18 Mar 2021 07:24:27,184 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
18 Mar 2021 07:24:27,201 INFO : Starting to import Skyline document from DDR2_chromatogram1.sky.zip
18 Mar 2021 07:24:27,203 INFO : Expanding NCI56_CE_optim_Skyline_library_05312016.optdb
18 Mar 2021 07:24:27,239 INFO : Expanding Cons_all_FHCRC_Broad_Q3.blib
18 Mar 2021 07:24:27,244 INFO : Expanding DDR2_chromatogram1.skyd
18 Mar 2021 07:24:27,272 INFO : Expanding DDR2_chromatogram1.sky.view
18 Mar 2021 07:24:27,289 INFO : Expanding DDR2_chromatogram1.sky
18 Mar 2021 07:24:27,322 INFO : 2% Done
18 Mar 2021 07:24:27,339 DEBUG: Starting to load chromatogram headers
18 Mar 2021 07:24:27,340 DEBUG: Done loading chromatogram headers
18 Mar 2021 07:24:27,570 INFO : Inserting sp|O43561|LAT_HUMAN
18 Mar 2021 07:24:27,578 INFO : 3% Done
18 Mar 2021 07:24:27,779 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:27,783 INFO : 4% Done
18 Mar 2021 07:24:27,793 INFO : Inserting sp|O75417|DPOLQ_HUMAN
18 Mar 2021 07:24:27,827 INFO : 6% Done
18 Mar 2021 07:24:27,883 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:27,891 INFO : Inserting sp|O96013|PAK4_HUMAN
18 Mar 2021 07:24:27,897 INFO : 8% Done
18 Mar 2021 07:24:27,925 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:27,930 INFO : Inserting sp|O96017|CHK2_HUMAN
18 Mar 2021 07:24:27,936 INFO : 10% Done
18 Mar 2021 07:24:27,960 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,028 INFO : Inserting sp|P04406|G3P_HUMAN
18 Mar 2021 07:24:28,048 INFO : 12% Done
18 Mar 2021 07:24:28,089 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,094 INFO : Inserting sp|P04637|P53_HUMAN
18 Mar 2021 07:24:28,100 INFO : 14% Done
18 Mar 2021 07:24:28,139 INFO : 16% Done
18 Mar 2021 07:24:28,162 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:28,166 INFO : 17% Done
18 Mar 2021 07:24:28,170 INFO : Inserting sp|P06493|CDK1_HUMAN
18 Mar 2021 07:24:28,175 INFO : 18% Done
18 Mar 2021 07:24:28,204 INFO : 20% Done
18 Mar 2021 07:24:28,229 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:28,300 INFO : Inserting sp|P07437|TBB5_HUMAN
18 Mar 2021 07:24:28,338 INFO : 22% Done
18 Mar 2021 07:24:28,406 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,410 INFO : Inserting sp|P20700|LMNB1_HUMAN
18 Mar 2021 07:24:28,415 INFO : 24% Done
18 Mar 2021 07:24:28,449 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,454 INFO : Inserting sp|P30305|MPIP2_HUMAN
18 Mar 2021 07:24:28,459 INFO : 26% Done
18 Mar 2021 07:24:28,487 INFO : 28% Done
18 Mar 2021 07:24:28,512 INFO : 30% Done
18 Mar 2021 07:24:28,535 DEBUG: Total peptides inserted: 3
18 Mar 2021 07:24:28,539 INFO : Inserting sp|P42574|CASP3_HUMAN
18 Mar 2021 07:24:28,560 INFO : 32% Done
18 Mar 2021 07:24:28,588 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,592 INFO : 33% Done
18 Mar 2021 07:24:28,597 INFO : Inserting sp|P46013|KI67_HUMAN
18 Mar 2021 07:24:28,603 INFO : 34% Done
18 Mar 2021 07:24:28,655 INFO : 37% Done
18 Mar 2021 07:24:28,681 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:28,687 INFO : Inserting sp|P49959|MRE11_HUMAN
18 Mar 2021 07:24:28,692 INFO : 38% Done
18 Mar 2021 07:24:28,718 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,805 INFO : Inserting sp|P68133|ACTS_HUMAN
18 Mar 2021 07:24:28,855 INFO : 40% Done
18 Mar 2021 07:24:28,898 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,902 INFO : 41% Done
