24 Jun 2021 08:36:06,999 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
24 Jun 2021 08:36:07,001 INFO : Starting to import Skyline document from All_PRM_Splice_Assays_v20210624_2021-06-24_17-35-59.sky.zip
24 Jun 2021 08:36:07,001 INFO : Expanding Prosit_All_Splice_Peptides_20210624.blib
24 Jun 2021 08:36:07,006 INFO : Expanding All_PRM_Splice_Assays_v20210624.sky.view
24 Jun 2021 08:36:07,007 INFO : Expanding All_PRM_Splice_Assays_v20210624.sky
24 Jun 2021 08:36:07,010 INFO : Expanding All_PRM_Splice_Assays_v20210624.skyl
24 Jun 2021 08:36:07,013 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2
24 Jun 2021 08:36:07,016 INFO : 1% Done
24 Jun 2021 08:36:07,016 WARN : Unable to find file /data/labkey/files/U of Basel - Biozentrum Proteomics Core Facility/User - Publications/Scheiffele/P291_David_Hauser_20210624/Splice PRM Assays/@files/All_PRM_Splice_Assays_v20210624_2021-06-24_17-35-59/All_PRM_Splice_Assays_v20210624.skyd, unable to import chromatograms
24 Jun 2021 08:36:07,024 INFO : Inserting Q62108 Disks large homolog 4 - Dlg4 - pan/most forms
24 Jun 2021 08:36:07,027 INFO : 3% Done
24 Jun 2021 08:36:07,036 INFO : 4% Done
24 Jun 2021 08:36:07,044 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,044 INFO : Inserting O88737 Bassoon - Bsn - pan/most forms
24 Jun 2021 08:36:07,054 INFO : 6% Done
24 Jun 2021 08:36:07,063 INFO : 7% Done
24 Jun 2021 08:36:07,072 INFO : 8% Done
24 Jun 2021 08:36:07,079 DEBUG: Total peptides inserted: 4
24 Jun 2021 08:36:07,079 INFO : Inserting Q99K10 Neuroligin-1 - Nlgn1 - pan/most forms
24 Jun 2021 08:36:07,081 INFO : 10% Done
24 Jun 2021 08:36:07,090 INFO : 11% Done
24 Jun 2021 08:36:07,100 INFO : 12% Done
24 Jun 2021 08:36:07,109 INFO : 13% Done
24 Jun 2021 08:36:07,115 DEBUG: Total peptides inserted: 4
24 Jun 2021 08:36:07,115 INFO : Inserting Q69ZK9 Neuroligin-2 - Nlgn2 - pan/most forms
24 Jun 2021 08:36:07,116 INFO : 14% Done
24 Jun 2021 08:36:07,123 INFO : 16% Done
24 Jun 2021 08:36:07,128 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,128 INFO : Inserting Q8BYM5 Neuroligin-3 - Nlgn3 - pan/most forms
24 Jun 2021 08:36:07,130 INFO : 17% Done
24 Jun 2021 08:36:07,136 INFO : 18% Done
24 Jun 2021 08:36:07,142 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,142 INFO : Inserting P15209 BDNF/NT-3 growth factors receptor - Ntrk2 - pan/most forms
24 Jun 2021 08:36:07,144 INFO : 20% Done
24 Jun 2021 08:36:07,157 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,157 INFO : Inserting P35436 Glutamate receptor ionotropic, NMDA 2A - Grin2a - pan/most forms
24 Jun 2021 08:36:07,159 INFO : 21% Done
24 Jun 2021 08:36:07,166 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,166 INFO : Inserting Q01097 Glutamate receptor ionotropic, NMDA 2B - Grin2b - pan/most forms
24 Jun 2021 08:36:07,168 INFO : 23% Done
24 Jun 2021 08:36:07,176 INFO : 24% Done
24 Jun 2021 08:36:07,183 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,183 INFO : Inserting P35438 Glutamate receptor ionotropic, NMDA 1 - Grin1 - pan/most forms
24 Jun 2021 08:36:07,185 INFO : 25% Done
24 Jun 2021 08:36:07,193 INFO : 26% Done
24 Jun 2021 08:36:07,199 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,199 INFO : Inserting P62812 GABA(A) alpha-1 - Gabra1 - pan/most forms
24 Jun 2021 08:36:07,201 INFO : 27% Done
24 Jun 2021 08:36:07,212 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,212 INFO : Inserting P22723 GABA(A) gamma-2 - Gabrg2 - pan/most forms
24 Jun 2021 08:36:07,214 INFO : 29% Done
24 Jun 2021 08:36:07,220 INFO : 30% Done
