Protocol: Skyline Document Import: /Panorama Public/2025/MacCoss - Casanovo 5.0

Protocol: Skyline Document Import

MacCoss - Casanovo 5.0

Standard Properties

Name	Skyline Document Import
Contact
Instrument
Software
Description
Max input data per instance
Max input material per instance	0
Output data per instance
Output material per instance

Protocol Parameters

ApplicationLSIDTemplate	${RunLSIDBase}:SimpleProtocol.InputStep
ApplicationName	Skyline Document Import Protocol

Protocol Details

Material Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Material Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Protocol Steps

Step	Name	Description
1	Skyline Document Import
10	Skyline Document Import - Core
20	Skyline Document Import - Output

Runs Using This Protocol

Select All Select None Show Selected Show Unselected Show All	Flag Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart		Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created By Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Protocol Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Run Groups Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
			hela_2025-07-21_15-14-01.sky.zip	2025-07-23 10:27:10	Vagisha Sharma	Skyline Document Import	Improvements to Casanovo, a deep learning de novo peptide sequencer
			mouse_2025-07-21_15-13-32.sky.zip	2025-07-23 10:27:10	Vagisha Sharma	Skyline Document Import	Improvements to Casanovo, a deep learning de novo peptide sequencer
			yeast_2025-07-21_15-12-08.sky.zip	2025-07-23 10:27:10	Vagisha Sharma	Skyline Document Import	Improvements to Casanovo, a deep learning de novo peptide sequencer