18 Mar 2021 07:24:28,906 INFO : Inserting sp|Q00987|MDM2_HUMAN
18 Mar 2021 07:24:28,911 INFO : 42% Done
18 Mar 2021 07:24:28,952 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:28,956 INFO : Inserting sp|Q02223|TNR17_HUMAN
18 Mar 2021 07:24:28,961 INFO : 44% Done
18 Mar 2021 07:24:28,985 INFO : 46% Done
18 Mar 2021 07:24:29,006 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:29,010 INFO : Inserting sp|Q12888|TP53B_HUMAN
18 Mar 2021 07:24:29,015 INFO : 49% Done
18 Mar 2021 07:24:29,037 INFO : 50% Done
18 Mar 2021 07:24:29,063 INFO : 52% Done
18 Mar 2021 07:24:29,082 DEBUG: Total peptides inserted: 3
18 Mar 2021 07:24:29,085 INFO : 53% Done
18 Mar 2021 07:24:29,089 INFO : Inserting sp|Q14566|MCM6_HUMAN
18 Mar 2021 07:24:29,094 INFO : 54% Done
18 Mar 2021 07:24:29,119 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,123 INFO : 55% Done
18 Mar 2021 07:24:29,127 INFO : Inserting sp|Q14980|NUMA1_HUMAN
18 Mar 2021 07:24:29,131 INFO : 58% Done
18 Mar 2021 07:24:29,170 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,174 INFO : Inserting sp|Q53HL2|BOREA_HUMAN
18 Mar 2021 07:24:29,179 INFO : 59% Done
18 Mar 2021 07:24:29,202 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,206 INFO : 60% Done
18 Mar 2021 07:24:29,210 INFO : Inserting sp|Q6IBW4|CNDH2_HUMAN
18 Mar 2021 07:24:29,214 INFO : 62% Done
18 Mar 2021 07:24:29,238 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,243 INFO : Inserting sp|Q8NG31|CASC5_HUMAN
18 Mar 2021 07:24:29,247 INFO : 64% Done
18 Mar 2021 07:24:29,269 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,273 INFO : Inserting sp|Q92541|RTF1_HUMAN
18 Mar 2021 07:24:29,280 INFO : 66% Done
18 Mar 2021 07:24:29,305 INFO : 68% Done
18 Mar 2021 07:24:29,327 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:29,331 INFO : Inserting sp|Q92878|RAD50_HUMAN
18 Mar 2021 07:24:29,336 INFO : 70% Done
18 Mar 2021 07:24:29,355 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,359 INFO : Inserting sp|Q96ER3|SAAL1_HUMAN
18 Mar 2021 07:24:29,364 INFO : 72% Done
18 Mar 2021 07:24:29,392 INFO : 74% Done
18 Mar 2021 07:24:29,419 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:29,424 INFO : Inserting sp|Q99638|RAD9A_HUMAN
18 Mar 2021 07:24:29,429 INFO : 76% Done
18 Mar 2021 07:24:29,453 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:24:29,458 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN
18 Mar 2021 07:24:29,462 INFO : 78% Done
18 Mar 2021 07:24:29,520 INFO : 80% Done
18 Mar 2021 07:24:29,550 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:24:29,552 INFO : Done parsing Skyline document.
18 Mar 2021 07:24:39,953 INFO : No group comparisons found.
18 Mar 2021 07:24:39,954 INFO : Calculating calibration curves
18 Mar 2021 07:24:39,957 DEBUG: Calculating calibration curve for sp|Q9BVJ6|UT14A_HUMAN, 1 of 27
18 Mar 2021 07:24:40,011 INFO : 81% Done
18 Mar 2021 07:24:40,012 DEBUG: Calculating calibration curve for sp|Q99638|RAD9A_HUMAN, 2 of 27
18 Mar 2021 07:24:40,033 DEBUG: Calculating calibration curve for sp|Q96ER3|SAAL1_HUMAN, 3 of 27
18 Mar 2021 07:24:40,074 INFO : 82% Done
18 Mar 2021 07:24:40,075 DEBUG: Calculating calibration curve for sp|Q92878|RAD50_HUMAN, 4 of 27
18 Mar 2021 07:24:40,096 INFO : 83% Done
18 Mar 2021 07:24:40,097 DEBUG: Calculating calibration curve for sp|Q92541|RTF1_HUMAN, 5 of 27
