25 Apr 2025 12:01:02,218 INFO : Copying experiment "Identification of peptide isoforms in gS-crystallin using stable isotope labeled peptides" from folder /OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens to /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens
25 Apr 2025 12:01:02,218 INFO : =======================================
25 Apr 2025 12:01:02,233 DEBUG: Resetting Job ID: 4461eff2-0435-103e-9c0d-1cc91aa94300
25 Apr 2025 12:05:04,125 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
25 Apr 2025 12:05:04,125 INFO :
25 Apr 2025 12:05:04,125 INFO : Exporting experiment.
25 Apr 2025 12:05:12,547 INFO : Exporting files metadata.
25 Apr 2025 12:05:12,547 DEBUG: [/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens] Writing files metadata to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export
25 Apr 2025 12:05:12,549 DEBUG: [/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens] Writing files metadata to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:12,554 DEBUG: [/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards] Writing files metadata to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:12,569 DEBUG: [/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18] Writing files metadata to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:12,572 INFO :
25 Apr 2025 12:05:12,572 INFO : Experiment export completed successfully.
25 Apr 2025 12:05:12,572 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
25 Apr 2025 12:05:12,590 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
25 Apr 2025 12:05:12,590 INFO :
25 Apr 2025 12:05:12,590 INFO : Importing experiment.
25 Apr 2025 12:05:12,591 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens] Importing folder properties from: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export
25 Apr 2025 12:05:12,592 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:12,592 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens] Folder type: Targeted MS
25 Apr 2025 12:05:12,592 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens] Active modules: TargetedMS, Query, PanoramaPublic, FileContent, Search, Protein, Core, Issues, Experiment, Pipeline, Wiki, Announcements, API
25 Apr 2025 12:05:12,626 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:12,627 INFO : Loading container specific module properties
25 Apr 2025 12:05:12,633 INFO : Done importing container specific module properties
25 Apr 2025 12:05:12,634 INFO : Loading queries
25 Apr 2025 12:05:12,636 INFO : 1 query imported
25 Apr 2025 12:05:12,636 INFO : Done importing queries
25 Apr 2025 12:05:12,637 INFO : Loading etl definitions
25 Apr 2025 12:05:12,638 INFO : Loading wikis
25 Apr 2025 12:05:12,639 INFO : 0 wikis imported
25 Apr 2025 12:05:12,639 INFO : Done importing wikis
25 Apr 2025 12:05:12,640 INFO : Starting Data Class Importer
25 Apr 2025 12:05:12,640 INFO : No types XAR file to process.
25 Apr 2025 12:05:12,640 INFO : Finished Data Class Importer
25 Apr 2025 12:05:12,640 INFO : Starting to copy files to @files
25 Apr 2025 12:05:12,640 INFO : Copied 0 files to @files
25 Apr 2025 12:05:12,641 INFO : Starting to copy files to @assayfiles
25 Apr 2025 12:05:12,641 INFO : Copied 0 files to @assayfiles
25 Apr 2025 12:05:12,641 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 12:05:12,807 INFO : Starting Sample Type Importer
25 Apr 2025 12:05:12,807 INFO : No types XAR file to process.
25 Apr 2025 12:05:12,807 INFO : Finished Sample Type Importer
25 Apr 2025 12:05:12,807 INFO : Loading xar
25 Apr 2025 12:05:12,818 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14967:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:12,819 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14967:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:12,820 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14967:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:12,820 DEBUG: Protocol import complete
25 Apr 2025 12:05:12,821 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14967:Identification+of+peptide+isoforms+in+gS-crystallin+using+stable+isotope+labeled+peptides'
25 Apr 2025 12:05:12,821 DEBUG: Experiment/Run group import complete
25 Apr 2025 12:05:12,827 DEBUG: Protocol action set import complete
25 Apr 2025 12:05:12,828 INFO : Done importing xar
25 Apr 2025 12:05:12,829 INFO : Loading pages and webpart properties
25 Apr 2025 12:05:12,872 INFO : Done importing 3 page(s) with 5 webpart(s)
25 Apr 2025 12:05:12,872 INFO : Loading File Browser config
25 Apr 2025 12:05:12,872 INFO : Done importing File Browser config
25 Apr 2025 12:05:12,873 INFO : Starting Sample Status Data import
25 Apr 2025 12:05:12,873 INFO : No sample types XAR file to process.
25 Apr 2025 12:05:12,873 INFO : Finished importing Sample Status Data
25 Apr 2025 12:05:12,877 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:12,878 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 12:05:12,878 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 12:05:12,879 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 12:05:12,879 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 12:05:12,879 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:12,880 INFO : Loading subfolders and container tabs
25 Apr 2025 12:05:12,912 INFO : New folder created with inherited permissions: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:12,912 INFO : Loading folder archive for Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:12,912 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens] Importing folder properties from: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:12,914 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:12,915 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens] Folder type: Targeted MS
25 Apr 2025 12:05:12,915 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens] Active modules: TargetedMS, Query, PanoramaPublic, FileContent, Search, Protein, Core, Issues, Experiment, Pipeline, Wiki, Announcements, API
25 Apr 2025 12:05:12,946 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:12,947 INFO : Loading container specific module properties
