19 Jun 2025 09:59:04,112 DEBUG: Resetting Job ID: 98a9f8ca-2f5c-103e-9c0d-1cc91aa94300
19 Jun 2025 09:59:04,127 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
19 Jun 2025 09:59:04,127 INFO : Starting to import Skyline document from Aducanumab_Selectivity_2025-06-19_12-58-48.sky.zip
19 Jun 2025 09:59:04,128 INFO : Expanding Aducanumab_Selectivity.skyd
19 Jun 2025 09:59:04,168 INFO : Expanding Aducanumab_Selectivity.sky.view
19 Jun 2025 09:59:04,169 INFO : Expanding Aducanumab_Selectivity.sky
19 Jun 2025 09:59:04,177 INFO : Expanding Aducanumab_Selectivity.skyl
19 Jun 2025 09:59:04,179 INFO : Reading Skyline file, Aducanumab_Selectivity.sky, to determine if the TransitionChromInfos in the document should be stored...
19 Jun 2025 09:59:04,220 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
19 Jun 2025 09:59:04,222 INFO : 1% Done
19 Jun 2025 09:59:04,222 INFO : Copying SKYD to temp directory for import purposes
19 Jun 2025 09:59:04,241 INFO : Copying complete
19 Jun 2025 09:59:04,242 DEBUG: Starting to load chromatogram headers
19 Jun 2025 09:59:04,242 DEBUG: Done loading chromatogram headers
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_Plasma_3hr-3.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_Plasma_3hr-2.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_Plasma_6hr-2.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_Plasma_6hr-1.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_Plasma_3hr-1.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_Plasma_6hr-3.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_selectivity_Plasma_2_25x.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_selectivity_Plasma_3_25x.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,268 WARN : Unable to resolve D:\Aducanumab project\Stability test\Adu_selectivity_Plasma_1_25x.raw to SampleFile, will not import its sample-scoped chromatogram
19 Jun 2025 09:59:04,496 INFO : Inserting sp|P0001|Aducanumab
19 Jun 2025 09:59:04,516 INFO : 18% Done
19 Jun 2025 09:59:04,864 DEBUG: Total peptides inserted: 1
19 Jun 2025 09:59:04,866 INFO : 19% Done
19 Jun 2025 09:59:04,866 INFO : Inserting sp|P0000|Aducanumab
19 Jun 2025 09:59:04,879 INFO : 31% Done
19 Jun 2025 09:59:05,150 DEBUG: Total peptides inserted: 1
19 Jun 2025 09:59:05,150 INFO : Inserting sp|P0000|Aducanumab
19 Jun 2025 09:59:05,178 INFO : 61% Done
19 Jun 2025 09:59:05,713 DEBUG: Total peptides inserted: 1
19 Jun 2025 09:59:05,713 INFO : Inserting sp|P0001|Aducanumab
19 Jun 2025 09:59:05,732 INFO : 80% Done
19 Jun 2025 09:59:06,181 DEBUG: Total peptides inserted: 1
19 Jun 2025 09:59:06,182 INFO : Done parsing Skyline document.
19 Jun 2025 09:59:06,233 INFO : No group comparisons found.
19 Jun 2025 09:59:06,233 INFO : Calculating calibration curves
19 Jun 2025 09:59:06,234 DEBUG: Calculating calibration curve for sp|P0001|Aducanumab, 1 of 4
19 Jun 2025 09:59:06,332 INFO : 85% Done
19 Jun 2025 09:59:06,332 DEBUG: Calculating calibration curve for sp|P0000|Aducanumab, 2 of 4
19 Jun 2025 09:59:06,395 INFO : 89% Done
19 Jun 2025 09:59:06,395 DEBUG: Calculating calibration curve for sp|P0000|Aducanumab, 3 of 4
19 Jun 2025 09:59:06,569 INFO : 94% Done
19 Jun 2025 09:59:06,569 DEBUG: Calculating calibration curve for sp|P0001|Aducanumab, 4 of 4
19 Jun 2025 09:59:06,672 INFO : 98% Done
19 Jun 2025 09:59:06,673 INFO : Done calculating calibration curves.
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_Plasma_6hr-1.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_Plasma_3hr-3.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_selectivity_Plasma_1_25x.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_Plasma_6hr-2.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_Plasma_3hr-2.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_Plasma_3hr-1.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_selectivity_Plasma_2_25x.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_selectivity_Plasma_3_25x.raw
19 Jun 2025 09:59:06,702 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Stability test\Adu_Plasma_6hr-3.raw
19 Jun 2025 09:59:06,702 INFO : Creating and populating temp tables for Proportion values
19 Jun 2025 09:59:06,706 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Jun 2025 09:59:06,714 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Jun 2025 09:59:06,717 INFO : Cleaning up temp tables
19 Jun 2025 09:59:06,737 INFO : Deleted temp copy of SKYD file
19 Jun 2025 09:59:06,737 INFO : Completed import of Skyline document from Aducanumab_Selectivity_2025-06-19_12-58-48.sky.zip
19 Jun 2025 09:59:06,739 INFO : 100% Done
19 Jun 2025 09:59:06,930 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'