24 Jun 2021 08:36:07,226 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,226 INFO : Inserting Q9WV18 GABA(B) - Gabbr1 - pan/most forms
24 Jun 2021 08:36:07,228 INFO : 31% Done
24 Jun 2021 08:36:07,234 INFO : 33% Done
24 Jun 2021 08:36:07,240 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,240 INFO : Inserting P32848 Parvalbumin - Pvalb - pan/most forms
24 Jun 2021 08:36:07,241 INFO : 34% Done
24 Jun 2021 08:36:07,247 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,247 INFO : Inserting P48318 Glutamate decarboxylase 1 - Gad1 - pan/most forms
24 Jun 2021 08:36:07,248 INFO : 35% Done
24 Jun 2021 08:36:07,254 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,254 INFO : Inserting P48320 Glutamate decarboxylase 2 - Gad2 - pan/most forms
24 Jun 2021 08:36:07,255 INFO : 36% Done
24 Jun 2021 08:36:07,261 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,261 INFO : Inserting O35633 Vesicular inhibitory amino acid transporter - VGAT - pan/most forms
24 Jun 2021 08:36:07,262 INFO : 37% Done
24 Jun 2021 08:36:07,268 INFO : 38% Done
24 Jun 2021 08:36:07,273 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,274 INFO : Inserting P20029 Endoplasmic reticulum chaperone BiP - Hspa5 - pan/most forms
24 Jun 2021 08:36:07,275 INFO : 40% Done
24 Jun 2021 08:36:07,280 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,280 INFO : Inserting P21237 Brain-derived neurotrophic factor - BDNF - pan/most forms
24 Jun 2021 08:36:07,282 INFO : 41% Done
24 Jun 2021 08:36:07,288 INFO : 43% Done
24 Jun 2021 08:36:07,301 INFO : 44% Done
24 Jun 2021 08:36:07,310 DEBUG: Total peptides inserted: 4
24 Jun 2021 08:36:07,310 INFO : Inserting Q8BUV3 Gephyrin - GEPH - pan/most forms
24 Jun 2021 08:36:07,312 INFO : 46% Done
24 Jun 2021 08:36:07,320 INFO : 47% Done
24 Jun 2021 08:36:07,327 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,327 INFO : Inserting Q9CS84 Neurexin-1 - Nrxn1 - pan/most forms
24 Jun 2021 08:36:07,329 INFO : 48% Done
24 Jun 2021 08:36:07,337 INFO : 50% Done
24 Jun 2021 08:36:07,342 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,342 INFO : Inserting Q9CS84 Neurexin-1 - Nrxn1 - alpha isoforms
24 Jun 2021 08:36:07,344 INFO : 51% Done
24 Jun 2021 08:36:07,350 INFO : 52% Done
24 Jun 2021 08:36:07,357 INFO : 53% Done
24 Jun 2021 08:36:07,364 DEBUG: Total peptides inserted: 3
24 Jun 2021 08:36:07,364 INFO : Inserting P0DI97 Neurexin-1 - Nrxn1 - beta isoforms
24 Jun 2021 08:36:07,366 INFO : 54% Done
24 Jun 2021 08:36:07,374 INFO : 56% Done
24 Jun 2021 08:36:07,382 INFO : 57% Done
24 Jun 2021 08:36:07,388 DEBUG: Total peptides inserted: 3
24 Jun 2021 08:36:07,388 INFO : Inserting E9Q7X7 Neurexin-2 - Nrxn2 - pan/most forms
24 Jun 2021 08:36:07,390 INFO : 58% Done
24 Jun 2021 08:36:07,397 INFO : 59% Done
24 Jun 2021 08:36:07,403 INFO : 60% Done
24 Jun 2021 08:36:07,410 INFO : 61% Done
24 Jun 2021 08:36:07,415 DEBUG: Total peptides inserted: 4
24 Jun 2021 08:36:07,415 INFO : Inserting E9Q7X7 Neurexin-2 - Nrxn2 - alpha isoforms
24 Jun 2021 08:36:07,416 INFO : 63% Done
24 Jun 2021 08:36:07,423 INFO : 64% Done
24 Jun 2021 08:36:07,429 INFO : 65% Done
24 Jun 2021 08:36:07,437 INFO : 66% Done
24 Jun 2021 08:36:07,446 INFO : 67% Done
24 Jun 2021 08:36:07,455 INFO : 68% Done
24 Jun 2021 08:36:07,463 DEBUG: Total peptides inserted: 6
24 Jun 2021 08:36:07,463 INFO : Inserting E9PUN2 Neurexin-2 - Nrxn2 - beta isoforms
24 Jun 2021 08:36:07,465 INFO : 70% Done
24 Jun 2021 08:36:07,472 INFO : 71% Done
24 Jun 2021 08:36:07,479 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,480 INFO : Inserting Q6P9K9 Neurexin-3 - Nrxn3 - pan/most forms
