16 Mar 2025 20:31:56,298 INFO : Copying experiment "Novel PFAS in Alligator Blood Discovered with Non-Targeted Ion Mobility-Mass Spectrometry" from folder /UNC - Baker Lab/2025 Alligator PFAS to /Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS
16 Mar 2025 20:31:56,298 INFO : =======================================
16 Mar 2025 20:31:56,316 DEBUG: Resetting Job ID: ac8dc52c-e50d-103d-b81a-1cc91aa93f00
16 Mar 2025 20:31:56,335 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 Mar 2025 20:31:56,335 INFO :
16 Mar 2025 20:31:56,335 INFO : Exporting experiment.
16 Mar 2025 20:32:01,753 INFO : Exporting files metadata.
16 Mar 2025 20:32:01,753 DEBUG: [/UNC - Baker Lab/2025 Alligator PFAS] Writing files metadata to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/export
16 Mar 2025 20:32:01,763 INFO :
16 Mar 2025 20:32:01,763 INFO : Experiment export completed successfully.
16 Mar 2025 20:32:01,763 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 Mar 2025 20:32:01,781 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 Mar 2025 20:32:01,782 INFO :
16 Mar 2025 20:32:01,782 INFO : Importing experiment.
16 Mar 2025 20:32:01,810 DEBUG: [/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS] Importing folder properties from: /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/export
16 Mar 2025 20:32:01,811 INFO : Loading folder properties (folder type, settings and active modules)
16 Mar 2025 20:32:01,811 DEBUG: [/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS] Folder type: Targeted MS
16 Mar 2025 20:32:01,811 DEBUG: [/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS] Active modules: Experiment, TargetedMS, Search, Query, Core, Issues, Protein, Announcements, Wiki, FileContent, Assay, Pipeline, PanoramaPublic, API
