02 Jul 2021 12:41:05,438 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

02 Jul 2021 12:41:05,440 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-07-02_15-41-01.sky.zip

02 Jul 2021 12:41:05,440 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

02 Jul 2021 12:41:05,444 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

02 Jul 2021 12:41:05,712 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

02 Jul 2021 12:41:05,745 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

02 Jul 2021 12:41:05,751 INFO : 2% Done

02 Jul 2021 12:41:05,867 DEBUG: Starting to load chromatogram headers

02 Jul 2021 12:41:05,872 DEBUG: Done loading chromatogram headers

02 Jul 2021 12:41:05,981 INFO : Inserting Precursors_Mix_1

02 Jul 2021 12:41:05,990 INFO : 4% Done

02 Jul 2021 12:41:06,027 INFO : 7% Done

02 Jul 2021 12:41:06,057 INFO : 10% Done

02 Jul 2021 12:41:06,086 INFO : 12% Done

02 Jul 2021 12:41:06,116 INFO : 14% Done

02 Jul 2021 12:41:06,147 INFO : 17% Done

02 Jul 2021 12:41:06,178 INFO : 20% Done

02 Jul 2021 12:41:06,209 INFO : 22% Done

02 Jul 2021 12:41:06,239 INFO : 25% Done

02 Jul 2021 12:41:06,269 INFO : 28% Done

02 Jul 2021 12:41:06,300 INFO : 30% Done

02 Jul 2021 12:41:06,327 INFO : 32% Done

02 Jul 2021 12:41:06,354 INFO : 35% Done

02 Jul 2021 12:41:06,382 INFO : 38% Done

02 Jul 2021 12:41:06,416 INFO : 40% Done

02 Jul 2021 12:41:06,443 INFO : 43% Done

02 Jul 2021 12:41:06,469 INFO : 46% Done

02 Jul 2021 12:41:06,496 INFO : 48% Done

02 Jul 2021 12:41:06,523 INFO : 50% Done

02 Jul 2021 12:41:06,550 INFO : 53% Done

02 Jul 2021 12:41:06,577 INFO : 55% Done

02 Jul 2021 12:41:06,604 INFO : 58% Done

02 Jul 2021 12:41:06,633 INFO : 60% Done

02 Jul 2021 12:41:06,655 DEBUG: Total molecules inserted: 23

02 Jul 2021 12:41:06,656 INFO : Done parsing Skyline document.

02 Jul 2021 12:41:06,659 INFO : No group comparisons found.

02 Jul 2021 12:41:06,659 INFO : Calculating calibration curves

02 Jul 2021 12:41:06,660 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

02 Jul 2021 12:41:06,866 INFO : 68% Done

02 Jul 2021 12:41:06,871 INFO : Done calculating calibration curves.

02 Jul 2021 12:41:07,990 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 1 of 35

02 Jul 2021 12:41:07,993 INFO : 69% Done

02 Jul 2021 12:41:08,955 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 2 of 35

02 Jul 2021 12:41:08,957 INFO : 70% Done

02 Jul 2021 12:41:09,899 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 35

02 Jul 2021 12:41:09,901 INFO : 71% Done

02 Jul 2021 12:41:10,827 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 4 of 35

02 Jul 2021 12:41:11,727 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 35

02 Jul 2021 12:41:11,729 INFO : 72% Done

02 Jul 2021 12:41:12,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 35

02 Jul 2021 12:41:12,641 INFO : 73% Done

02 Jul 2021 12:41:13,540 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 7 of 35

02 Jul 2021 12:41:13,542 INFO : 74% Done

02 Jul 2021 12:41:14,477 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 8 of 35

02 Jul 2021 12:41:14,478 INFO : 75% Done

02 Jul 2021 12:41:15,392 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 9 of 35

02 Jul 2021 12:41:15,394 INFO : 76% Done

02 Jul 2021 12:41:16,324 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 10 of 35

02 Jul 2021 12:41:16,327 INFO : 77% Done

02 Jul 2021 12:41:17,223 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 11 of 35

02 Jul 2021 12:41:18,128 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 12 of 35

02 Jul 2021 12:41:18,130 INFO : 78% Done

02 Jul 2021 12:41:19,023 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 13 of 35

