Protocol: Skyline Document Import: /Panorama Public/2025/MacCoss - Stellar highly multiplex fluid assays

Protocol: Skyline Document Import

MacCoss - Stellar highly multiplex fluid assays

Standard Properties

Name	Skyline Document Import
Contact
Instrument
Software
Description
Max input data per instance
Max input material per instance	0
Output data per instance
Output material per instance

Protocol Parameters

ApplicationLSIDTemplate	${RunLSIDBase}:SimpleProtocol.InputStep
ApplicationName	Skyline Document Import Protocol

Protocol Details

Material Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Material Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Protocol Steps

Step	Name	Description
1	Skyline Document Import
10	Skyline Document Import - Core
20	Skyline Document Import - Output

Runs Using This Protocol

Select All Select None Show Selected Show Unselected Show All	Flag Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart		Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created By Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Protocol Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Run Groups Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
			Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			2024-05 CSF LIT GPF-MSFragger-3.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			240207_gpf_2024-06-04_10-24-18.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer
			LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip	2025-06-25 18:12:20	Vagisha Sharma	Skyline Document Import	Development of highly multiplex targeted proteomics assays in biofluids using a nominal mass ion trap mass spectrometer