27 Oct 2015 15:59:59,842 INFO : Copying experiment "Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry." from folder /Cedars-Sinai Van Eyk Lab/CiRT_Peptides to /Panorama Public/2015/Parker - CiRT_Peptides

27 Oct 2015 15:59:59,842 INFO : =======================================

27 Oct 2015 15:59:59,929 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

27 Oct 2015 15:59:59,931 INFO : 

27 Oct 2015 15:59:59,931 INFO : Exporting experiment.

27 Oct 2015 16:00:08,177 INFO : 

27 Oct 2015 16:00:08,177 INFO : Experiment export completed successfully.

27 Oct 2015 16:00:08,177 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

27 Oct 2015 16:00:08,196 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

27 Oct 2015 16:00:08,196 INFO : 

27 Oct 2015 16:00:08,196 INFO : Importing experiment.

27 Oct 2015 16:00:08,196 WARN : Import of groups outside of project context not supported.

27 Oct 2015 16:00:08,202 INFO : Loading folder properties (folder type, settings and active modules)

27 Oct 2015 16:00:08,285 INFO : Done importing folder properties (folder type, settings and active modules)

27 Oct 2015 16:00:08,290 INFO : Done importing container specific module properties

27 Oct 2015 16:00:08,295 INFO : Loading wikis

27 Oct 2015 16:00:08,443 INFO : 1 wiki imported

27 Oct 2015 16:00:08,443 INFO : Done importing wikis

27 Oct 2015 16:00:08,451 INFO : Loading xar

27 Oct 2015 16:00:08,472 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1549:TargetedMS.ImportSkyZip'

27 Oct 2015 16:00:08,480 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1549:TargetedMS.ImportSkyZip.Core'

27 Oct 2015 16:00:08,487 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1549:TargetedMS.ImportSkyZip.Output'

27 Oct 2015 16:00:08,487 DEBUG: Protocol import complete

27 Oct 2015 16:00:08,504 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-1549:Identification+of+a+Set+of+Conserved+Eukaryotic+Internal+Retention+Time+Standards+for+Data-independent+Acquisition+Mass+Spectrometry.'

27 Oct 2015 16:00:08,504 DEBUG: Experiment/Run group import complete

27 Oct 2015 16:00:08,764 DEBUG: Protocol action set import complete

27 Oct 2015 16:00:08,812 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1549:TargetedMS.ImportSkyZip'

27 Oct 2015 16:00:08,916 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1549:563422da-5f16-1033-97ff-3013bb9b8581'

27 Oct 2015 16:00:08,917 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1549:TargetedMS.ImportSkyZip.Core'

27 Oct 2015 16:00:08,922 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1549:TargetedMS.ImportSkyZip.Output'

27 Oct 2015 16:00:08,924 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1549:563422ee-5f16-1033-97ff-3013bb9b8581'

27 Oct 2015 16:00:08,926 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Parker%20-%20CiRT_Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run3234/CiRT_SW_2015-10-27_13-23-58.sky.zip into the system

27 Oct 2015 16:00:08,928 INFO : Starting import from CiRT_SW_2015-10-27_13-23-58.sky.zip

27 Oct 2015 16:00:08,940 INFO : Starting to import Skyline document from CiRT_SW_2015-10-27_13-23-58.sky.zip

27 Oct 2015 16:00:08,941 INFO : Expanding CiRT_SW-assay.blib

27 Oct 2015 16:00:08,941 INFO : Expanding CiRT_SW.sky.view

27 Oct 2015 16:00:08,942 INFO : Expanding CiRT_SW.sky

27 Oct 2015 16:00:08,944 WARN : The version of this Skyline document is 3.12. This is newer than the highest supported version 2.62

27 Oct 2015 16:00:08,946 WARN : Unable to find file /data/labkey/files/Panorama Public/2015/Parker - CiRT_Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run3234/CiRT_SW_2015-10-27_13-23-58/CiRT_SW.skyd, unable to import chromatograms

27 Oct 2015 16:00:09,199 INFO : Inserting 1/sp|cRAP_TRYP_PIG|cRAP_TRYP_PIG

27 Oct 2015 16:00:09,218 INFO : Inserting 1/sp|P60010|ACT_YEAST

27 Oct 2015 16:00:09,250 INFO : Inserting 2/sp|P32835|GSP1_YEAST/sp|P32836|GSP2_YEAST

27 Oct 2015 16:00:09,269 INFO : Inserting 2/sp|P09435|HSP73_YEAST/sp|P22202|HSP74_YEAST

27 Oct 2015 16:00:09,279 INFO : Inserting 3/sp|P09435|HSP73_YEAST/sp|P10591|HSP71_YEAST/sp|P10592|HSP72_YEAST

27 Oct 2015 16:00:09,288 INFO : Inserting 2/sp|P02829|HSP82_YEAST/sp|P15108|HSC82_YEAST

27 Oct 2015 16:00:09,297 INFO : Inserting 1/sp|P35979|RL12_MOUSE

27 Oct 2015 16:00:09,307 INFO : Inserting 7/sp|P68254|1433T_MOUSE/sp|O70456|1433S_MOUSE/sp|P61982|1433G_MOUSE/sp|P68510|1433F_MOUSE/sp|P62259|1433E_MOUSE/sp|Q9CQV8|1433B_MOUSE/sp|P63101|1433Z_MOUSE

27 Oct 2015 16:00:09,315 INFO : Inserting 3/sp|Q3V132|ADT4_MOUSE/sp|P51881|ADT2_MOUSE/sp|P48962|ADT1_MOUSE

27 Oct 2015 16:00:09,328 INFO : Completed import of Skyline document from CiRT_SW_2015-10-27_13-23-58.sky.zip

27 Oct 2015 16:00:09,335 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Parker%20-%20CiRT_Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run3234/CiRT_SW_2015-10-27_13-23-58.sky.zip into the system

27 Oct 2015 16:00:09,335 INFO : Done importing xar

27 Oct 2015 16:00:09,341 INFO : Loading pages and webpart properties

27 Oct 2015 16:00:09,384 INFO : Done importing pages and webpart properties

27 Oct 2015 16:00:09,384 INFO : 

27 Oct 2015 16:00:09,384 INFO : Experiment import completed successfully.

27 Oct 2015 16:00:09,384 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

27 Oct 2015 16:00:09,400 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

27 Oct 2015 16:00:09,400 INFO : 

27 Oct 2015 16:00:09,400 INFO : Finishing up experiment copy.

27 Oct 2015 16:00:09,404 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

27 Oct 2015 16:00:09,432 INFO : Updating access URL to point to the new copy of the data.

27 Oct 2015 16:00:09,469 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'