02 Jul 2021 12:41:19,025 INFO : 79% Done

02 Jul 2021 12:41:19,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 14 of 35

02 Jul 2021 12:41:19,937 INFO : 80% Done

02 Jul 2021 12:41:20,865 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 15 of 35

02 Jul 2021 12:41:20,867 INFO : 81% Done

02 Jul 2021 12:41:21,792 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 16 of 35

02 Jul 2021 12:41:21,793 INFO : 82% Done

02 Jul 2021 12:41:22,734 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 17 of 35

02 Jul 2021 12:41:22,735 INFO : 83% Done

02 Jul 2021 12:41:23,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 18 of 35

02 Jul 2021 12:41:24,620 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 19 of 35

02 Jul 2021 12:41:24,622 INFO : 84% Done

02 Jul 2021 12:41:25,555 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 20 of 35

02 Jul 2021 12:41:25,557 INFO : 85% Done

02 Jul 2021 12:41:26,472 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 21 of 35

02 Jul 2021 12:41:26,474 INFO : 86% Done

02 Jul 2021 12:41:27,378 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 22 of 35

02 Jul 2021 12:41:27,379 INFO : 87% Done

02 Jul 2021 12:41:28,281 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 23 of 35

02 Jul 2021 12:41:28,282 INFO : 88% Done

02 Jul 2021 12:41:29,169 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 24 of 35

02 Jul 2021 12:41:29,171 INFO : 89% Done

02 Jul 2021 12:41:30,075 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 25 of 35

02 Jul 2021 12:41:30,963 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 26 of 35

02 Jul 2021 12:41:30,964 INFO : 90% Done

02 Jul 2021 12:41:31,873 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 27 of 35

02 Jul 2021 12:41:31,874 INFO : 91% Done

02 Jul 2021 12:41:32,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 28 of 35

02 Jul 2021 12:41:32,747 INFO : 92% Done

02 Jul 2021 12:41:33,645 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 29 of 35

02 Jul 2021 12:41:33,646 INFO : 93% Done

02 Jul 2021 12:41:34,531 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 30 of 35

02 Jul 2021 12:41:34,532 INFO : 94% Done

02 Jul 2021 12:41:35,424 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 31 of 35

02 Jul 2021 12:41:35,425 INFO : 95% Done

02 Jul 2021 12:41:36,324 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 32 of 35

02 Jul 2021 12:41:37,234 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 33 of 35

02 Jul 2021 12:41:37,236 INFO : 96% Done

02 Jul 2021 12:41:38,130 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 34 of 35

02 Jul 2021 12:41:38,131 INFO : 97% Done

02 Jul 2021 12:41:39,010 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 35 of 35

02 Jul 2021 12:41:39,012 INFO : 98% Done

02 Jul 2021 12:41:39,012 INFO : Done updating previously imported sample file data.

02 Jul 2021 12:41:39,437 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-07-02_11-51-59.sky.zip have been updated with newer data.

02 Jul 2021 12:41:39,437 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-07-02_11-51-59.sky.zip

02 Jul 2021 12:41:39,437 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-07-02_11-51-59

02 Jul 2021 12:41:39,437 INFO : Creating and populating temp tables for Proportion values

02 Jul 2021 12:41:39,456 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Jul 2021 12:41:39,522 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Jul 2021 12:41:39,545 INFO : Cleaning up temp tables

02 Jul 2021 12:41:39,730 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-07-02_15-41-01.sky.zip

02 Jul 2021 12:41:39,732 INFO : 100% Done

02 Jul 2021 12:41:39,766 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'