18 Mar 2021 07:24:40,135 DEBUG: Calculating calibration curve for sp|Q8NG31|CASC5_HUMAN, 6 of 27
18 Mar 2021 07:24:40,158 INFO : 84% Done
18 Mar 2021 07:24:40,158 DEBUG: Calculating calibration curve for sp|Q6IBW4|CNDH2_HUMAN, 7 of 27
18 Mar 2021 07:24:40,181 INFO : 85% Done
18 Mar 2021 07:24:40,182 DEBUG: Calculating calibration curve for sp|Q53HL2|BOREA_HUMAN, 8 of 27
18 Mar 2021 07:24:40,202 DEBUG: Calculating calibration curve for sp|Q14980|NUMA1_HUMAN, 9 of 27
18 Mar 2021 07:24:40,224 INFO : 86% Done
18 Mar 2021 07:24:40,225 DEBUG: Calculating calibration curve for sp|Q14566|MCM6_HUMAN, 10 of 27
18 Mar 2021 07:24:40,248 INFO : 87% Done
18 Mar 2021 07:24:40,249 DEBUG: Calculating calibration curve for sp|Q12888|TP53B_HUMAN, 11 of 27
18 Mar 2021 07:24:40,304 DEBUG: Calculating calibration curve for sp|Q02223|TNR17_HUMAN, 12 of 27
18 Mar 2021 07:24:40,345 INFO : 88% Done
18 Mar 2021 07:24:40,346 DEBUG: Calculating calibration curve for sp|Q00987|MDM2_HUMAN, 13 of 27
18 Mar 2021 07:24:40,370 INFO : 89% Done
18 Mar 2021 07:24:40,371 DEBUG: Calculating calibration curve for sp|P68133|ACTS_HUMAN, 14 of 27
18 Mar 2021 07:24:40,388 DEBUG: Calculating calibration curve for sp|P49959|MRE11_HUMAN, 15 of 27
18 Mar 2021 07:24:40,411 INFO : 90% Done
18 Mar 2021 07:24:40,412 DEBUG: Calculating calibration curve for sp|P46013|KI67_HUMAN, 16 of 27
18 Mar 2021 07:24:40,456 INFO : 91% Done
18 Mar 2021 07:24:40,456 DEBUG: Calculating calibration curve for sp|P42574|CASP3_HUMAN, 17 of 27
18 Mar 2021 07:24:40,477 DEBUG: Calculating calibration curve for sp|P30305|MPIP2_HUMAN, 18 of 27
18 Mar 2021 07:24:40,537 INFO : 92% Done
18 Mar 2021 07:24:40,538 DEBUG: Calculating calibration curve for sp|P20700|LMNB1_HUMAN, 19 of 27
18 Mar 2021 07:24:40,559 INFO : 93% Done
18 Mar 2021 07:24:40,559 DEBUG: Calculating calibration curve for sp|P07437|TBB5_HUMAN, 20 of 27
18 Mar 2021 07:24:40,577 DEBUG: Calculating calibration curve for sp|P06493|CDK1_HUMAN, 21 of 27
18 Mar 2021 07:24:40,618 INFO : 94% Done
18 Mar 2021 07:24:40,618 DEBUG: Calculating calibration curve for sp|P04637|P53_HUMAN, 22 of 27
18 Mar 2021 07:24:40,661 INFO : 95% Done
18 Mar 2021 07:24:40,662 DEBUG: Calculating calibration curve for sp|P04406|G3P_HUMAN, 23 of 27
18 Mar 2021 07:24:40,683 DEBUG: Calculating calibration curve for sp|O96017|CHK2_HUMAN, 24 of 27
18 Mar 2021 07:24:40,704 INFO : 96% Done
18 Mar 2021 07:24:40,705 DEBUG: Calculating calibration curve for sp|O96013|PAK4_HUMAN, 25 of 27
18 Mar 2021 07:24:40,727 INFO : 97% Done
18 Mar 2021 07:24:40,728 DEBUG: Calculating calibration curve for sp|O75417|DPOLQ_HUMAN, 26 of 27
18 Mar 2021 07:24:40,748 DEBUG: Calculating calibration curve for sp|O43561|LAT_HUMAN, 27 of 27
18 Mar 2021 07:24:40,770 INFO : 98% Done
18 Mar 2021 07:24:40,785 INFO : Done calculating calibration curves.
18 Mar 2021 07:24:40,864 INFO : Creating and populating temp tables for Proportion values
18 Mar 2021 07:24:40,878 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Mar 2021 07:24:40,908 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Mar 2021 07:24:40,917 INFO : Cleaning up temp tables
18 Mar 2021 07:24:41,378 INFO : Completed import of Skyline document from DDR2_chromatogram1.sky.zip
18 Mar 2021 07:24:41,383 INFO : 100% Done
18 Mar 2021 07:24:41,498 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'