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Running LINCS pipeline on PSP for: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42

GCP

Job Status

Created: 2019-11-22 11:21:16
Modified: 2020-06-01 17:07:59
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP/@files/LincsPSP_LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2019-11-22_11-21-16.log
Files: LincsPSP_LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2019-11-22_11-21-16.log
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Log File


22 Nov 2019 11:21:16,309 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
22 Nov 2019 11:21:16,310 INFO : =======================================
22 Nov 2019 11:26:45,204 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
22 Nov 2019 11:26:45,204 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
22 Nov 2019 11:26:45,204 INFO : Submitting job for runId: 78682, name: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
22 Nov 2019 11:26:45,207 INFO : Looking for existing job with name LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
22 Nov 2019 11:26:45,321 INFO : Job with name LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42exists.
22 Nov 2019 11:26:45,321 INFO : Looking for existing job with name LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2
22 Nov 2019 11:26:45,436 INFO : PSP job name: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2
22 Nov 2019 11:26:45,437 INFO : Sending JSON:
22 Nov 2019 11:26:45,437 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=78682&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL3.gct"
  }}
}
22 Nov 2019 11:26:45,438 INFO : Sending POST request to https://api.clue.io/api/psp
22 Nov 2019 11:26:45,699 INFO : Response code - 200
22 Nov 2019 11:26:45,700 INFO : Response from server: {"name":"LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2","assay":"GCP","status":"Waiting_To_Download","id":"5dd836756174be001904480a","created":"2019-11-22T19:26:45.500Z","last_modified":"2019-11-22T19:26:45.500Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=78682&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42.cfg"}}}
22 Nov 2019 11:26:45,700 INFO : Sent POST request to https://api.clue.io/api/psp
22 Nov 2019 11:26:45,702 INFO : Checking status of job 5dd836756174be001904480a
22 Nov 2019 11:26:45,819 INFO : Status: Waiting_To_Download
22 Nov 2019 11:27:05,820 INFO : Checking status of job 5dd836756174be001904480a
22 Nov 2019 11:27:06,094 INFO : Status: created LVL 3 GCT
22 Nov 2019 11:27:26,094 INFO : Checking status of job 5dd836756174be001904480a
22 Nov 2019 11:27:26,448 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
22 Nov 2019 11:27:26,448 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
22 Nov 2019 11:27:26,449 INFO : Finished running LINCS PSP pipeline.
22 Nov 2019 11:27:26,449 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'