25 Apr 2025 12:05:12,951 INFO : Done importing container specific module properties
25 Apr 2025 12:05:12,952 INFO : Loading queries
25 Apr 2025 12:05:12,954 INFO : 1 query imported
25 Apr 2025 12:05:12,954 INFO : Done importing queries
25 Apr 2025 12:05:12,955 INFO : Loading etl definitions
25 Apr 2025 12:05:12,956 INFO : Loading wikis
25 Apr 2025 12:05:12,957 INFO : 0 wikis imported
25 Apr 2025 12:05:12,957 INFO : Done importing wikis
25 Apr 2025 12:05:12,958 INFO : Starting Data Class Importer
25 Apr 2025 12:05:12,958 INFO : No types XAR file to process.
25 Apr 2025 12:05:12,958 INFO : Finished Data Class Importer
25 Apr 2025 12:05:12,958 INFO : Starting to copy files to @files
25 Apr 2025 12:05:12,958 INFO : Copied 0 files to @files
25 Apr 2025 12:05:12,959 INFO : Starting to copy files to @assayfiles
25 Apr 2025 12:05:12,959 INFO : Copied 0 files to @assayfiles
25 Apr 2025 12:05:12,959 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 12:05:12,962 INFO : Starting Sample Type Importer
25 Apr 2025 12:05:12,962 INFO : No types XAR file to process.
25 Apr 2025 12:05:12,962 INFO : Finished Sample Type Importer
25 Apr 2025 12:05:12,962 INFO : Loading xar
25 Apr 2025 12:05:13,208 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14968:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:13,209 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14968:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:13,210 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14968:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:13,210 DEBUG: Protocol import complete
25 Apr 2025 12:05:13,215 DEBUG: Protocol action set import complete
25 Apr 2025 12:05:13,219 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14968:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:13,223 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14968:6b56b094-014f-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:13,226 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14968:6b56b048-014f-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:13,226 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14968:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:13,227 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14968:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:13,228 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14968:6b56b150-014f-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:13,232 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Comparison%20of%20soluble%20and%20insoluble%20protein%20in%2088-year-old%20cataractous%20lens/xar/experiments_and_runs.xar.exploded/Run262326/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd into the system
25 Apr 2025 12:05:13,232 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Comparison%20of%20soluble%20and%20insoluble%20protein%20in%2088-year-old%20cataractous%20lens/xar/experiments_and_runs.xar.exploded/Run262326/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd into the system
25 Apr 2025 12:05:13,232 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Comparison%20of%20soluble%20and%20insoluble%20protein%20in%2088-year-old%20cataractous%20lens/xar/experiments_and_runs.xar.exploded/Run262326/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip into the system
25 Apr 2025 12:05:13,233 INFO : Starting import from 5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip
25 Apr 2025 12:05:13,235 INFO : Starting to import Skyline document from 5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip
25 Apr 2025 12:05:13,235 INFO : Expanding DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:13,339 INFO : Expanding DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:13,607 INFO : Expanding 5do+88yo_gS+double_deamidation.skyd
25 Apr 2025 12:05:13,631 INFO : Expanding 5do+88yo_gS+double_deamidation.sky.view
25 Apr 2025 12:05:13,631 INFO : Expanding 5do+88yo_gS+double_deamidation.sky
25 Apr 2025 12:05:13,633 INFO : Reading Skyline file, 5do+88yo_gS+double_deamidation.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Apr 2025 12:05:13,634 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Apr 2025 12:05:13,634 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
25 Apr 2025 12:05:13,635 INFO : 6% Done
25 Apr 2025 12:05:13,635 INFO : Copying SKYD to temp directory for import purposes
25 Apr 2025 12:05:13,641 INFO : Copying complete
25 Apr 2025 12:05:13,642 DEBUG: Starting to load chromatogram headers
25 Apr 2025 12:05:13,642 DEBUG: Done loading chromatogram headers
25 Apr 2025 12:05:13,786 INFO : 13% Done
25 Apr 2025 12:05:13,786 INFO : Inserting sp|P22914|CRBS_HUMAN
25 Apr 2025 12:05:13,789 INFO : 25% Done
25 Apr 2025 12:05:13,796 INFO : 37% Done
25 Apr 2025 12:05:13,802 INFO : 50% Done
25 Apr 2025 12:05:13,807 INFO : 62% Done
25 Apr 2025 12:05:13,812 INFO : 74% Done
25 Apr 2025 12:05:13,818 INFO : 87% Done
25 Apr 2025 12:05:13,823 INFO : 98% Done
25 Apr 2025 12:05:13,827 DEBUG: Total peptides inserted: 7
25 Apr 2025 12:05:13,827 INFO : Done parsing Skyline document.
25 Apr 2025 12:05:13,828 INFO : Creating and populating temp tables for Proportion values
25 Apr 2025 12:05:13,832 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Apr 2025 12:05:13,832 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Apr 2025 12:05:13,833 INFO : Cleaning up temp tables
25 Apr 2025 12:05:14,084 INFO : Deleted temp copy of SKYD file
25 Apr 2025 12:05:14,084 INFO : Completed import of Skyline document from 5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip
25 Apr 2025 12:05:14,086 INFO : 100% Done
25 Apr 2025 12:05:14,089 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Comparison%20of%20soluble%20and%20insoluble%20protein%20in%2088-year-old%20cataractous%20lens/xar/experiments_and_runs.xar.exploded/Run262326/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip into the system
