11 Sep 2025 13:03:37,335 DEBUG: Resetting Job ID: 40fe762c-7178-103e-8e6e-1cc91aa98000
11 Sep 2025 13:03:37,349 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
11 Sep 2025 13:03:37,350 INFO : Starting to import Skyline document from Buffers_digest_2025-09-11_13-03-17.sky.zip
11 Sep 2025 13:03:37,350 INFO : Expanding Buffers_digest.skyd
11 Sep 2025 13:03:37,357 INFO : Expanding Buffers_digest.sky.view
11 Sep 2025 13:03:37,357 INFO : Expanding Buffers_digest.sky
11 Sep 2025 13:03:37,359 INFO : Expanding Buffers_digest.skyl
11 Sep 2025 13:03:37,360 INFO : Reading Skyline file, Buffers_digest.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 13:03:37,362 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 13:03:37,362 WARN : The version of this Skyline document is 25.1. This is newer than the highest supported version 23.1
11 Sep 2025 13:03:37,363 INFO : 4% Done
11 Sep 2025 13:03:37,363 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 13:03:37,366 INFO : Copying complete
11 Sep 2025 13:03:37,366 DEBUG: Starting to load chromatogram headers
11 Sep 2025 13:03:37,366 DEBUG: Done loading chromatogram headers
11 Sep 2025 13:03:37,676 INFO : Deleted temp copy of SKYD file
11 Sep 2025 13:03:37,677 ERROR: Import failed
org.labkey.api.query.RuntimeValidationException: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
at org.labkey.api.data.Table.insert(Table.java:855)
at org.labkey.targetedms.SkylineDocImporter.insertDigestSettings(SkylineDocImporter.java:814)
at org.labkey.targetedms.SkylineDocImporter.insertPeptideSettings(SkylineDocImporter.java:768)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:356)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:249)
at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:63)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:830)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1078)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1535.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
at org.labkey.api.query.RuntimeValidationException.<init>(RuntimeValidationException.java:38)
... 29 more
11 Sep 2025 13:03:37,701 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'
11 Sep 2025 13:03:37,701 ERROR: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
org.labkey.api.pipeline.PipelineJobException: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:276)
at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:63)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:830)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1078)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1535.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: org.labkey.api.query.RuntimeValidationException: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
at org.labkey.api.data.Table.insert(Table.java:855)
at org.labkey.targetedms.SkylineDocImporter.insertDigestSettings(SkylineDocImporter.java:814)
at org.labkey.targetedms.SkylineDocImporter.insertPeptideSettings(SkylineDocImporter.java:768)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:356)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:249)
... 24 more
Caused by: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
at org.labkey.api.query.RuntimeValidationException.<init>(RuntimeValidationException.java:38)
... 29 more