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Running LINCS pipeline for: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26

P100_GctMaker

Job Status

Created: 2021-01-24 06:58:54
Modified: 2021-01-24 07:55:40
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2021-01-24_06-58-53.log
Files: LincsPSP_LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_2021-01-24_06-58-53.log
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Log File


24 Jan 2021 06:58:53,937 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26
24 Jan 2021 06:58:53,982 INFO : =======================================
24 Jan 2021 07:12:16,173 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:12:16,192 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.sky.zip
24 Jan 2021 07:12:16,281 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:12:16,299 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/3b78a7df-4760-4ca5-9607-bba4c6bbf79c/status
24 Jan 2021 07:12:36,325 INFO : Cromwell job status: Running
24 Jan 2021 07:13:36,364 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:13:36,365 INFO : Cromwell job completed successfully
24 Jan 2021 07:13:36,367 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 07:54:59,374 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 07:54:59,399 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26
24 Jan 2021 07:54:59,400 INFO : Submitting job for runId: 98884, name: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26
24 Jan 2021 07:54:59,403 INFO : Looking for existing job with name LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_p100_gctmaker
24 Jan 2021 07:54:59,532 INFO : PSP job name: LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_p100_gctmaker
24 Jan 2021 07:54:59,534 INFO : Sending JSON:
24 Jan 2021 07:54:59,535 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL3.gct"
  }}
}
24 Jan 2021 07:54:59,536 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 07:54:59,715 INFO : Response code - 200
24 Jan 2021 07:54:59,717 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d9853a1b42e001124f439","created":"2021-01-24T15:54:59.609Z","last_modified":"2021-01-24T15:54:59.609Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate63a_annotated_minimized_2019-11-14_15-28-26.cfg"}}}
24 Jan 2021 07:54:59,718 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 07:54:59,720 INFO : Checking status of job 600d9853a1b42e001124f439
24 Jan 2021 07:54:59,852 INFO : Status: Waiting_To_Download
24 Jan 2021 07:55:19,856 INFO : Checking status of job 600d9853a1b42e001124f439
24 Jan 2021 07:55:20,140 INFO : Status: created LVL 3 GCT
24 Jan 2021 07:55:40,143 INFO : Checking status of job 600d9853a1b42e001124f439
24 Jan 2021 07:55:40,437 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:55:40,631 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:55:40,632 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 07:55:40,633 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'