25 Apr 2025 12:05:14,274 INFO : Done importing xar
25 Apr 2025 12:05:14,275 INFO : Loading pages and webpart properties
25 Apr 2025 12:05:14,319 INFO : Done importing 3 page(s) with 5 webpart(s)
25 Apr 2025 12:05:14,319 INFO : Loading File Browser config
25 Apr 2025 12:05:14,319 INFO : Done importing File Browser config
25 Apr 2025 12:05:14,320 INFO : Starting Sample Status Data import
25 Apr 2025 12:05:14,320 INFO : No sample types XAR file to process.
25 Apr 2025 12:05:14,320 INFO : Finished importing Sample Status Data
25 Apr 2025 12:05:14,324 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:14,325 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 12:05:14,325 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 12:05:14,326 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 12:05:14,326 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 12:05:14,326 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:14,327 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
25 Apr 2025 12:05:14,332 INFO : Adding runs imported in subfolders.
25 Apr 2025 12:05:14,337 INFO : Moving files to folder /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens and creating symlinks
25 Apr 2025 12:05:14,339 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles
25 Apr 2025 12:05:14,341 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_insol_88yo_cataract_WiSIM-DIA.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_insol_88yo_cataract_WiSIM-DIA.raw
25 Apr 2025 12:05:14,343 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_insol_88yo_cataract_WiSIM-DIA.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_insol_88yo_cataract_WiSIM-DIA.raw
25 Apr 2025 12:05:14,344 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_sol_88yo_cataract_WiSIM-DIA.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_sol_88yo_cataract_WiSIM-DIA.raw
25 Apr 2025 12:05:14,345 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_sol_88yo_cataract_WiSIM-DIA.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Nuc_sol_88yo_cataract_WiSIM-DIA.raw
25 Apr 2025 12:05:14,346 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library
25 Apr 2025 12:05:14,348 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw
25 Apr 2025 12:05:14,348 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw
25 Apr 2025 12:05:14,349 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf
25 Apr 2025 12:05:14,350 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf
25 Apr 2025 12:05:14,351 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/5-day_old_soluble_wiSIM-DIA.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/5-day_old_soluble_wiSIM-DIA.raw
25 Apr 2025 12:05:14,352 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/5-day_old_soluble_wiSIM-DIA.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/RawFiles/5-day_old_soluble_wiSIM-DIA.raw
25 Apr 2025 12:05:14,353 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05
25 Apr 2025 12:05:14,354 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.redundant.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:14,355 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.redundant.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:14,356 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky.view to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky.view
25 Apr 2025 12:05:14,356 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky.view targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky.view
25 Apr 2025 12:05:14,358 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd
25 Apr 2025 12:05:14,358 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd
25 Apr 2025 12:05:14,359 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:14,360 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:14,361 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky
25 Apr 2025 12:05:14,362 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.sky
25 Apr 2025 12:05:14,363 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip
25 Apr 2025 12:05:14,364 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip
25 Apr 2025 12:05:14,365 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/assaydata
25 Apr 2025 12:05:14,365 INFO : Aligning data files urls in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:14,367 DEBUG: Setting filePathRoot on copied run: 5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files
25 Apr 2025 12:05:14,369 DEBUG: Setting dataFileUri on copied data: 5do+88yo_gS+double_deamidation.skyd to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05/5do+88yo_gS+double_deamidation.skyd
25 Apr 2025 12:05:14,370 DEBUG: Setting dataFileUri on copied data: 5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_19-30-05.sky.zip
25 Apr 2025 12:05:14,370 INFO : Updating skydDataIds in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:14,372 INFO : Done importing folder archive for Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:14,402 INFO : New folder created with inherited permissions: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:14,402 INFO : Loading folder archive for Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:14,402 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards] Importing folder properties from: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:14,403 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:14,403 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards] Folder type: Targeted MS
25 Apr 2025 12:05:14,403 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards] Active modules: TargetedMS, Query, PanoramaPublic, FileContent, Search, Protein, Core, Issues, Experiment, Pipeline, Wiki, Announcements, API
25 Apr 2025 12:05:14,433 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:14,434 INFO : Loading container specific module properties
25 Apr 2025 12:05:14,438 INFO : Done importing container specific module properties
25 Apr 2025 12:05:14,439 INFO : Loading queries
25 Apr 2025 12:05:14,441 INFO : 1 query imported
25 Apr 2025 12:05:14,441 INFO : Done importing queries
25 Apr 2025 12:05:14,442 INFO : Loading etl definitions
25 Apr 2025 12:05:14,443 INFO : Loading wikis
25 Apr 2025 12:05:14,443 INFO : 0 wikis imported
25 Apr 2025 12:05:14,443 INFO : Done importing wikis
25 Apr 2025 12:05:14,444 INFO : Starting Data Class Importer
25 Apr 2025 12:05:14,445 INFO : No types XAR file to process.
25 Apr 2025 12:05:14,445 INFO : Finished Data Class Importer
25 Apr 2025 12:05:14,446 INFO : Starting to copy files to @files
25 Apr 2025 12:05:14,446 INFO : Copied 0 files to @files
25 Apr 2025 12:05:14,446 INFO : Starting to copy files to @assayfiles
25 Apr 2025 12:05:14,446 INFO : Copied 0 files to @assayfiles
25 Apr 2025 12:05:14,446 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 12:05:14,449 INFO : Starting Sample Type Importer