16 Mar 2025 20:32:01,843 INFO : Done importing folder properties (folder type, settings and active modules)
16 Mar 2025 20:32:01,844 INFO : Loading container specific module properties
16 Mar 2025 20:32:01,850 INFO : Done importing container specific module properties
16 Mar 2025 20:32:01,863 INFO : Loading queries
16 Mar 2025 20:32:01,867 INFO : 1 query imported
16 Mar 2025 20:32:01,867 INFO : Done importing queries
16 Mar 2025 20:32:01,868 INFO : Loading etl definitions
16 Mar 2025 20:32:01,869 INFO : Loading wikis
16 Mar 2025 20:32:01,870 INFO : 0 wikis imported
16 Mar 2025 20:32:01,870 INFO : Done importing wikis
16 Mar 2025 20:32:01,871 INFO : Starting Data Class Importer
16 Mar 2025 20:32:01,871 INFO : No types XAR file to process.
16 Mar 2025 20:32:01,871 INFO : Finished Data Class Importer
16 Mar 2025 20:32:01,872 INFO : Starting to copy files to @files
16 Mar 2025 20:32:01,872 INFO : Copied 0 files to @files
16 Mar 2025 20:32:01,872 INFO : Starting to copy files to @assayfiles
16 Mar 2025 20:32:01,872 INFO : Copied 0 files to @assayfiles
16 Mar 2025 20:32:01,872 INFO : Ensuring exp.data rows exist for imported files
16 Mar 2025 20:32:02,064 INFO : Starting Sample Type Importer
16 Mar 2025 20:32:02,064 INFO : No types XAR file to process.
16 Mar 2025 20:32:02,064 INFO : Finished Sample Type Importer
16 Mar 2025 20:32:02,065 INFO : Loading xar
16 Mar 2025 20:32:03,615 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14773:TargetedMS.ImportSkyZip'
16 Mar 2025 20:32:03,617 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14773:TargetedMS.ImportSkyZip.Core'
16 Mar 2025 20:32:03,618 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14773:TargetedMS.ImportSkyZip.Output'
16 Mar 2025 20:32:03,618 DEBUG: Protocol import complete
16 Mar 2025 20:32:03,619 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14773:Novel+PFAS+in+Alligator+Blood+Discovered+with+Non-Targeted+Ion+Mobility-Mass+Spectrometry'
16 Mar 2025 20:32:03,619 DEBUG: Experiment/Run group import complete
16 Mar 2025 20:32:03,625 DEBUG: Protocol action set import complete
16 Mar 2025 20:32:03,636 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14773:TargetedMS.ImportSkyZip'
16 Mar 2025 20:32:03,647 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14773:73229e91-e3f6-103d-b81a-1cc91aa93f00'
16 Mar 2025 20:32:03,650 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14773:73229e1e-e3f6-103d-b81a-1cc91aa93f00'
16 Mar 2025 20:32:03,650 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14773:TargetedMS.ImportSkyZip.Core'
16 Mar 2025 20:32:03,652 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14773:TargetedMS.ImportSkyZip.Output'
16 Mar 2025 20:32:03,652 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14773:d71b24ba-e3f6-103d-b81a-1cc91aa93f00'
16 Mar 2025 20:32:03,656 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNC%20Baker%20Lab%20-%202025%20Alligator%20PFAS/@files/export/xar/experiments_and_runs.xar.exploded/Run255626/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd into the system
16 Mar 2025 20:32:03,656 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNC%20Baker%20Lab%20-%202025%20Alligator%20PFAS/@files/export/xar/experiments_and_runs.xar.exploded/Run255626/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd into the system
16 Mar 2025 20:32:03,656 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNC%20Baker%20Lab%20-%202025%20Alligator%20PFAS/@files/export/xar/experiments_and_runs.xar.exploded/Run255626/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip into the system
16 Mar 2025 20:32:03,657 INFO : Starting import from 2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip
16 Mar 2025 20:32:03,659 INFO : Starting to import Skyline document from 2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip
16 Mar 2025 20:32:03,660 INFO : Expanding test_library.blib
16 Mar 2025 20:32:03,660 INFO : Expanding 2024-12-16_gator-PFAS-detections-only.skyd
16 Mar 2025 20:32:05,219 INFO : Expanding 2024-12-16_gator-PFAS-detections-only.sky.view
16 Mar 2025 20:32:05,220 INFO : Expanding 2024-12-16_gator-PFAS-detections-only.sky
16 Mar 2025 20:32:05,256 INFO : Expanding 2024-12-16_gator-PFAS-detections-only.skyl
16 Mar 2025 20:32:05,261 INFO : Reading Skyline file, 2024-12-16_gator-PFAS-detections-only.sky, to determine if the TransitionChromInfos in the document should be stored...
16 Mar 2025 20:32:05,937 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
16 Mar 2025 20:32:05,937 WARN : The version of this Skyline document is 24.11. This is newer than the highest supported version 23.1
