03 Sep 2021 16:35:09,267 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

03 Sep 2021 16:35:09,272 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-09-03_19-35-02.sky.zip

03 Sep 2021 16:35:09,273 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

03 Sep 2021 16:35:09,282 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

03 Sep 2021 16:35:09,704 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

03 Sep 2021 16:35:09,739 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

03 Sep 2021 16:35:09,766 INFO : 2% Done

03 Sep 2021 16:35:09,953 DEBUG: Starting to load chromatogram headers

03 Sep 2021 16:35:09,961 DEBUG: Done loading chromatogram headers

03 Sep 2021 16:35:10,202 INFO : Inserting Precursors_Mix_1

03 Sep 2021 16:35:10,220 INFO : 4% Done

03 Sep 2021 16:35:10,299 INFO : 7% Done

03 Sep 2021 16:35:10,369 INFO : 10% Done

03 Sep 2021 16:35:10,431 INFO : 12% Done

03 Sep 2021 16:35:10,503 INFO : 14% Done

03 Sep 2021 16:35:10,574 INFO : 17% Done

03 Sep 2021 16:35:10,635 INFO : 20% Done

03 Sep 2021 16:35:10,701 INFO : 22% Done

03 Sep 2021 16:35:10,767 INFO : 25% Done

03 Sep 2021 16:35:10,838 INFO : 27% Done

03 Sep 2021 16:35:10,903 INFO : 30% Done

03 Sep 2021 16:35:10,960 INFO : 32% Done

03 Sep 2021 16:35:11,040 INFO : 35% Done

03 Sep 2021 16:35:11,105 INFO : 37% Done

03 Sep 2021 16:35:11,164 INFO : 40% Done

03 Sep 2021 16:35:11,221 INFO : 43% Done

03 Sep 2021 16:35:11,278 INFO : 45% Done

03 Sep 2021 16:35:11,340 INFO : 48% Done

03 Sep 2021 16:35:11,385 INFO : 50% Done

03 Sep 2021 16:35:11,451 INFO : 53% Done

03 Sep 2021 16:35:11,508 INFO : 55% Done

03 Sep 2021 16:35:11,567 INFO : 58% Done

03 Sep 2021 16:35:11,630 INFO : 60% Done

03 Sep 2021 16:35:11,676 DEBUG: Total molecules inserted: 23

03 Sep 2021 16:35:11,677 INFO : Done parsing Skyline document.

03 Sep 2021 16:35:11,683 INFO : No group comparisons found.

03 Sep 2021 16:35:11,683 INFO : Calculating calibration curves

03 Sep 2021 16:35:11,684 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

03 Sep 2021 16:35:12,126 INFO : 68% Done

03 Sep 2021 16:35:12,137 INFO : Done calculating calibration curves.

03 Sep 2021 16:35:13,750 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 45

03 Sep 2021 16:35:13,754 INFO : 69% Done

03 Sep 2021 16:35:14,928 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 45

03 Sep 2021 16:35:16,121 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 3 of 45

03 Sep 2021 16:35:16,124 INFO : 70% Done

03 Sep 2021 16:35:17,297 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 45

03 Sep 2021 16:35:17,300 INFO : 71% Done

03 Sep 2021 16:35:18,450 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 5 of 45

03 Sep 2021 16:35:19,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 6 of 45

03 Sep 2021 16:35:19,748 INFO : 72% Done

03 Sep 2021 16:35:20,894 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 45

03 Sep 2021 16:35:20,898 INFO : 73% Done

03 Sep 2021 16:35:22,046 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 45

03 Sep 2021 16:35:23,123 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 9 of 45

03 Sep 2021 16:35:23,127 INFO : 74% Done

03 Sep 2021 16:35:24,213 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 10 of 45

03 Sep 2021 16:35:24,218 INFO : 75% Done

03 Sep 2021 16:35:25,304 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 11 of 45

03 Sep 2021 16:35:26,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 12 of 45

03 Sep 2021 16:35:26,398 INFO : 76% Done

03 Sep 2021 16:35:27,497 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 45

03 Sep 2021 16:35:27,501 INFO : 77% Done

03 Sep 2021 16:35:28,600 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 45

03 Sep 2021 16:35:29,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 45

03 Sep 2021 16:35:29,707 INFO : 78% Done

03 Sep 2021 16:35:30,789 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 45

03 Sep 2021 16:35:30,794 INFO : 79% Done

03 Sep 2021 16:35:31,877 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 17 of 45

03 Sep 2021 16:35:32,968 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 18 of 45