25 Apr 2025 12:05:14,449 INFO : No types XAR file to process.
25 Apr 2025 12:05:14,449 INFO : Finished Sample Type Importer
25 Apr 2025 12:05:14,450 INFO : Loading xar
25 Apr 2025 12:05:15,616 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14969:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:15,617 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14969:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:15,618 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14969:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:15,618 DEBUG: Protocol import complete
25 Apr 2025 12:05:15,623 DEBUG: Protocol action set import complete
25 Apr 2025 12:05:15,627 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14969:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:15,630 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14969:c69eb083-0141-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:15,633 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14969:e317336b-0137-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:15,633 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14969:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:15,634 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14969:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:15,635 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14969:c69eb15e-0141-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:15,638 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Insoluble%20%20protein%20from%2088-year-old%20cataractous%20lens%20nucleus%20with%20stable%20isotope%20standards/xar/experiments_and_runs.xar.exploded/Run262304/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd into the system
25 Apr 2025 12:05:15,638 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Insoluble%20%20protein%20from%2088-year-old%20cataractous%20lens%20nucleus%20with%20stable%20isotope%20standards/xar/experiments_and_runs.xar.exploded/Run262304/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd into the system
25 Apr 2025 12:05:15,638 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Insoluble%20%20protein%20from%2088-year-old%20cataractous%20lens%20nucleus%20with%20stable%20isotope%20standards/xar/experiments_and_runs.xar.exploded/Run262304/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip into the system
25 Apr 2025 12:05:15,639 INFO : Starting import from synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip
25 Apr 2025 12:05:15,640 INFO : Starting to import Skyline document from synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip
25 Apr 2025 12:05:15,641 INFO : Expanding DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:15,749 INFO : Expanding DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:16,026 INFO : Expanding synthetic_heavy_gS_peptides_4-21-25.skyd
25 Apr 2025 12:05:16,619 INFO : Expanding synthetic_heavy_gS_peptides_4-21-25.sky.view
25 Apr 2025 12:05:16,620 INFO : Expanding synthetic_heavy_gS_peptides_4-21-25.sky
25 Apr 2025 12:05:16,624 INFO : Reading Skyline file, synthetic_heavy_gS_peptides_4-21-25.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Apr 2025 12:05:16,628 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Apr 2025 12:05:16,628 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
25 Apr 2025 12:05:16,630 INFO : 3% Done
25 Apr 2025 12:05:16,630 INFO : Copying SKYD to temp directory for import purposes
25 Apr 2025 12:05:16,760 INFO : Copying complete
25 Apr 2025 12:05:16,760 DEBUG: Starting to load chromatogram headers
25 Apr 2025 12:05:16,761 DEBUG: Done loading chromatogram headers
25 Apr 2025 12:05:16,908 INFO : Inserting gamma S peptides
25 Apr 2025 12:05:16,913 INFO : 21% Done
25 Apr 2025 12:05:16,953 INFO : 38% Done
25 Apr 2025 12:05:16,995 INFO : 55% Done
25 Apr 2025 12:05:17,034 INFO : 73% Done
25 Apr 2025 12:05:17,073 INFO : 81% Done
25 Apr 2025 12:05:17,095 INFO : 98% Done
25 Apr 2025 12:05:17,132 DEBUG: Total peptides inserted: 6
25 Apr 2025 12:05:17,132 INFO : Done parsing Skyline document.
25 Apr 2025 12:05:17,132 INFO : Creating and populating temp tables for Proportion values
25 Apr 2025 12:05:17,136 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Apr 2025 12:05:17,147 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Apr 2025 12:05:17,151 INFO : Cleaning up temp tables
25 Apr 2025 12:05:17,408 INFO : Deleted temp copy of SKYD file
25 Apr 2025 12:05:17,408 INFO : Completed import of Skyline document from synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip
25 Apr 2025 12:05:17,410 INFO : 100% Done
25 Apr 2025 12:05:17,416 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Insoluble%20%20protein%20from%2088-year-old%20cataractous%20lens%20nucleus%20with%20stable%20isotope%20standards/xar/experiments_and_runs.xar.exploded/Run262304/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip into the system