16 Mar 2025 20:32:05,941 INFO : 1% Done
16 Mar 2025 20:32:05,943 DEBUG: Starting to load chromatogram headers
16 Mar 2025 20:32:05,993 DEBUG: Done loading chromatogram headers
16 Mar 2025 20:32:06,244 INFO : Inserting 01. SIL (MPFAC-HIF-ES)
16 Mar 2025 20:32:06,250 INFO : 2% Done
16 Mar 2025 20:32:06,306 INFO : 3% Done
16 Mar 2025 20:32:06,361 INFO : 4% Done
16 Mar 2025 20:32:06,416 INFO : 5% Done
16 Mar 2025 20:32:06,472 INFO : 6% Done
16 Mar 2025 20:32:06,526 INFO : 7% Done
16 Mar 2025 20:32:06,580 INFO : 9% Done
16 Mar 2025 20:32:06,635 INFO : 10% Done
16 Mar 2025 20:32:06,743 INFO : 12% Done
16 Mar 2025 20:32:06,809 INFO : 13% Done
16 Mar 2025 20:32:06,874 INFO : 14% Done
16 Mar 2025 20:32:06,930 INFO : 15% Done
16 Mar 2025 20:32:06,985 INFO : 16% Done
16 Mar 2025 20:32:07,042 INFO : 18% Done
16 Mar 2025 20:32:07,152 INFO : 19% Done
16 Mar 2025 20:32:07,208 INFO : 21% Done
16 Mar 2025 20:32:07,263 INFO : 22% Done
16 Mar 2025 20:32:07,371 INFO : 23% Done
16 Mar 2025 20:32:07,496 INFO : 25% Done
16 Mar 2025 20:32:07,553 INFO : 26% Done
16 Mar 2025 20:32:07,602 DEBUG: Total molecules inserted: 24
16 Mar 2025 20:32:07,602 INFO : Inserting 11. PFSA
16 Mar 2025 20:32:07,668 INFO : 27% Done
16 Mar 2025 20:32:07,791 INFO : 29% Done
16 Mar 2025 20:32:07,845 INFO : 30% Done
16 Mar 2025 20:32:07,901 INFO : 31% Done
16 Mar 2025 20:32:07,956 INFO : 32% Done
16 Mar 2025 20:32:08,022 INFO : 33% Done
16 Mar 2025 20:32:08,078 INFO : 34% Done
16 Mar 2025 20:32:08,130 DEBUG: Total molecules inserted: 9
16 Mar 2025 20:32:08,130 INFO : Inserting 12. PFCA
16 Mar 2025 20:32:08,135 INFO : 35% Done
16 Mar 2025 20:32:08,195 INFO : 36% Done
16 Mar 2025 20:32:08,250 INFO : 38% Done
16 Mar 2025 20:32:08,355 INFO : 40% Done
16 Mar 2025 20:32:08,412 INFO : 41% Done
16 Mar 2025 20:32:08,464 INFO : 42% Done
16 Mar 2025 20:32:08,520 INFO : 43% Done
16 Mar 2025 20:32:08,577 INFO : 44% Done
16 Mar 2025 20:32:08,641 INFO : 45% Done
16 Mar 2025 20:32:08,701 DEBUG: Total molecules inserted: 10
16 Mar 2025 20:32:08,701 INFO : Inserting 13. FTSA
16 Mar 2025 20:32:08,706 INFO : 46% Done
16 Mar 2025 20:32:08,760 INFO : 47% Done
16 Mar 2025 20:32:08,876 DEBUG: Total molecules inserted: 3
16 Mar 2025 20:32:08,876 INFO : Inserting 15. PFASA
16 Mar 2025 20:32:08,881 INFO : 48% Done
16 Mar 2025 20:32:08,942 INFO : 49% Done
16 Mar 2025 20:32:08,997 INFO : 50% Done
16 Mar 2025 20:32:09,058 DEBUG: Total molecules inserted: 3
16 Mar 2025 20:32:09,058 INFO : Inserting 16. PFESA
16 Mar 2025 20:32:09,072 INFO : 51% Done
16 Mar 2025 20:32:09,146 INFO : 52% Done
16 Mar 2025 20:32:09,222 INFO : 53% Done
16 Mar 2025 20:32:09,288 INFO : 54% Done
16 Mar 2025 20:32:09,348 INFO : 55% Done
16 Mar 2025 20:32:09,423 DEBUG: Total molecules inserted: 5
16 Mar 2025 20:32:09,423 INFO : Inserting 18. PFP
16 Mar 2025 20:32:09,486 INFO : 56% Done
16 Mar 2025 20:32:09,603 INFO : 57% Done
16 Mar 2025 20:32:09,717 DEBUG: Total molecules inserted: 5
16 Mar 2025 20:32:09,717 INFO : Inserting 20. PolyFCA
16 Mar 2025 20:32:09,726 INFO : 58% Done
16 Mar 2025 20:32:09,784 INFO : 59% Done
16 Mar 2025 20:32:09,833 DEBUG: Total molecules inserted: 2
16 Mar 2025 20:32:09,833 INFO : Inserting 22. Cl-PFSA
16 Mar 2025 20:32:09,895 DEBUG: Total molecules inserted: 1
16 Mar 2025 20:32:09,895 INFO : Inserting Fish
16 Mar 2025 20:32:09,901 INFO : 60% Done
