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Running LINCS pipeline for: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10

P100_GctMaker

Job Status

Created: 2021-01-24 12:12:43
Modified: 2021-01-24 12:33:41
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_2021-01-24_12-12-42.log
Files: LincsPSP_LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_2021-01-24_12-12-42.log
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Log File


24 Jan 2021 12:12:43,071 INFO : Running LINCS pipeline for:  LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
24 Jan 2021 12:12:43,089 INFO : =======================================
24 Jan 2021 12:16:10,229 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:16:10,233 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.sky.zip
24 Jan 2021 12:16:10,299 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:16:10,319 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/8a90ed99-9f1d-4330-92e0-8a518fc6a0c4/status
24 Jan 2021 12:16:30,330 INFO : Cromwell job status: Running
24 Jan 2021 12:17:10,358 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:17:10,367 INFO : Cromwell job completed successfully
24 Jan 2021 12:17:10,369 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:32:59,918 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:32:59,928 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
24 Jan 2021 12:32:59,929 INFO : Submitting job for runId: 98890, name: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
24 Jan 2021 12:32:59,931 INFO : Looking for existing job with name LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_p100_gctmaker
24 Jan 2021 12:33:00,091 INFO : PSP job name: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_p100_gctmaker
24 Jan 2021 12:33:00,092 INFO : Sending JSON:
24 Jan 2021 12:33:00,093 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL3.gct"
  }}
}
24 Jan 2021 12:33:00,094 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:33:00,310 INFO : Response code - 200
24 Jan 2021 12:33:00,311 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600dd97ca1b42e001124f44e","created":"2021-01-24T20:33:00.168Z","last_modified":"2021-01-24T20:33:00.168Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.cfg"}}}
24 Jan 2021 12:33:00,312 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:33:00,314 INFO : Checking status of job 600dd97ca1b42e001124f44e
24 Jan 2021 12:33:00,444 INFO : Status: Waiting_To_Download
24 Jan 2021 12:33:20,446 INFO : Checking status of job 600dd97ca1b42e001124f44e
24 Jan 2021 12:33:20,809 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:33:40,813 INFO : Checking status of job 600dd97ca1b42e001124f44e
24 Jan 2021 12:33:41,100 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:33:41,101 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:33:41,102 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:33:41,102 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'