25 Apr 2025 12:05:17,597 INFO : Done importing xar
25 Apr 2025 12:05:17,598 INFO : Loading pages and webpart properties
25 Apr 2025 12:05:17,642 INFO : Done importing 3 page(s) with 5 webpart(s)
25 Apr 2025 12:05:17,642 INFO : Loading File Browser config
25 Apr 2025 12:05:17,642 INFO : Done importing File Browser config
25 Apr 2025 12:05:17,643 INFO : Starting Sample Status Data import
25 Apr 2025 12:05:17,643 INFO : No sample types XAR file to process.
25 Apr 2025 12:05:17,643 INFO : Finished importing Sample Status Data
25 Apr 2025 12:05:17,646 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:17,648 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 12:05:17,648 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 12:05:17,648 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 12:05:17,648 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 12:05:17,648 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:17,649 INFO : Moving files to folder /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards and creating symlinks
25 Apr 2025 12:05:17,653 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles
25 Apr 2025 12:05:17,654 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/15_d-D76_l-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/15_d-D76_l-isoD77.raw
25 Apr 2025 12:05:17,655 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/15_d-D76_l-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/15_d-D76_l-isoD77.raw
25 Apr 2025 12:05:17,657 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_d-D12_l-N14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_d-D12_l-N14.raw
25 Apr 2025 12:05:17,657 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_d-D12_l-N14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_d-D12_l-N14.raw
25 Apr 2025 12:05:17,658 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_l-isoD76_d-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_l-isoD76_d-D77.raw
25 Apr 2025 12:05:17,659 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_l-isoD76_d-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_l-isoD76_d-D77.raw
25 Apr 2025 12:05:17,660 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D12_l-isoD14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D12_l-isoD14.raw
25 Apr 2025 12:05:17,661 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D12_l-isoD14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D12_l-isoD14.raw
25 Apr 2025 12:05:17,662 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-isoD12_l-isoD14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-isoD12_l-isoD14.raw
25 Apr 2025 12:05:17,663 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-isoD12_l-isoD14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-isoD12_l-isoD14.raw
25 Apr 2025 12:05:17,664 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/12_d-D76_d-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/12_d-D76_d-D77.raw
25 Apr 2025 12:05:17,665 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/12_d-D76_d-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/12_d-D76_d-D77.raw
25 Apr 2025 12:05:17,666 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/16_d-isoD76_d-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/16_d-isoD76_d-D77.raw
25 Apr 2025 12:05:17,666 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/16_d-isoD76_d-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/16_d-isoD76_d-D77.raw
25 Apr 2025 12:05:17,668 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD76_l-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD76_l-D77.raw
25 Apr 2025 12:05:17,668 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD76_l-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD76_l-D77.raw
25 Apr 2025 12:05:17,669 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_d-isoD12_l-isoD14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_d-isoD12_l-isoD14.raw
25 Apr 2025 12:05:17,670 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_d-isoD12_l-isoD14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/9_d-isoD12_l-isoD14.raw
25 Apr 2025 12:05:17,671 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD143.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD143.raw
25 Apr 2025 12:05:17,672 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD143.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD143.raw
25 Apr 2025 12:05:17,673 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-D12_l-D14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-D12_l-D14.raw
25 Apr 2025 12:05:17,674 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-D12_l-D14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-D12_l-D14.raw
25 Apr 2025 12:05:17,675 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/19_d-isoD76_d_isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/19_d-isoD76_d_isoD77.raw
25 Apr 2025 12:05:17,676 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/19_d-isoD76_d_isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/19_d-isoD76_d_isoD77.raw
25 Apr 2025 12:05:17,677 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/13_d-isoD76_l-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/13_d-isoD76_l-D77.raw
25 Apr 2025 12:05:17,677 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/13_d-isoD76_l-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/13_d-isoD76_l-D77.raw
25 Apr 2025 12:05:17,679 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-N76_D-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-N76_D-isoD77.raw
25 Apr 2025 12:05:17,679 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-N76_D-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-N76_D-isoD77.raw
25 Apr 2025 12:05:17,681 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/14_l-isoD76_l-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/14_l-isoD76_l-isoD77.raw
25 Apr 2025 12:05:17,681 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/14_l-isoD76_l-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/14_l-isoD76_l-isoD77.raw
25 Apr 2025 12:05:17,682 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-N76_d-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-N76_d-D77.raw
25 Apr 2025 12:05:17,683 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-N76_d-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-N76_d-D77.raw
25 Apr 2025 12:05:17,684 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-N76_l-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-N76_l-isoD77.raw
25 Apr 2025 12:05:17,685 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-N76_l-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_l-N76_l-isoD77.raw
25 Apr 2025 12:05:17,686 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D76_l-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D76_l-D77.raw
25 Apr 2025 12:05:17,687 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D76_l-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D76_l-D77.raw
25 Apr 2025 12:05:17,688 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_d-isoD143.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_d-isoD143.raw
25 Apr 2025 12:05:17,689 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_d-isoD143.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_d-isoD143.raw
25 Apr 2025 12:05:17,690 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-D76_l-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-D76_l-D77.raw
25 Apr 2025 12:05:17,691 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-D76_l-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-D76_l-D77.raw
25 Apr 2025 12:05:17,692 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD12_l-D14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD12_l-D14.raw
25 Apr 2025 12:05:17,693 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD12_l-D14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/3_l-isoD12_l-D14.raw
25 Apr 2025 12:05:17,694 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/10_l-D76_d-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/10_l-D76_d-isoD77.raw
25 Apr 2025 12:05:17,695 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/10_l-D76_d-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/10_l-D76_d-isoD77.raw
25 Apr 2025 12:05:17,696 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library
25 Apr 2025 12:05:17,697 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw
25 Apr 2025 12:05:17,698 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw
25 Apr 2025 12:05:17,701 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf
25 Apr 2025 12:05:17,701 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf
25 Apr 2025 12:05:17,703 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D12_d-isoD14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D12_d-isoD14.raw
25 Apr 2025 12:05:17,703 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D12_d-isoD14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/4_l-D12_d-isoD14.raw
25 Apr 2025 12:05:17,704 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-isoD12_d-isoD14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-isoD12_d-isoD14.raw
25 Apr 2025 12:05:17,705 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-isoD12_d-isoD14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/7_d-isoD12_d-isoD14.raw
25 Apr 2025 12:05:17,706 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D76_l-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D76_l-isoD77.raw
25 Apr 2025 12:05:17,707 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D76_l-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/5_l-D76_l-isoD77.raw