16 Mar 2025 20:32:09,959 INFO : 61% Done
16 Mar 2025 20:32:10,018 DEBUG: Total molecules inserted: 2
16 Mar 2025 20:32:10,018 INFO : Inserting Gator NTA
16 Mar 2025 20:32:10,023 INFO : 62% Done
16 Mar 2025 20:32:10,087 INFO : 63% Done
16 Mar 2025 20:32:10,150 INFO : 64% Done
16 Mar 2025 20:32:10,209 INFO : 65% Done
16 Mar 2025 20:32:10,274 INFO : 66% Done
16 Mar 2025 20:32:10,339 INFO : 68% Done
16 Mar 2025 20:32:10,451 INFO : 69% Done
16 Mar 2025 20:32:10,512 INFO : 70% Done
16 Mar 2025 20:32:10,653 INFO : 71% Done
16 Mar 2025 20:32:10,724 INFO : 72% Done
16 Mar 2025 20:32:10,790 INFO : 73% Done
16 Mar 2025 20:32:10,854 INFO : 74% Done
16 Mar 2025 20:32:10,983 INFO : 76% Done
16 Mar 2025 20:32:11,036 INFO : 77% Done
16 Mar 2025 20:32:11,091 INFO : 78% Done
16 Mar 2025 20:32:11,157 INFO : 79% Done
16 Mar 2025 20:32:11,219 INFO : 80% Done
16 Mar 2025 20:32:11,280 DEBUG: Total molecules inserted: 19
16 Mar 2025 20:32:11,280 INFO : Done parsing Skyline document.
16 Mar 2025 20:32:11,331 INFO : No group comparisons found.
16 Mar 2025 20:32:11,331 INFO : Calculating calibration curves
16 Mar 2025 20:32:11,331 DEBUG: Calculating calibration curve for 01. SIL (MPFAC-HIF-ES), 1 of 11
16 Mar 2025 20:32:11,495 INFO : 82% Done
16 Mar 2025 20:32:11,495 DEBUG: Calculating calibration curve for 11. PFSA, 2 of 11
16 Mar 2025 20:32:11,612 INFO : 83% Done
16 Mar 2025 20:32:11,612 DEBUG: Calculating calibration curve for 12. PFCA, 3 of 11
16 Mar 2025 20:32:11,742 INFO : 85% Done
16 Mar 2025 20:32:11,742 DEBUG: Calculating calibration curve for 13. FTSA, 4 of 11
16 Mar 2025 20:32:11,781 INFO : 86% Done
16 Mar 2025 20:32:11,781 DEBUG: Calculating calibration curve for 15. PFASA, 5 of 11
16 Mar 2025 20:32:11,819 INFO : 88% Done
16 Mar 2025 20:32:11,819 DEBUG: Calculating calibration curve for 16. PFESA, 6 of 11
16 Mar 2025 20:32:11,884 INFO : 90% Done
16 Mar 2025 20:32:11,884 DEBUG: Calculating calibration curve for 18. PFP, 7 of 11
16 Mar 2025 20:32:11,944 INFO : 92% Done
16 Mar 2025 20:32:11,944 DEBUG: Calculating calibration curve for 20. PolyFCA, 8 of 11
16 Mar 2025 20:32:11,970 INFO : 93% Done
16 Mar 2025 20:32:11,970 DEBUG: Calculating calibration curve for 22. Cl-PFSA, 9 of 11
16 Mar 2025 20:32:11,983 INFO : 95% Done
16 Mar 2025 20:32:11,983 DEBUG: Calculating calibration curve for Fish, 10 of 11
16 Mar 2025 20:32:12,009 INFO : 96% Done
16 Mar 2025 20:32:12,009 DEBUG: Calculating calibration curve for Gator NTA, 11 of 11
16 Mar 2025 20:32:12,195 INFO : 98% Done
16 Mar 2025 20:32:12,205 INFO : Done calculating calibration curves.
16 Mar 2025 20:32:12,484 INFO : Creating and populating temp tables for Proportion values
16 Mar 2025 20:32:12,521 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Mar 2025 20:32:13,134 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Mar 2025 20:32:13,514 INFO : Cleaning up temp tables
16 Mar 2025 20:32:13,768 INFO : Completed import of Skyline document from 2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip
16 Mar 2025 20:32:13,771 INFO : 100% Done
16 Mar 2025 20:32:13,775 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNC%20Baker%20Lab%20-%202025%20Alligator%20PFAS/@files/export/xar/experiments_and_runs.xar.exploded/Run255626/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip into the system