03 Sep 2021 16:35:32,971 INFO : 80% Done

03 Sep 2021 16:35:34,073 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 19 of 45

03 Sep 2021 16:35:34,076 INFO : 81% Done

03 Sep 2021 16:35:35,195 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 20 of 45

03 Sep 2021 16:35:36,350 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 21 of 45

03 Sep 2021 16:35:36,353 INFO : 82% Done

03 Sep 2021 16:35:37,530 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 22 of 45

03 Sep 2021 16:35:37,533 INFO : 83% Done

03 Sep 2021 16:35:38,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 23 of 45

03 Sep 2021 16:35:39,974 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 24 of 45

03 Sep 2021 16:35:39,976 INFO : 84% Done

03 Sep 2021 16:35:41,174 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 25 of 45

03 Sep 2021 16:35:41,177 INFO : 85% Done

03 Sep 2021 16:35:42,442 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 26 of 45

03 Sep 2021 16:35:43,545 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 27 of 45

03 Sep 2021 16:35:43,548 INFO : 86% Done

03 Sep 2021 16:35:44,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 28 of 45

03 Sep 2021 16:35:44,798 INFO : 87% Done

03 Sep 2021 16:35:46,059 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 29 of 45

03 Sep 2021 16:35:47,469 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 30 of 45

03 Sep 2021 16:35:47,471 INFO : 88% Done

03 Sep 2021 16:35:48,563 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 31 of 45

03 Sep 2021 16:35:48,566 INFO : 89% Done

03 Sep 2021 16:35:49,658 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 32 of 45

03 Sep 2021 16:35:50,677 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 33 of 45

03 Sep 2021 16:35:50,680 INFO : 90% Done

03 Sep 2021 16:35:51,771 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 34 of 45

03 Sep 2021 16:35:51,774 INFO : 91% Done

03 Sep 2021 16:35:52,814 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 35 of 45

03 Sep 2021 16:35:53,983 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 36 of 45

03 Sep 2021 16:35:53,986 INFO : 92% Done

03 Sep 2021 16:35:55,074 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 37 of 45

03 Sep 2021 16:35:55,076 INFO : 93% Done

03 Sep 2021 16:35:56,161 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 38 of 45

03 Sep 2021 16:35:57,212 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 39 of 45

03 Sep 2021 16:35:57,215 INFO : 94% Done

03 Sep 2021 16:35:58,305 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 40 of 45

03 Sep 2021 16:35:58,308 INFO : 95% Done

03 Sep 2021 16:35:59,343 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 41 of 45

03 Sep 2021 16:36:00,434 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 42 of 45

03 Sep 2021 16:36:00,437 INFO : 96% Done

03 Sep 2021 16:36:01,468 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 43 of 45

03 Sep 2021 16:36:01,470 INFO : 97% Done

03 Sep 2021 16:36:02,793 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 44 of 45

03 Sep 2021 16:36:03,906 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 45 of 45

03 Sep 2021 16:36:03,908 INFO : 98% Done

03 Sep 2021 16:36:03,908 INFO : Done updating previously imported sample file data.

03 Sep 2021 16:36:04,623 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-09-03_10-58-05.sky.zip have been updated with newer data.

03 Sep 2021 16:36:04,624 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-09-03_10-58-05.sky.zip

03 Sep 2021 16:36:04,624 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-09-03_10-58-05

03 Sep 2021 16:36:04,624 INFO : Creating and populating temp tables for Proportion values

03 Sep 2021 16:36:04,656 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

03 Sep 2021 16:36:04,767 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

03 Sep 2021 16:36:04,804 INFO : Cleaning up temp tables

03 Sep 2021 16:36:05,108 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-09-03_19-35-02.sky.zip

03 Sep 2021 16:36:05,111 INFO : 100% Done

03 Sep 2021 16:36:05,162 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'