25 Apr 2025 12:05:17,708 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/18_d-D76_d-isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/18_d-D76_d-isoD77.raw
25 Apr 2025 12:05:17,708 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/18_d-D76_d-isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/18_d-D76_d-isoD77.raw
25 Apr 2025 12:05:17,710 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/17_d-isoD76_l_isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/17_d-isoD76_l_isoD77.raw
25 Apr 2025 12:05:17,710 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/17_d-isoD76_l_isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/17_d-isoD76_l_isoD77.raw
25 Apr 2025 12:05:17,712 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_d-D143.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_d-D143.raw
25 Apr 2025 12:05:17,712 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_d-D143.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/2_d-D143.raw
25 Apr 2025 12:05:17,713 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/11_l-isoD76_D_isoD77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/11_l-isoD76_D_isoD77.raw
25 Apr 2025 12:05:17,714 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/11_l-isoD76_D_isoD77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/11_l-isoD76_D_isoD77.raw
25 Apr 2025 12:05:17,715 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-D143.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-D143.raw
25 Apr 2025 12:05:17,716 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-D143.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/1_l-D143.raw
25 Apr 2025 12:05:17,717 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-D76_d-D77.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-D76_d-D77.raw
25 Apr 2025 12:05:17,717 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-D76_d-D77.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/6_l-D76_d-D77.raw
25 Apr 2025 12:05:17,719 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD12_d-isoD14.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD12_d-isoD14.raw
25 Apr 2025 12:05:17,719 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD12_d-isoD14.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/RawFiles/8_l-isoD12_d-isoD14.raw
25 Apr 2025 12:05:17,720 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip
25 Apr 2025 12:05:17,721 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip
25 Apr 2025 12:05:17,721 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22
25 Apr 2025 12:05:17,722 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky.view to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky.view
25 Apr 2025 12:05:17,723 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky.view targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky.view
25 Apr 2025 12:05:17,724 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd
25 Apr 2025 12:05:17,724 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd
25 Apr 2025 12:05:17,725 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.redundant.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:17,726 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.redundant.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:17,727 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky
25 Apr 2025 12:05:17,728 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.sky
25 Apr 2025 12:05:17,729 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:17,730 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:17,731 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/assaydata
25 Apr 2025 12:05:17,731 INFO : Aligning data files urls in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:17,733 DEBUG: Setting filePathRoot on copied run: synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files
25 Apr 2025 12:05:17,735 DEBUG: Setting dataFileUri on copied data: synthetic_heavy_gS_peptides_4-21-25.skyd to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22/synthetic_heavy_gS_peptides_4-21-25.skyd
25 Apr 2025 12:05:17,736 DEBUG: Setting dataFileUri on copied data: synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards/@files/synthetic_heavy_gS_peptides_4-21-25_2025-04-21_16-42-22.sky.zip
25 Apr 2025 12:05:17,736 INFO : Updating skydDataIds in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:17,737 INFO : Done importing folder archive for Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:17,767 INFO : New folder created with inherited permissions: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:17,767 INFO : Loading folder archive for Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:17,768 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18] Importing folder properties from: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:17,768 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:17,768 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18] Folder type: Targeted MS
25 Apr 2025 12:05:17,769 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18] Active modules: TargetedMS, Query, PanoramaPublic, FileContent, Search, Protein, Core, Issues, Experiment, Pipeline, Wiki, Announcements, API
25 Apr 2025 12:05:17,797 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 12:05:17,798 INFO : Loading container specific module properties
25 Apr 2025 12:05:17,801 INFO : Done importing container specific module properties
25 Apr 2025 12:05:17,802 INFO : Loading queries
25 Apr 2025 12:05:17,804 INFO : 1 query imported
25 Apr 2025 12:05:17,804 INFO : Done importing queries
25 Apr 2025 12:05:17,805 INFO : Loading etl definitions
25 Apr 2025 12:05:17,806 INFO : Loading wikis
25 Apr 2025 12:05:17,806 INFO : 0 wikis imported
25 Apr 2025 12:05:17,806 INFO : Done importing wikis
25 Apr 2025 12:05:17,808 INFO : Starting Data Class Importer
25 Apr 2025 12:05:17,808 INFO : No types XAR file to process.
25 Apr 2025 12:05:17,808 INFO : Finished Data Class Importer
25 Apr 2025 12:05:17,808 INFO : Starting to copy files to @files
25 Apr 2025 12:05:17,808 INFO : Copied 0 files to @files
25 Apr 2025 12:05:17,809 INFO : Starting to copy files to @assayfiles
25 Apr 2025 12:05:17,809 INFO : Copied 0 files to @assayfiles
25 Apr 2025 12:05:17,809 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 12:05:17,812 INFO : Starting Sample Type Importer
25 Apr 2025 12:05:17,812 INFO : No types XAR file to process.
25 Apr 2025 12:05:17,812 INFO : Finished Sample Type Importer
25 Apr 2025 12:05:17,813 INFO : Loading xar
25 Apr 2025 12:05:18,040 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14970:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:18,041 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14970:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:18,042 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14970:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:18,042 DEBUG: Protocol import complete
25 Apr 2025 12:05:18,047 DEBUG: Protocol action set import complete
25 Apr 2025 12:05:18,050 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14970:TargetedMS.ImportSkyZip'
25 Apr 2025 12:05:18,054 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14970:7d386ed2-03b5-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:18,056 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14970:7d386e96-03b5-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:18,056 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14970:TargetedMS.ImportSkyZip.Core'
25 Apr 2025 12:05:18,058 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14970:TargetedMS.ImportSkyZip.Output'
25 Apr 2025 12:05:18,058 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14970:7d386fab-03b5-103e-9c0d-1cc91aa94300'
25 Apr 2025 12:05:18,061 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Localization%20of%20deamidation%20in%20gamma%20S%20peptide%207-18/xar/experiments_and_runs.xar.exploded/Run262831/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd into the system
25 Apr 2025 12:05:18,061 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Localization%20of%20deamidation%20in%20gamma%20S%20peptide%207-18/xar/experiments_and_runs.xar.exploded/Run262831/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd into the system
25 Apr 2025 12:05:18,061 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Localization%20of%20deamidation%20in%20gamma%20S%20peptide%207-18/xar/experiments_and_runs.xar.exploded/Run262831/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip into the system
25 Apr 2025 12:05:18,062 INFO : Starting import from deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip
25 Apr 2025 12:05:18,064 INFO : Starting to import Skyline document from deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip
25 Apr 2025 12:05:18,064 INFO : Expanding human_crystallins.protdb
25 Apr 2025 12:05:18,065 INFO : Expanding DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:18,172 INFO : Expanding DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:18,456 INFO : Expanding deamidation_localization_gS_7-18.skyd
25 Apr 2025 12:05:18,457 INFO : Expanding deamidation_localization_gS_7-18.sky.view
25 Apr 2025 12:05:18,458 INFO : Expanding deamidation_localization_gS_7-18.sky
25 Apr 2025 12:05:18,458 INFO : Reading Skyline file, deamidation_localization_gS_7-18.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Apr 2025 12:05:18,459 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Apr 2025 12:05:18,459 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