24 Jun 2021 08:36:07,482 INFO : 72% Done
24 Jun 2021 08:36:07,489 INFO : 74% Done
24 Jun 2021 08:36:07,494 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,494 INFO : Inserting Q6P9K9 Neurexin-3 - Nrxn3 - alpha isoforms
24 Jun 2021 08:36:07,506 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,507 INFO : 75% Done
24 Jun 2021 08:36:07,507 INFO : Inserting Q8C985 Neurexin-3 - Nrxn3 - beta isoforms
24 Jun 2021 08:36:07,509 INFO : 76% Done
24 Jun 2021 08:36:07,517 INFO : 77% Done
24 Jun 2021 08:36:07,523 INFO : 78% Done
24 Jun 2021 08:36:07,528 DEBUG: Total peptides inserted: 3
24 Jun 2021 08:36:07,529 INFO : 79% Done
24 Jun 2021 08:36:07,529 INFO : Inserting Q6P9K9; Q8C985; A0A5F8MPQ9 Neurexin-3 - Nrxn3 - AS5 ex25a
24 Jun 2021 08:36:07,531 INFO : 80% Done
24 Jun 2021 08:36:07,537 INFO : 81% Done
24 Jun 2021 08:36:07,542 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,542 INFO : Inserting Q6P9K9; Q8C985 Neurexin-3 - Nrxn3 - AS5 ex25b
24 Jun 2021 08:36:07,549 INFO : 83% Done
24 Jun 2021 08:36:07,555 INFO : 84% Done
24 Jun 2021 08:36:07,561 INFO : 85% Done
24 Jun 2021 08:36:07,566 DEBUG: Total peptides inserted: 4
24 Jun 2021 08:36:07,567 INFO : 86% Done
24 Jun 2021 08:36:07,567 INFO : Inserting Q6P9K9; Q8C985 Neurexin-3 - Nrxn3 - AS5 ex25c
24 Jun 2021 08:36:07,571 INFO : 87% Done
24 Jun 2021 08:36:07,575 INFO : 88% Done
24 Jun 2021 08:36:07,577 DEBUG: Total peptides inserted: 3
24 Jun 2021 08:36:07,577 INFO : Inserting Q9CS84 Neurexin-1 - Nrxn1 - AS3(+)
24 Jun 2021 08:36:07,579 INFO : 89% Done
24 Jun 2021 08:36:07,584 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,584 INFO : Inserting Q9CS84; P0DI97 Neurexin-1 - Nrxn1 - AS4(+)
24 Jun 2021 08:36:07,590 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,590 INFO : Inserting Q9CS84; H3BK41 Neurexin-1 - Nrxn1 - AS6(+)
24 Jun 2021 08:36:07,591 INFO : 91% Done
24 Jun 2021 08:36:07,596 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,596 INFO : Inserting E9Q7X7 Neurexin-2 - Nrxn2 - AS3(+)
24 Jun 2021 08:36:07,598 INFO : 92% Done
24 Jun 2021 08:36:07,603 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,603 INFO : Inserting E9Q7X7; E9PUN2 Neurexin-2 - Nrxn2 - AS4(+)
24 Jun 2021 08:36:07,604 INFO : 94% Done
24 Jun 2021 08:36:07,609 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,609 INFO : Inserting Q6P9K9 Neurexin-3 - Nrxn3 - AS3(+)
24 Jun 2021 08:36:07,610 INFO : 95% Done
24 Jun 2021 08:36:07,617 INFO : 96% Done
24 Jun 2021 08:36:07,622 DEBUG: Total peptides inserted: 2
24 Jun 2021 08:36:07,622 INFO : Inserting Q6P9K9; Q8C985 Neurexin-3 - Nrxn3 - AS4(+)
24 Jun 2021 08:36:07,623 INFO : 97% Done
24 Jun 2021 08:36:07,628 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,628 INFO : Inserting Q6P9K9; Q6P9K9-2 Neurexin-3 - Nrxn3 - AS6(+)
24 Jun 2021 08:36:07,630 INFO : 98% Done
24 Jun 2021 08:36:07,635 DEBUG: Total peptides inserted: 1
24 Jun 2021 08:36:07,635 INFO : Done parsing Skyline document.
24 Jun 2021 08:36:07,673 INFO : Creating and populating temp tables for Proportion values
24 Jun 2021 08:36:07,679 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Jun 2021 08:36:07,680 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Jun 2021 08:36:07,681 INFO : Cleaning up temp tables
24 Jun 2021 08:36:07,681 INFO : Completed import of Skyline document from All_PRM_Splice_Assays_v20210624_2021-06-24_17-35-59.sky.zip
24 Jun 2021 08:36:07,683 INFO : 100% Done
24 Jun 2021 08:36:07,727 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'