14 Oct 2024 16:34:46,809 INFO : Validating data for a ProteomeXchange submission.
14 Oct 2024 16:34:46,809 INFO : =======================================
14 Oct 2024 16:34:46,821 DEBUG: Resetting Job ID: d1c161df-6cb2-103d-8222-dc22ffcd099a
14 Oct 2024 16:34:46,843 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
14 Oct 2024 16:34:46,844 INFO : Validating data for experiment Id: 1926, validation Id: 1159
14 Oct 2024 16:34:46,860 INFO : Validating data for 6 Skyline documents in 1 folders
14 Oct 2024 16:34:46,864 INFO : Sample file validation for Skyline document: Lumos_8mz_staggered_reCID_human_2024-10-10_23-35-17.sky.zip
14 Oct 2024 16:34:46,864 INFO : Found all sample files.
14 Oct 2024 16:34:46,867 INFO : Sample file validation for Skyline document: Lumos_8mz_staggered_reCID_yeast_carafe_2024-10-10_23-53-17.sky.zip
14 Oct 2024 16:34:46,867 INFO : Found all sample files.
14 Oct 2024 16:34:46,870 INFO : Sample file validation for Skyline document: Exploris480_8mz_staggered_metaproteome_carafe_2024-10-11_00-29-21.sky.zip
14 Oct 2024 16:34:46,870 INFO : Found all sample files.
14 Oct 2024 16:34:46,876 INFO : Sample file validation for Skyline document: Astral_2mz_yeast_EncyclopeDIA_carafe_2024-10-11_14-35-53.sky.zip
14 Oct 2024 16:34:46,876 INFO : Found all sample files.
14 Oct 2024 16:34:46,880 INFO : Sample file validation for Skyline document: Lumos_8mz_staggered_yeast_EncyclopeDIA_carafe_2024-10-11_15-06-52.sky.zip
14 Oct 2024 16:34:46,880 INFO : Found all sample files.
14 Oct 2024 16:34:46,881 INFO : Sample file validation for Skyline document: Exploris480_16mz_unstaggered_phosphoDIA_carafe_2024-10-11_16-28-12.sky.zip
14 Oct 2024 16:34:46,881 INFO : Found all sample files.
14 Oct 2024 16:34:47,439 INFO : Modifications validation:
14 Oct 2024 16:34:47,439 INFO : VALID MODIFICATIONS:
14 Oct 2024 16:34:47,439 INFO : 7241: Phospho (ST): UNIMOD:21 - Phospho
14 Oct 2024 16:34:47,439 INFO : Exploris480_16mz_unstaggered_phosphoDIA_carafe_2024-10-11_16-28-12.sky.zip
14 Oct 2024 16:34:47,439 INFO : 7242: Phospho (Y): UNIMOD:21 - Phospho
14 Oct 2024 16:34:47,439 INFO : Exploris480_16mz_unstaggered_phosphoDIA_carafe_2024-10-11_16-28-12.sky.zip
14 Oct 2024 16:34:47,439 INFO : 7243: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
14 Oct 2024 16:34:47,439 INFO : Exploris480_8mz_staggered_metaproteome_carafe_2024-10-11_00-29-21.sky.zip
14 Oct 2024 16:34:47,439 INFO : Lumos_8mz_staggered_reCID_yeast_carafe_2024-10-10_23-53-17.sky.zip
14 Oct 2024 16:34:47,439 INFO : Exploris480_16mz_unstaggered_phosphoDIA_carafe_2024-10-11_16-28-12.sky.zip
14 Oct 2024 16:34:47,439 INFO : Lumos_8mz_staggered_yeast_EncyclopeDIA_carafe_2024-10-11_15-06-52.sky.zip
14 Oct 2024 16:34:47,439 INFO : Astral_2mz_yeast_EncyclopeDIA_carafe_2024-10-11_14-35-53.sky.zip
14 Oct 2024 16:34:47,439 INFO : Lumos_8mz_staggered_reCID_human_2024-10-10_23-35-17.sky.zip
14 Oct 2024 16:34:47,439 INFO : INVALID MODIFICATIONS (No Unimod ID):
14 Oct 2024 16:34:47,441 INFO : Validating spectral library: Exploris480_8mz_staggered_metaproteome_carafe.blib
14 Oct 2024 16:34:47,455 INFO : 'Exploris480_8mz_staggered_metaproteome_carafe' (Exploris480_8mz_staggered_metaproteome_carafe.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
14 Oct 2024 16:34:47,455 INFO : MISSING FILES:
14 Oct 2024 16:34:47,455 INFO : Spectrum File: Dora_20240323_Neo_269_HAB_Sample01
14 Oct 2024 16:34:47,455 INFO : Spectrum File: Dora_20240323_Neo_270_HAB_Sample02
14 Oct 2024 16:34:47,455 INFO : Spectrum File: Dora_20240323_Neo_271_HAB_Sample03
14 Oct 2024 16:34:47,456 INFO : Validating spectral library: wide-combined-results.blib
14 Oct 2024 16:34:47,481 INFO : 'wide-combined-results1 (Lumos_8mz_staggered_yeast_EncyclopeDIA_carafe)' (wide-combined-results.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: Missing peptide ID file names in the .blib file.
14 Oct 2024 16:34:47,482 INFO : Validating spectral library: Lumos_8mz_staggered_reCID_human.blib
14 Oct 2024 16:34:47,500 INFO : 'Lumos_8mz_staggered_reCID_human' (Lumos_8mz_staggered_reCID_human.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
14 Oct 2024 16:34:47,500 INFO : MISSING FILES:
14 Oct 2024 16:34:47,500 INFO : Spectrum File: Crucios_20240320_CH_15_HeLa_CID_27NCE_01
14 Oct 2024 16:34:47,501 INFO : Validating spectral library: Lumos_8mz_staggered_reCID_yeast_carafe.blib
14 Oct 2024 16:34:47,613 INFO : 'Lumos_8mz_staggered_reCID_yeast_carafe' (Lumos_8mz_staggered_reCID_yeast_carafe.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
14 Oct 2024 16:34:47,614 INFO : MISSING FILES:
14 Oct 2024 16:34:47,614 INFO : Spectrum File: Crucios_20240320_CH_17_Yeast_CID_27NCE_01
14 Oct 2024 16:34:47,615 INFO : Validating spectral library: Exploris480_16mz_unstaggered_phosphoDIA_carafe.blib
14 Oct 2024 16:34:47,623 INFO : 'Exploris480_16mz_unstaggered_phosphoDIA_carafe' (Exploris480_16mz_unstaggered_phosphoDIA_carafe.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
14 Oct 2024 16:34:47,623 INFO : MISSING FILES:
14 Oct 2024 16:34:47,623 INFO : Spectrum File: Dora_20240323_Neo_322_Yeast_Phospho_16mz_unstaggered_01
14 Oct 2024 16:34:47,624 INFO : Validating spectral library: wide-combined-results.blib
14 Oct 2024 16:34:47,666 INFO : 'wide-combined-results (Astral_2mz_yeast_EncyclopeDIA_carafe)' (wide-combined-results.blib) library in 1 Skyline documents was built with 4 raw files; 0 peptide Id files. Status: Missing peptide ID file names in the .blib file.
14 Oct 2024 16:34:47,667 INFO : Spectral library validation complete.
14 Oct 2024 16:34:47,667 INFO : Data validation is complete. Status is IncompleteMetadata
14 Oct 2024 16:34:47,667 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'