,943 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 23 of 48

01 Feb 2022 13:04:59,904 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 24 of 48

01 Feb 2022 13:04:59,905 INFO : 83% Done

01 Feb 2022 13:05:00,861 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 25 of 48

01 Feb 2022 13:05:00,862 INFO : 84% Done

01 Feb 2022 13:05:01,804 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 26 of 48

01 Feb 2022 13:05:02,766 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 27 of 48

01 Feb 2022 13:05:02,768 INFO : 85% Done

01 Feb 2022 13:05:03,722 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 28 of 48

01 Feb 2022 13:05:04,675 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 29 of 48

01 Feb 2022 13:05:04,677 INFO : 86% Done

01 Feb 2022 13:05:05,618 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 30 of 48

01 Feb 2022 13:05:05,620 INFO : 87% Done

01 Feb 2022 13:05:06,582 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 31 of 48

01 Feb 2022 13:05:06,583 INFO : 88% Done

01 Feb 2022 13:05:07,518 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 32 of 48

01 Feb 2022 13:05:08,478 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 33 of 48

01 Feb 2022 13:05:08,480 INFO : 89% Done

01 Feb 2022 13:05:09,429 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 34 of 48

01 Feb 2022 13:05:10,388 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 35 of 48

01 Feb 2022 13:05:10,390 INFO : 90% Done

01 Feb 2022 13:05:11,339 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 36 of 48

01 Feb 2022 13:05:11,341 INFO : 91% Done

01 Feb 2022 13:05:12,282 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 37 of 48

01 Feb 2022 13:05:13,235 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 38 of 48

01 Feb 2022 13:05:13,237 INFO : 92% Done

01 Feb 2022 13:05:14,166 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 39 of 48

01 Feb 2022 13:05:15,123 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 40 of 48

01 Feb 2022 13:05:15,125 INFO : 93% Done

01 Feb 2022 13:05:16,076 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 41 of 48

01 Feb 2022 13:05:16,078 INFO : 94% Done

01 Feb 2022 13:05:17,037 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 42 of 48

01 Feb 2022 13:05:17,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 43 of 48

01 Feb 2022 13:05:18,001 INFO : 95% Done

01 Feb 2022 13:05:18,941 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 44 of 48

01 Feb 2022 13:05:18,942 INFO : 96% Done

01 Feb 2022 13:05:19,918 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 45 of 48

01 Feb 2022 13:05:20,866 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 46 of 48

01 Feb 2022 13:05:20,868 INFO : 97% Done

01 Feb 2022 13:05:21,822 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 47 of 48

01 Feb 2022 13:05:22,769 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 48 of 48

01 Feb 2022 13:05:22,771 INFO : 98% Done

01 Feb 2022 13:05:22,771 INFO : Done updating previously imported sample file data.

01 Feb 2022 13:05:23,281 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-02-01_15-49-01.sky.zip have been updated with newer data.

01 Feb 2022 13:05:23,282 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-02-01_15-49-01.sky.zip

01 Feb 2022 13:05:23,282 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-02-01_15-49-01

01 Feb 2022 13:05:23,282 INFO : Creating and populating temp tables for Proportion values

01 Feb 2022 13:05:23,316 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

01 Feb 2022 13:05:23,405 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

01 Feb 2022 13:05:23,438 INFO : Cleaning up temp tables

01 Feb 2022 13:05:23,659 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-02-01_16-04-23.sky.zip

01 Feb 2022 13:05:23,662 INFO : 100% Done

01 Feb 2022 13:05:23,690 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'