20 Mar 2025 11:15:28,028 INFO : Validating data for a ProteomeXchange submission.

20 Mar 2025 11:15:28,028 INFO : =======================================

20 Mar 2025 11:15:28,039 DEBUG: Resetting Job ID: 2ac2ba26-e7e5-103d-b81a-1cc91aa93f00

20 Mar 2025 11:15:28,058 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'

20 Mar 2025 11:15:28,059 INFO : Validating data for experiment Id: 2031, validation Id: 1528

20 Mar 2025 11:15:28,094 INFO : Validating data for 5 Skyline documents in 1 folders

20 Mar 2025 11:15:28,124 INFO : Sample file validation for Skyline document: benchmark_10_2024-07-24_16-16-10.sky.zip

20 Mar 2025 11:15:28,124 INFO :   Found all sample files.

20 Mar 2025 11:15:28,128 INFO : Sample file validation for Skyline document: benchmark_stability_2024-07-24_16-18-55.sky.zip

20 Mar 2025 11:15:28,128 INFO :   Found all sample files.

20 Mar 2025 11:15:28,132 INFO : Sample file validation for Skyline document: benchmark_fgb_2024-07-24_16-23-34.sky.zip

20 Mar 2025 11:15:28,132 INFO :   Found all sample files.

20 Mar 2025 11:15:28,166 INFO : Sample file validation for Skyline document: benchmark_elution-evaluation_2_2024-07-24_16-27-00.sky.zip

20 Mar 2025 11:15:28,167 INFO :   Found all sample files.

20 Mar 2025 11:15:28,225 INFO : Sample file validation for Skyline document: benchmark_elution-evaluation_2024-07-24_16-47-22.sky.zip

20 Mar 2025 11:15:28,225 INFO :   Found all sample files.

20 Mar 2025 11:15:28,322 INFO : Modifications validation:

20 Mar 2025 11:15:28,322 INFO : VALID MODIFICATIONS:

20 Mar 2025 11:15:28,322 INFO : 10896: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl

20 Mar 2025 11:15:28,322 INFO :     benchmark_fgb_2024-07-24_16-23-34.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_elution-evaluation_2_2024-07-24_16-27-00.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_elution-evaluation_2024-07-24_16-47-22.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_10_2024-07-24_16-16-10.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_stability_2024-07-24_16-18-55.sky.zip

20 Mar 2025 11:15:28,322 INFO : 10897: Label:13C(6)15N(2) (K): UNIMOD:259 - Label:13C(6)15N(2)

20 Mar 2025 11:15:28,322 INFO :     benchmark_fgb_2024-07-24_16-23-34.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_elution-evaluation_2_2024-07-24_16-27-00.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_elution-evaluation_2024-07-24_16-47-22.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_10_2024-07-24_16-16-10.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_stability_2024-07-24_16-18-55.sky.zip

20 Mar 2025 11:15:28,322 INFO : 10898: Label:13C(6)15N(4) (R): UNIMOD:267 - Label:13C(6)15N(4)

20 Mar 2025 11:15:28,322 INFO :     benchmark_fgb_2024-07-24_16-23-34.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_elution-evaluation_2_2024-07-24_16-27-00.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_elution-evaluation_2024-07-24_16-47-22.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_10_2024-07-24_16-16-10.sky.zip

20 Mar 2025 11:15:28,322 INFO :     benchmark_stability_2024-07-24_16-18-55.sky.zip

20 Mar 2025 11:15:28,322 INFO : INVALID MODIFICATIONS (No Unimod ID):

20 Mar 2025 11:15:28,324 INFO : Validating spectral library: Assay Library - TSQ Altis_rev2.clib

20 Mar 2025 11:15:28,326 INFO : 'Assay Library - TSQ Altis_rev2' (Assay Library - TSQ Altis_rev2.clib) library in 1 Skyline documents was built with 0 raw files; 0 peptide Id files. Status: chromatogram library type is not supported.

20 Mar 2025 11:15:28,327 INFO : Validating spectral library: Assay Library - TSQ Altis_rev2.blib

20 Mar 2025 11:15:28,398 INFO : 'Assay Library - TSQ Altis_rev2 (benchmark_10)' (Assay Library - TSQ Altis_rev2.blib) library in 1 Skyline documents was built with 24 raw files; 0 peptide Id files. Status: Missing peptide ID file names in the .blib file.

20 Mar 2025 11:15:28,399 INFO : Validating spectral library: benchmark_panel_pass1.blib

20 Mar 2025 11:15:28,530 INFO : 'Benchmark panel pass 1' (benchmark_panel_pass1.blib) library in 3 Skyline documents was built with 25 raw files; 0 peptide Id files. Status: Missing spectrum  files. Missing peptide ID file names in the .blib file.

20 Mar 2025 11:15:28,530 INFO :   MISSING FILES:

20 Mar 2025 11:15:28,530 INFO :     Spectrum File: benchmark_library.sky

20 Mar 2025 11:15:28,531 INFO : Validating spectral library: benchmark_panel_pass2.blib

20 Mar 2025 11:15:29,067 INFO : 'Benchmark panel pass 2' (benchmark_panel_pass2.blib) library in 3 Skyline documents was built with 2 raw files; 0 peptide Id files. Status: Missing spectrum  files. Missing peptide ID file names in the .blib file.

20 Mar 2025 11:15:29,067 INFO :   MISSING FILES:

20 Mar 2025 11:15:29,067 INFO :     Spectrum File: benchmark_library_pass2.sky

20 Mar 2025 11:15:29,067 INFO : Spectral library validation complete.

20 Mar 2025 11:15:29,068 INFO : Data validation is complete. Status is Complete

20 Mar 2025 11:15:29,068 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'