25 Apr 2025 12:05:18,460 INFO : 26% Done
25 Apr 2025 12:05:18,461 INFO : Copying SKYD to temp directory for import purposes
25 Apr 2025 12:05:18,461 INFO : Copying complete
25 Apr 2025 12:05:18,462 DEBUG: Starting to load chromatogram headers
25 Apr 2025 12:05:18,462 DEBUG: Done loading chromatogram headers
25 Apr 2025 12:05:18,579 INFO : Inserting sp|P22914|CRBS_HUMAN
25 Apr 2025 12:05:18,583 INFO : 47% Done
25 Apr 2025 12:05:18,587 INFO : 63% Done
25 Apr 2025 12:05:18,590 INFO : 78% Done
25 Apr 2025 12:05:18,593 INFO : 98% Done
25 Apr 2025 12:05:18,595 DEBUG: Total peptides inserted: 4
25 Apr 2025 12:05:18,596 INFO : Done parsing Skyline document.
25 Apr 2025 12:05:18,596 INFO : Creating and populating temp tables for Proportion values
25 Apr 2025 12:05:18,600 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Apr 2025 12:05:18,600 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Apr 2025 12:05:18,601 INFO : Cleaning up temp tables
25 Apr 2025 12:05:18,838 INFO : Deleted temp copy of SKYD file
25 Apr 2025 12:05:18,838 INFO : Completed import of Skyline document from deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip
25 Apr 2025 12:05:18,840 INFO : 100% Done
25 Apr 2025 12:05:18,846 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/OHSU%20Proteomics%20Shared%20Resource%20-%20Stable%20isotope%20labeled%20standards%20to%20ID%20Asp%20isomerization%20in%20lens/@files/export/subfolders/Localization%20of%20deamidation%20in%20gamma%20S%20peptide%207-18/xar/experiments_and_runs.xar.exploded/Run262831/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip into the system
25 Apr 2025 12:05:19,027 INFO : Done importing xar
25 Apr 2025 12:05:19,028 INFO : Loading pages and webpart properties
25 Apr 2025 12:05:19,072 INFO : Done importing 3 page(s) with 5 webpart(s)
25 Apr 2025 12:05:19,072 INFO : Loading File Browser config
25 Apr 2025 12:05:19,072 INFO : Done importing File Browser config
25 Apr 2025 12:05:19,073 INFO : Starting Sample Status Data import
25 Apr 2025 12:05:19,073 INFO : No sample types XAR file to process.
25 Apr 2025 12:05:19,073 INFO : Finished importing Sample Status Data
25 Apr 2025 12:05:19,076 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:19,077 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 12:05:19,077 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 12:05:19,078 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 12:05:19,078 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 12:05:19,078 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 12:05:19,079 INFO : Moving files to folder /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18 and creating symlinks
25 Apr 2025 12:05:19,080 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip
25 Apr 2025 12:05:19,081 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip
25 Apr 2025 12:05:19,082 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles
25 Apr 2025 12:05:19,084 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/localization_gD,gS_4NI_1ug_20161206_OT.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/localization_gD,gS_4NI_1ug_20161206_OT.raw
25 Apr 2025 12:05:19,084 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/localization_gD,gS_4NI_1ug_20161206_OT.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/localization_gD,gS_4NI_1ug_20161206_OT.raw
25 Apr 2025 12:05:19,086 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library
25 Apr 2025 12:05:19,087 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw
25 Apr 2025 12:05:19,088 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.raw
25 Apr 2025 12:05:19,089 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf
25 Apr 2025 12:05:19,089 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/RawFiles/Library/Nuc_insol_4_DD_1ug_new_digest_20160720_OT.msf
25 Apr 2025 12:05:19,091 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46
25 Apr 2025 12:05:19,092 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.redundant.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:19,093 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.redundant.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.redundant.blib
25 Apr 2025 12:05:19,093 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd
25 Apr 2025 12:05:19,094 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd
25 Apr 2025 12:05:19,095 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/human_crystallins.protdb to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/human_crystallins.protdb
25 Apr 2025 12:05:19,096 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/human_crystallins.protdb targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/human_crystallins.protdb
25 Apr 2025 12:05:19,097 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:19,098 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/DDA_88_year_old_insoluble_nucleus.blib
25 Apr 2025 12:05:19,099 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky
25 Apr 2025 12:05:19,099 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky
25 Apr 2025 12:05:19,100 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky.view to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky.view
25 Apr 2025 12:05:19,102 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky.view targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.sky.view
25 Apr 2025 12:05:19,102 INFO : Aligning data files urls in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:19,103 DEBUG: Setting filePathRoot on copied run: deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files
25 Apr 2025 12:05:19,105 DEBUG: Setting dataFileUri on copied data: deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46.sky.zip
25 Apr 2025 12:05:19,107 DEBUG: Setting dataFileUri on copied data: deamidation_localization_gS_7-18.skyd to: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18/@files/deamidation_localization_gS_7-18_2025-04-24_20-52-46/deamidation_localization_gS_7-18.skyd
25 Apr 2025 12:05:19,107 INFO : Updating skydDataIds in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:19,108 INFO : Done importing folder archive for Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:19,108 INFO : Done importing subfolders and container tabs
