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Running LINCS pipeline for: LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24

P100_GctMaker

Job Status

Created: 2021-01-24 06:58:17
Modified: 2021-01-24 07:32:04
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_2021-01-24_06-58-16.log
Files: LincsPSP_LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_2021-01-24_06-58-16.log
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Log File


24 Jan 2021 06:58:16,970 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24
24 Jan 2021 06:58:17,000 INFO : =======================================
24 Jan 2021 07:06:15,105 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:06:15,135 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24.sky.zip
24 Jan 2021 07:06:15,257 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:06:15,281 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/bb13b893-c253-4880-844f-f8379cd5c2fc/status
24 Jan 2021 07:06:35,294 INFO : Cromwell job status: Running
24 Jan 2021 07:07:55,345 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:07:55,346 INFO : Cromwell job completed successfully
24 Jan 2021 07:07:55,348 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 07:26:58,565 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 07:26:58,601 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24
24 Jan 2021 07:26:58,602 INFO : Submitting job for runId: 98888, name: LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24
24 Jan 2021 07:26:58,604 INFO : Looking for existing job with name LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_p100_gctmaker
24 Jan 2021 07:26:58,956 INFO : PSP job name: LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_p100_gctmaker
24 Jan 2021 07:26:58,957 INFO : Sending JSON:
24 Jan 2021 07:26:58,957 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_LVL3.gct"
  }}
}
24 Jan 2021 07:26:58,958 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 07:26:59,209 INFO : Response code - 200
24 Jan 2021 07:26:59,209 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d91c31dd2560011c085ff","created":"2021-01-24T15:26:59.033Z","last_modified":"2021-01-24T15:26:59.033Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate67_annotated_minimized_2018-08-02_13-56-24.cfg"}}}
24 Jan 2021 07:26:59,210 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 07:26:59,212 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:26:59,341 INFO : Status: Waiting_To_Download
24 Jan 2021 07:27:19,345 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:27:19,633 INFO : Status: created LVL2 GCT
24 Jan 2021 07:27:39,637 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:27:39,930 INFO : Status: created LVL2 GCT
24 Jan 2021 07:27:59,934 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:28:00,226 INFO : Status: created LVL2 GCT
24 Jan 2021 07:28:20,229 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:28:20,595 INFO : Status: created LVL2 GCT
24 Jan 2021 07:28:40,599 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:28:40,886 INFO : Status: created LVL2 GCT
24 Jan 2021 07:29:00,889 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:29:01,168 INFO : Status: created LVL2 GCT
24 Jan 2021 07:29:21,172 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:29:21,453 INFO : Status: created LVL2 GCT
24 Jan 2021 07:29:41,456 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:29:41,828 INFO : Status: created LVL2 GCT
24 Jan 2021 07:30:01,832 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:30:02,271 INFO : Status: created LVL2 GCT
24 Jan 2021 07:30:22,274 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:30:22,561 INFO : Status: created LVL2 GCT
24 Jan 2021 07:30:42,564 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:30:42,851 INFO : Status: created LVL2 GCT
24 Jan 2021 07:31:02,855 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:31:03,236 INFO : Status: created LVL2 GCT
24 Jan 2021 07:31:23,240 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:31:23,534 INFO : Status: created LVL2 GCT
24 Jan 2021 07:31:43,538 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:31:43,915 INFO : Status: created LVL 3 GCT
24 Jan 2021 07:32:03,918 INFO : Checking status of job 600d91c31dd2560011c085ff
24 Jan 2021 07:32:04,206 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:32:04,207 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:32:04,207 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 07:32:04,208 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'