16 Mar 2025 20:32:13,959 INFO : Done importing xar
16 Mar 2025 20:32:13,960 INFO : Loading pages and webpart properties
16 Mar 2025 20:32:14,007 INFO : Done importing 3 page(s) with 5 webpart(s)
16 Mar 2025 20:32:14,007 INFO : Loading File Browser config
16 Mar 2025 20:32:14,007 INFO : Done importing File Browser config
16 Mar 2025 20:32:14,008 INFO : Starting Sample Status Data import
16 Mar 2025 20:32:14,008 INFO : No sample types XAR file to process.
16 Mar 2025 20:32:14,008 INFO : Finished importing Sample Status Data
16 Mar 2025 20:32:14,012 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
16 Mar 2025 20:32:14,015 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
16 Mar 2025 20:32:14,015 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
16 Mar 2025 20:32:14,015 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
16 Mar 2025 20:32:14,015 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
16 Mar 2025 20:32:14,016 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
16 Mar 2025 20:32:14,018 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 Mar 2025 20:32:14,022 INFO : Moving files to folder /Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS and creating symlinks
16 Mar 2025 20:32:14,023 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22
16 Mar 2025 20:32:14,024 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyl to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyl
16 Mar 2025 20:32:14,029 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyl targeting /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyl
16 Mar 2025 20:32:14,030 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/test_library.blib to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/test_library.blib
16 Mar 2025 20:32:14,031 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/test_library.blib targeting /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/test_library.blib
16 Mar 2025 20:32:14,032 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky
16 Mar 2025 20:32:14,032 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky targeting /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky
16 Mar 2025 20:32:14,034 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd
16 Mar 2025 20:32:14,034 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd targeting /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd
16 Mar 2025 20:32:14,035 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky.view to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky.view
16 Mar 2025 20:32:14,036 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky.view targeting /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.sky.view
16 Mar 2025 20:32:14,037 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/RawFiles
16 Mar 2025 20:32:14,038 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip to /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip
16 Mar 2025 20:32:14,039 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip targeting /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip
16 Mar 2025 20:32:14,039 INFO : Aligning data files urls in folder: /Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS
16 Mar 2025 20:32:14,040 DEBUG: Setting filePathRoot on copied run: 2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip to: /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files
16 Mar 2025 20:32:14,042 DEBUG: Setting dataFileUri on copied data: 2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip to: /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22.sky.zip
16 Mar 2025 20:32:14,044 DEBUG: Setting dataFileUri on copied data: 2024-12-16_gator-PFAS-detections-only.skyd to: /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/2024-12-16_gator-PFAS-detections-only_2025-03-15_14-10-22/2024-12-16_gator-PFAS-detections-only.skyd
16 Mar 2025 20:32:14,045 INFO : Importing files metadata.
16 Mar 2025 20:32:14,045 DEBUG: [/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS] Reading files metadata from /data/labkey/files/Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS/@files/export
16 Mar 2025 20:32:14,046 INFO :
16 Mar 2025 20:32:14,046 INFO : Experiment import completed successfully.
16 Mar 2025 20:32:14,046 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 Mar 2025 20:32:14,066 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
16 Mar 2025 20:32:14,067 INFO :
16 Mar 2025 20:32:14,067 INFO : Checking for library folders.
16 Mar 2025 20:32:14,068 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
16 Mar 2025 20:32:14,083 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 Mar 2025 20:32:14,083 INFO :
16 Mar 2025 20:32:14,083 INFO : Finishing up experiment copy.
16 Mar 2025 20:32:14,084 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/UNC Baker Lab - 2025 Alligator PFAS
16 Mar 2025 20:32:14,085 INFO : Setting version on new experiment to 1
16 Mar 2025 20:32:14,086 INFO : Updating permanent link to point to the new copy of the data.
16 Mar 2025 20:32:14,103 INFO : Removing copy permissions given to Panorama Public
16 Mar 2025 20:32:14,107 INFO : Adding read permissions to all users that are folder admins in the source folder.
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to jndodds@unc.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to rlberes@unc.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to akstewar@ncsu.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to mrfoster@ncsu.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to guozhi@unc.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to erinmsb@unc.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to melanie.odenkirk@colostate.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to kikirkwo@ncsu.edu
16 Mar 2025 20:32:14,109 INFO : Assigning ReaderRole to aboatman@unc.edu
16 Mar 2025 20:32:14,109 INFO : Assigning PanoramaPublicSubmitterRole to erinmsb@unc.edu
16 Mar 2025 20:32:14,109 INFO : Assigning PanoramaPublicSubmitterRole to aboatman@unc.edu
16 Mar 2025 20:32:14,118 INFO : User erinmsb@unc.edu is already a member of group Panorama Public Submitters
16 Mar 2025 20:32:14,118 INFO : User aboatman@unc.edu is already a member of group Panorama Public Submitters
16 Mar 2025 20:32:14,118 INFO : Updating the 'Raw Data' tab configuration
16 Mar 2025 20:32:14,120 INFO : Creating a reviewer account.
16 Mar 2025 20:32:14,166 INFO : Created reviewer with email: panorama+reviewer333@proteinms.net
16 Mar 2025 20:32:14,166 INFO : Generating password.
16 Mar 2025 20:32:14,304 INFO : Set reviewer password successfully.
16 Mar 2025 20:32:14,311 INFO : Adding user panorama+reviewer333@proteinms.net to group Reviewers
16 Mar 2025 20:32:14,313 INFO : Hiding the Data Pipeline tab.
16 Mar 2025 20:32:14,316 INFO : Updating Submission. Setting copiedExperimentId to 2029
16 Mar 2025 20:32:15,741 INFO : Assigning a DOI.
16 Mar 2025 20:32:16,521 INFO : Assigned DOI: 10.6069/t710-jr31
16 Mar 2025 20:32:16,613 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'