25 Apr 2025 12:05:19,108 INFO : Moving files to folder /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens and creating symlinks
25 Apr 2025 12:05:19,110 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30
25 Apr 2025 12:05:19,111 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky.view to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky.view
25 Apr 2025 12:05:19,112 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky.view targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky.view
25 Apr 2025 12:05:19,114 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.skyd to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.skyd
25 Apr 2025 12:05:19,114 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.skyd targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.skyd
25 Apr 2025 12:05:19,115 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.redundant.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.redundant.blib
25 Apr 2025 12:05:19,116 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.redundant.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.redundant.blib
25 Apr 2025 12:05:19,117 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.blib to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.blib
25 Apr 2025 12:05:19,117 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.blib targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/NI5_NR_glutathione.blib
25 Apr 2025 12:05:19,119 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky
25 Apr 2025 12:05:19,119 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30/5do+88yo_gS+double_deamidation.sky
25 Apr 2025 12:05:19,121 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/RawFiles
25 Apr 2025 12:05:19,123 DEBUG: Moved file /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30.sky.zip to /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30.sky.zip
25 Apr 2025 12:05:19,123 DEBUG: Created symlink /data/labkey/files/OHSU - Proteomics Shared Resource/PSR Projects/Larry David Projects/Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30.sky.zip targeting /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/5do+88yo_gS+double_deamidation_2025-04-21_08-39-30.sky.zip
25 Apr 2025 12:05:19,124 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/assaydata
25 Apr 2025 12:05:19,124 INFO : Aligning data files urls in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens
25 Apr 2025 12:05:19,125 INFO : Updating skydDataIds in folder: /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens
25 Apr 2025 12:05:19,125 INFO : Importing files metadata.
25 Apr 2025 12:05:19,125 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens] Reading files metadata from /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export
25 Apr 2025 12:05:19,126 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Comparison of soluble and insoluble protein in 88-year-old cataractous lens] Reading files metadata from /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Comparison of soluble and insoluble protein in 88-year-old cataractous lens
25 Apr 2025 12:05:19,130 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards] Reading files metadata from /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Insoluble protein from 88-year-old cataractous lens nucleus with stable isotope standards
25 Apr 2025 12:05:19,145 DEBUG: [/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/Localization of deamidation in gamma S peptide 7-18] Reading files metadata from /data/labkey/files/Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens/@files/export/subfolders/Localization of deamidation in gamma S peptide 7-18
25 Apr 2025 12:05:19,147 INFO :
25 Apr 2025 12:05:19,147 INFO : Experiment import completed successfully.
25 Apr 2025 12:05:19,147 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
25 Apr 2025 12:05:19,163 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
25 Apr 2025 12:05:19,163 INFO :
25 Apr 2025 12:05:19,163 INFO : Checking for library folders.
25 Apr 2025 12:05:19,165 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
25 Apr 2025 12:05:19,178 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
25 Apr 2025 12:05:19,178 INFO :
25 Apr 2025 12:05:19,178 INFO : Finishing up experiment copy.
25 Apr 2025 12:05:19,179 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/OHSU Proteomics Shared Resource - Stable isotope labeled standards to ID Asp isomerization in lens
25 Apr 2025 12:05:19,179 INFO : Setting version on new experiment to 1
25 Apr 2025 12:05:19,182 INFO : Updating permanent link to point to the new copy of the data.
25 Apr 2025 12:05:19,204 INFO : Removing copy permissions given to Panorama Public
25 Apr 2025 12:05:19,208 INFO : Adding read permissions to all users that are folder admins in the source folder.
25 Apr 2025 12:05:19,208 INFO : Assigning ReaderRole to zientek@ohsu.edu
25 Apr 2025 12:05:19,208 INFO : Assigning ReaderRole to davidl@ohsu.edu
25 Apr 2025 12:05:19,208 INFO : Assigning ReaderRole to reddyas@ohsu.edu
25 Apr 2025 12:05:19,208 INFO : Assigning PanoramaPublicSubmitterRole to davidl@ohsu.edu
25 Apr 2025 12:05:19,210 INFO : User davidl@ohsu.edu is already a member of group Panorama Public Submitters
25 Apr 2025 12:05:19,210 INFO : Updating the 'Raw Data' tab configuration
25 Apr 2025 12:05:19,212 INFO : Creating a reviewer account.
25 Apr 2025 12:05:19,254 INFO : Created reviewer with email: panorama+reviewer342@proteinms.net
25 Apr 2025 12:05:19,254 INFO : Generating password.
25 Apr 2025 12:05:19,391 INFO : Set reviewer password successfully.
25 Apr 2025 12:05:19,394 INFO : Adding user panorama+reviewer342@proteinms.net to group Reviewers
25 Apr 2025 12:05:19,395 INFO : Hiding the Data Pipeline tab.
25 Apr 2025 12:05:19,405 INFO : Updating Submission. Setting copiedExperimentId to 2059
25 Apr 2025 12:05:22,237 INFO : Assigning a ProteomeXchange ID.
25 Apr 2025 12:05:22,444 INFO : Assigned ProteomeXchange ID: PXD063350
25 Apr 2025 12:05:22,444 INFO : Assigning a DOI.
25 Apr 2025 12:05:23,178 INFO : Assigned DOI: 10.6069/7x8g-2h28
25 Apr 2025 12:05:23,259 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'